(not at the head of any monitored branch or PR)
2022-07-26 15:58.06: New job: test molenc.11.4.0 with ounit2.2.2.0, using opam dev
                              from https://github.com/ocaml/opam-repository.git#refs/pull/21354/head (10b49fadb0efcff442ed8cae85f7cc119fe28629)
                              on debian-11-ocaml-4.14/amd64

To reproduce locally:

git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/21354/head" && git reset --hard 10b49fad
git fetch origin master
git merge 42e749bdca1e36a9f7bbef60b3507d34c6c57fa3
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-11-ocaml-4.14@sha256:1461d919411f5999f6d7ffd573b9b5385cda91accf83d3866b26097e791220be
USER 1000:1000
WORKDIR /home/opam
RUN for pkg in $(opam pin list --short); do opam pin remove "$pkg"; done
RUN opam repository remove -a multicore || true
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMSOLVERTIMEOUT="500"
ENV OPAMPRECISETRACKING="1"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam pin add -k version -yn ounit2.2.2.0 2.2.0
RUN opam update --depexts
RUN opam remove ounit2.2.2.0 && opam install --deps-only ounit2.2.2.0 && opam install -v ounit2.2.2.0; \
    res=$?; \
    test "$res" != 31 && exit "$res"; \
    export OPAMCLI=2.0; \
    build_dir=$(opam var prefix)/.opam-switch/build; \
    failed=$(ls "$build_dir"); \
    for pkg in $failed; do \
    if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-11\""; then \
    echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
    fi; \
    done; \
    exit 1
RUN opam update --depexts
RUN opam remove molenc.11.4.0 && opam install --deps-only molenc.11.4.0 && opam install -v molenc.11.4.0; \
    res=$?; \
    test "$res" != 31 && exit "$res"; \
    export OPAMCLI=2.0; \
    build_dir=$(opam var prefix)/.opam-switch/build; \
    failed=$(ls "$build_dir"); \
    for pkg in $failed; do \
    if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-11\""; then \
    echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
    fi; \
    done; \
    exit 1
RUN opam update --depexts
RUN opam remove molenc.11.4.0 && opam install --deps-only --with-test molenc.11.4.0 && opam install -v --with-test molenc.11.4.0; \
    res=$?; \
    test "$res" != 31 && exit "$res"; \
    export OPAMCLI=2.0; \
    build_dir=$(opam var prefix)/.opam-switch/build; \
    failed=$(ls "$build_dir"); \
    for pkg in $failed; do \
    if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-11\""; then \
    echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
    fi; \
    done; \
    exit 1

END-OF-DOCKERFILE
docker build -f ../Dockerfile .

2022-07-26 15:58.06: Using cache hint "ocaml/opam:debian-11-ocaml-4.14@sha256:1461d919411f5999f6d7ffd573b9b5385cda91accf83d3866b26097e791220be-ounit2.2.2.0-molenc.11.4.0-10b49fadb0efcff442ed8cae85f7cc119fe28629"
2022-07-26 15:58.06: Using OBuilder spec:
((from ocaml/opam:debian-11-ocaml-4.14@sha256:1461d919411f5999f6d7ffd573b9b5385cda91accf83d3866b26097e791220be)
 (user (uid 1000) (gid 1000))
 (workdir /home/opam)
 (run (shell "for pkg in $(opam pin list --short); do opam pin remove \"$pkg\"; done"))
 (run (shell "opam repository remove -a multicore || true"))
 (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
 (run (shell "opam init --reinit --config .opamrc-sandbox -ni"))
 (env OPAMDOWNLOADJOBS 1)
 (env OPAMERRLOGLEN 0)
 (env OPAMSOLVERTIMEOUT 500)
 (env OPAMPRECISETRACKING 1)
 (run (shell "rm -rf opam-repository/"))
 (copy (src .) (dst opam-repository/))
 (run (shell "opam repository set-url --strict default opam-repository/"))
 (run (shell "opam pin add -k version -yn ounit2.2.2.0 2.2.0"))
 (run (network host)
      (shell "opam update --depexts"))
 (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
      (network host)
      (shell  "opam remove ounit2.2.2.0 && opam install --deps-only ounit2.2.2.0 && opam install -v ounit2.2.2.0;\
             \n        res=$?;\
             \n        test \"$res\" != 31 && exit \"$res\";\
             \n        export OPAMCLI=2.0;\
             \n        build_dir=$(opam var prefix)/.opam-switch/build;\
             \n        failed=$(ls \"$build_dir\");\
             \n        for pkg in $failed; do\
             \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
             \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
             \n          fi;\
             \n        done;\
             \n        exit 1"))
 (run (network host)
      (shell "opam update --depexts"))
 (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
      (network host)
      (shell  "opam remove molenc.11.4.0 && opam install --deps-only molenc.11.4.0 && opam install -v molenc.11.4.0;\
             \n        res=$?;\
             \n        test \"$res\" != 31 && exit \"$res\";\
             \n        export OPAMCLI=2.0;\
             \n        build_dir=$(opam var prefix)/.opam-switch/build;\
             \n        failed=$(ls \"$build_dir\");\
             \n        for pkg in $failed; do\
             \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
             \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
             \n          fi;\
             \n        done;\
             \n        exit 1"))
 (run (network host)
      (shell "opam update --depexts"))
 (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
      (network host)
      (shell  "opam remove molenc.11.4.0 && opam install --deps-only --with-test molenc.11.4.0 && opam install -v --with-test molenc.11.4.0;\
             \n        res=$?;\
             \n        test \"$res\" != 31 && exit \"$res\";\
             \n        export OPAMCLI=2.0;\
             \n        build_dir=$(opam var prefix)/.opam-switch/build;\
             \n        failed=$(ls \"$build_dir\");\
             \n        for pkg in $failed; do\
             \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
             \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
             \n          fi;\
             \n        done;\
             \n        exit 1"))
)

2022-07-26 15:58.06: Waiting for resource in pool OCluster
2022-07-27 04:54.15: Waiting for worker...
2022-07-27 04:56.18: Got resource from pool OCluster
Building on x86-bm-6.ocamllabs.io
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HEAD is now at 42e749bdca Merge pull request #21885 from kit-ty-kate/fix-123
Merge made by the 'ort' strategy.
 packages/ounit2/ounit2.2.2.0/opam | 3 +++
 packages/ounit2/ounit2.2.2.1/opam | 3 +++
 packages/ounit2/ounit2.2.2.2/opam | 3 +++
 packages/ounit2/ounit2.2.2.3/opam | 3 +++
 packages/ounit2/ounit2.2.2.4/opam | 3 +++
 packages/ounit2/ounit2.2.2.5/opam | 3 +++
 packages/ounit2/ounit2.2.2.6/opam | 3 +++
 7 files changed, 21 insertions(+)

(from ocaml/opam:debian-11-ocaml-4.14@sha256:1461d919411f5999f6d7ffd573b9b5385cda91accf83d3866b26097e791220be)
2022-07-27 04:57.56 ---> using "d837bbe1b6e58c32e942b55a1eb695ef30d2cac63c8a5d708beb3548d17192b4" from cache

/: (user (uid 1000) (gid 1000))

/: (workdir /home/opam)

/home/opam: (run (shell "for pkg in $(opam pin list --short); do opam pin remove \"$pkg\"; done"))
Ok, ocaml-base-compiler is no longer pinned to https://github.com/ocaml/ocaml/archive/4.14.0.tar.gz (version 4.14.0)
No package build needed.
Nothing to do.
# Run eval $(opam env) to update the current shell environment
2022-07-27 04:57.56 ---> using "543d29c04ee698e03faf7cfdc4bb3cf9e04a80ab924d981f1055393f1479d117" from cache

/home/opam: (run (shell "opam repository remove -a multicore || true"))
[WARNING] No configured repositories by these names found: multicore
2022-07-27 04:57.56 ---> using "e8a5c58b05459f7be98d7b03e29623d3a05b15b34833b50ebffb60eff7871cde" from cache

/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2022-07-27 04:57.56 ---> using "4687a20afa7557b4b2498b537430ed75c7b51cd6cad60d9c4757ff852befb1a7" from cache

/home/opam: (run (shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
  - you won't be able to use mercurial repositories unless you install the hg command on your system.
  - you won't be able to use darcs repositories unless you install the darcs command on your system.

This development version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.1, which can't be reverted.
You may want to back it up before going further.

Continue? [y/n] y
Format upgrade done.

<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] synchronised from file:///home/opam/opam-repository
2022-07-27 04:57.56 ---> using "87c4051d859f505ce794fbdc2ed87105744babed536dd4b09731a9b1e22fd3d4" from cache

/home/opam: (env OPAMDOWNLOADJOBS 1)

/home/opam: (env OPAMERRLOGLEN 0)

/home/opam: (env OPAMSOLVERTIMEOUT 500)

/home/opam: (env OPAMPRECISETRACKING 1)

/home/opam: (run (shell "rm -rf opam-repository/"))
2022-07-27 04:57.56 ---> using "96a067e6b08152c0f77ff1628817c13e12ac3db1ba1ac882a90278edcbb3d011" from cache

/home/opam: (copy (src .) (dst opam-repository/))
2022-07-27 04:58.00 ---> using "5ce106567f73501cd746c3358ba50b49e5b3ad28d47e7894c1f65b44fcda87e7" from cache

/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2022-07-27 04:58.00 ---> using "0981e55d831537155c9e161d0ab37d0aeee18cf4c3d1dbad8143304b4c508a5d" from cache

/home/opam: (run (shell "opam pin add -k version -yn ounit2.2.2.0 2.2.0"))
ounit2 is now pinned to version 2.2.0
2022-07-27 04:58.00 ---> using "a5b811fe2c6ab2fd90efb98285ea9db0346a5de8dadc9481e3cd36fb68f11371" from cache

/home/opam: (run (network host)
                 (shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian bullseye InRelease
- Get:2 http://deb.debian.org/debian-security bullseye-security InRelease [48.4 kB]
- Get:3 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB]
- Get:4 http://deb.debian.org/debian-security bullseye-security/main amd64 Packages [168 kB]
- Fetched 261 kB in 1s (342 kB/s)
- Reading package lists...
- 
2022-07-27 04:58.00 ---> using "db2d7bb6f3a492dbe20e0d4ddb4733d768da5e64ce8f97c3cbc89325acd13b48" from cache

/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
                 (network host)
                 (shell  "opam remove ounit2.2.2.0 && opam install --deps-only ounit2.2.2.0 && opam install -v ounit2.2.2.0;\
                        \n        res=$?;\
                        \n        test \"$res\" != 31 && exit \"$res\";\
                        \n        export OPAMCLI=2.0;\
                        \n        build_dir=$(opam var prefix)/.opam-switch/build;\
                        \n        failed=$(ls \"$build_dir\");\
                        \n        for pkg in $failed; do\
                        \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
                        \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
                        \n          fi;\
                        \n        done;\
                        \n        exit 1"))
Nothing to do.
[NOTE] ounit2.2.2.0 is not installed.

The following actions will be performed:
=== install 4 packages
  - install base-bytes   base  [required by ounit2]
  - install dune         3.4.1 [required by ounit2]
  - install ocamlfind    1.9.5 [required by base-bytes]
  - install stdlib-shims 0.3.0 [required by ounit2]

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved dune.3.4.1  (cached)
-> retrieved ocamlfind.1.9.5  (cached)
-> retrieved stdlib-shims.0.3.0  (cached)
-> installed ocamlfind.1.9.5
-> installed base-bytes.base
-> installed dune.3.4.1
-> installed stdlib-shims.0.3.0
Done.
# Run eval $(opam env) to update the current shell environment
The following actions will be performed:
=== install 1 package
  - install ounit2 2.2.0 (pinned)

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing  1/3:
-> retrieved ounit2.2.2.0  (cached)
Processing  2/3: [ounit2: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "ounit2" "-j" "31" (CWD=/home/opam/.opam/4.14/.opam-switch/build/ounit2.2.2.0)
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/lib/ounit2/advanced/.oUnitAdvanced.objs/byte -I /home/opam/.opam/4.14/lib/stdlib-shims -no-alias-deps -o src/lib/ounit2/advanced/.oUnitAdvanced.objs/byte/oUnitAssert.cmo -c -impl src/lib/ounit2/advanced/oUnitAssert.ml)
- File "src/lib/ounit2/advanced/oUnitAssert.ml", line 130, characters 13-27:
- 130 |     ?(sinput=Stream.of_list [])
-                    ^^^^^^^^^^^^^^
- Alert deprecated: module Stdlib.Stream
- Use the camlp-streams library instead.
- File "src/lib/ounit2/advanced/oUnitAssert.ml", line 270, characters 13-24:
- 270 |              Stream.iter
-                    ^^^^^^^^^^^
- Alert deprecated: module Stdlib.Stream
- Use the camlp-streams library instead.
- File "src/lib/ounit2/advanced/oUnitAssert.ml", line 315, characters 26-43:
- 315 |                  foutput (Stream.of_channel chn)
-                                 ^^^^^^^^^^^^^^^^^
- Alert deprecated: module Stdlib.Stream
- Use the camlp-streams library instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlopt.opt -w -40 -g -I src/lib/ounit2/advanced/.oUnitAdvanced.objs/byte -I src/lib/ounit2/advanced/.oUnitAdvanced.objs/native -I /home/opam/.opam/4.14/lib/stdlib-shims -intf-suffix .ml -no-alias-deps -o src/lib/ounit2/advanced/.oUnitAdvanced.objs/native/oUnitAssert.cmx -c -impl src/lib/ounit2/advanced/oUnitAssert.ml)
- File "src/lib/ounit2/advanced/oUnitAssert.ml", line 130, characters 13-27:
- 130 |     ?(sinput=Stream.of_list [])
-                    ^^^^^^^^^^^^^^
- Alert deprecated: module Stdlib.Stream
- Use the camlp-streams library instead.
- File "src/lib/ounit2/advanced/oUnitAssert.ml", line 270, characters 13-24:
- 270 |              Stream.iter
-                    ^^^^^^^^^^^
- Alert deprecated: module Stdlib.Stream
- Use the camlp-streams library instead.
- File "src/lib/ounit2/advanced/oUnitAssert.ml", line 315, characters 26-43:
- 315 |                  foutput (Stream.of_channel chn)
-                                 ^^^^^^^^^^^^^^^^^
- Alert deprecated: module Stdlib.Stream
- Use the camlp-streams library instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/lib/ounit2/.oUnit.objs/byte -I /home/opam/.opam/4.14/lib/stdlib-shims -I src/lib/ounit2/advanced/.oUnitAdvanced.objs/byte -no-alias-deps -o src/lib/ounit2/.oUnit.objs/byte/oUnit2.cmi -c -intf src/lib/ounit2/oUnit2.mli)
- File "src/lib/ounit2/oUnit2.mli", line 88, characters 17-25:
- 88 |     ?sinput:char Stream.t ->
-                       ^^^^^^^^
- Alert deprecated: module Stdlib.Stream
- Use the camlp-streams library instead.
- File "src/lib/ounit2/oUnit2.mli", line 89, characters 19-27:
- 89 |     ?foutput:(char Stream.t -> unit) ->
-                         ^^^^^^^^
- Alert deprecated: module Stdlib.Stream
- Use the camlp-streams library instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/lib/ounit2/.oUnit.objs/byte -I /home/opam/.opam/4.14/lib/stdlib-shims -I src/lib/ounit2/advanced/.oUnitAdvanced.objs/byte -no-alias-deps -o src/lib/ounit2/.oUnit.objs/byte/oUnit.cmi -c -intf src/lib/ounit2/oUnit.mli)
- File "src/lib/ounit2/oUnit.mli", line 80, characters 17-25:
- 80 |     ?sinput:char Stream.t ->
-                       ^^^^^^^^
- Alert deprecated: module Stdlib.Stream
- Use the camlp-streams library instead.
- File "src/lib/ounit2/oUnit.mli", line 81, characters 19-27:
- 81 |     ?foutput:(char Stream.t -> unit) ->
-                         ^^^^^^^^
- Alert deprecated: module Stdlib.Stream
- Use the camlp-streams library instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/lib/ounit2/threads/.oUnitThreads.objs/byte -I src/lib/ounit2/threads/.oUnitThreads.objs/public_cmi -I /home/opam/.opam/4.14/lib/ocaml/threads -I /home/opam/.opam/4.14/lib/stdlib-shims -I src/lib/ounit2/.oUnit.objs/byte -I src/lib/ounit2/advanced/.oUnitAdvanced.objs/byte -no-alias-deps -open OUnitThreads__ -o src/lib/ounit2/threads/.oUnitThreads.objs/byte/oUnitThreads__OUnitRunnerThreads.cmo -c -impl src/lib/ounit2/threads/oUnitRunnerThreads.ml)
- File "src/lib/ounit2/threads/oUnitRunnerThreads.ml", line 147, characters 8-19:
- 147 |         Thread.kill thread;
-               ^^^^^^^^^^^
- Alert deprecated: Thread.kill
- Not implemented, do not use
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlopt.opt -w -40 -g -I src/lib/ounit2/threads/.oUnitThreads.objs/byte -I src/lib/ounit2/threads/.oUnitThreads.objs/native -I src/lib/ounit2/threads/.oUnitThreads.objs/public_cmi -I /home/opam/.opam/4.14/lib/ocaml/threads -I /home/opam/.opam/4.14/lib/stdlib-shims -I src/lib/ounit2/.oUnit.objs/byte -I src/lib/ounit2/.oUnit.objs/native -I src/lib/ounit2/advanced/.oUnitAdvanced.objs/byte -I src/lib/ounit2/advanced/.oUnitAdvanced.objs/native -intf-suffix .ml -no-alias-deps -open OUnitThreads__ -o src/lib/ounit2/threads/.oUnitThreads.objs/native/oUnitThreads__OUnitRunnerThreads.cmx -c -impl src/lib/ounit2/threads/oUnitRunnerThreads.ml)
- File "src/lib/ounit2/threads/oUnitRunnerThreads.ml", line 147, characters 8-19:
- 147 |         Thread.kill thread;
-               ^^^^^^^^^^^
- Alert deprecated: Thread.kill
- Not implemented, do not use
-> compiled  ounit2.2.2.0
-> installed ounit2.2.2.0
Done.
# Run eval $(opam env) to update the current shell environment
2022-07-27 04:58.00 ---> using "549816a256be73d9a20d8aac9e10b779e4fdffd8e09de149b8d5e327ac84c14f" from cache

/home/opam: (run (network host)
                 (shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian bullseye InRelease
- Hit:2 http://deb.debian.org/debian-security bullseye-security InRelease
- Hit:3 http://deb.debian.org/debian bullseye-updates InRelease
- Reading package lists...
- 
2022-07-27 04:58.00 ---> using "ed77e423a302c60a5809ee2b791a97889b346ae238a3ae55d40f898cb095304c" from cache

/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
                 (network host)
                 (shell  "opam remove molenc.11.4.0 && opam install --deps-only molenc.11.4.0 && opam install -v molenc.11.4.0;\
                        \n        res=$?;\
                        \n        test \"$res\" != 31 && exit \"$res\";\
                        \n        export OPAMCLI=2.0;\
                        \n        build_dir=$(opam var prefix)/.opam-switch/build;\
                        \n        failed=$(ls \"$build_dir\");\
                        \n        for pkg in $failed; do\
                        \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
                        \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
                        \n          fi;\
                        \n        done;\
                        \n        exit 1"))
Nothing to do.
[NOTE] molenc.11.4.0 is not installed.

The following actions will be performed:
=== downgrade 1 package
  - downgrade dune                3.4.1 to 2.9.3 [required by molenc]
=== recompile 2 packages
  - recompile ounit2              2.2.0 (pinned) [uses dune]
  - recompile stdlib-shims        0.3.0          [uses dune]
=== install 44 packages
  - install   base                v0.15.0        [required by owl]
  - install   batteries           3.5.1          [required by molenc]
  - install   bigarray-compat     1.1.0          [required by ctypes]
  - install   bst                 7.0.0          [required by molenc]
  - install   camltc              0.9.8          [required by dokeysto_camltc]
  - install   camlzip             1.11           [required by npy]
  - install   conf-autoconf       0.1            [required by cpu]
  - install   conf-graphviz       0.1            [required by molenc]
  - install   conf-openblas       0.2.1          [required by owl]
  - install   conf-pkg-config     2              [required by conf-zlib]
  - install   conf-python-3       1.0.0          [required by molenc]
  - install   conf-rdkit          1              [required by molenc]
  - install   conf-which          1              [required by conf-graphviz]
  - install   conf-zlib           1              [required by camlzip]
  - install   cpm                 12.0.0         [required by molenc]
  - install   cppo                1.6.9          [required by lwt]
  - install   cpu                 2.0.0          [required by parany]
  - install   csexp               1.5.1          [required by dune-configurator]
  - install   ctypes              0.20.1         [required by owl]
  - install   dokeysto            4.0.0          [required by dokeysto_camltc]
  - install   dokeysto_camltc     4.0.0          [required by molenc]
  - install   dolog               4.0.0          [required by molenc]
  - install   dune-configurator   2.9.3          [required by owl]
  - install   eigen               0.3.3          [required by owl]
  - install   extunix             0.4.1          [required by dokeysto]
  - install   integers            0.7.0          [required by ctypes]
  - install   logs                0.7.0          [required by camltc]
  - install   lwt                 5.6.1          [required by camltc]
  - install   minicli             5.0.2          [required by molenc]
  - install   npy                 0.0.9          [required by owl]
  - install   num                 1.4            [required by batteries]
  - install   ocaml-compiler-libs v0.12.4        [required by ppxlib]
  - install   ocamlbuild          0.14.1         [required by batteries]
  - install   ocamlgraph          2.0.0          [required by molenc]
  - install   ocplib-endian       1.2            [required by lwt]
  - install   owl                 1.0.2-1        [required by molenc]
  - install   owl-base            1.0.2          [required by owl]
  - install   parany              12.2.0         [required by molenc]
  - install   ppx_derivers        1.2.1          [required by ppxlib]
  - install   ppxlib              0.27.0         [required by extunix]
  - install   result              1.5            [required by dune-configurator]
  - install   sexplib0            v0.15.1        [required by base]
  - install   stdio               v0.15.0        [required by owl]
  - install   topkg               1.0.5          [required by logs]

The following system packages will first need to be installed:
    autoconf graphviz liblapacke-dev libopenblas-dev librdkit-dev pkg-config python3 python3-rdkit zlib1g-dev

<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>

opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
  2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
  3. Attempt installation anyway, and permanently register that this external dependency is present, but not detectable
  4. Abort the installation

[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "graphviz" "liblapacke-dev" "libopenblas-dev" "librdkit-dev" "pkg-config" "python3" "python3-rdkit" "zlib1g-dev"
- debconf: delaying package configuration, since apt-utils is not installed
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- Selecting previously unselected package librdkit-dev.
- Preparing to unpack .../59-librdkit-dev_202009.4-1_amd64.deb ...
- Unpacking librdkit-dev (202009.4-1) ...
- Selecting previously unselected package libxml2:amd64.
- Preparing to unpack .../60-libxml2_2.9.10+dfsg-6.7+deb11u2_amd64.deb ...
- Unpacking libxml2:amd64 (2.9.10+dfsg-6.7+deb11u2) ...
- Selecting previously unselected package pkg-config.
- Preparing to unpack .../61-pkg-config_0.29.2-1_amd64.deb ...
- Unpacking pkg-config (0.29.2-1) ...
- Selecting previously unselected package python3-pkg-resources.
- Preparing to unpack .../62-python3-pkg-resources_52.0.0-4_all.deb ...
- Unpacking python3-pkg-resources (52.0.0-4) ...
- Selecting previously unselected package python3-numpy.
- Preparing to unpack .../63-python3-numpy_1%3a1.19.5-1_amd64.deb ...
- Unpacking python3-numpy (1:1.19.5-1) ...
- Selecting previously unselected package rdkit-data.
- Preparing to unpack .../64-rdkit-data_202009.4-1_all.deb ...
- Unpacking rdkit-data (202009.4-1) ...
- Selecting previously unselected package python3-rdkit.
- Preparing to unpack .../65-python3-rdkit_202009.4-1_amd64.deb ...
- Unpacking python3-rdkit (202009.4-1) ...
- Selecting previously unselected package shared-mime-info.
- Preparing to unpack .../66-shared-mime-info_2.0-1_amd64.deb ...
- Unpacking shared-mime-info (2.0-1) ...
- Selecting previously unselected package xdg-user-dirs.
- Preparing to unpack .../67-xdg-user-dirs_0.17-2_amd64.deb ...
- Unpacking xdg-user-dirs (0.17-2) ...
- Selecting previously unselected package zlib1g-dev:amd64.
- Preparing to unpack .../68-zlib1g-dev_1%3a1.2.11.dfsg-2+deb11u1_amd64.deb ...
- Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u1) ...
- Setting up media-types (4.0.0) ...
- Setting up libgraphite2-3:amd64 (1.3.14-1) ...
- Setting up libpixman-1-0:amd64 (0.40.0-1) ...
- Setting up fontconfig (2.13.1-4.2) ...
- Regenerating fonts cache... 
- done.
- Setting up libxrender1:amd64 (1:0.9.10-1) ...
- Setting up libicu67:amd64 (67.1-7) ...
- Setting up libdatrie1:amd64 (0.2.13-1) ...
- Setting up xdg-user-dirs (0.17-2) ...
- Setting up libxcb-render0:amd64 (1.14-3) ...
- Setting up libglib2.0-0:amd64 (2.66.8-1) ...
- No schema files found: doing nothing.
- Setting up libboost-iostreams1.74.0:amd64 (1.74.0-9) ...
- Setting up liblab-gamut1:amd64 (2.42.2-5) ...
- Setting up x11-common (1:7.7+22) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of start.
- Setting up fonts-freefont-ttf (20120503-10) ...
- Setting up libxcb-shm0:amd64 (1.14-3) ...
- Setting up rdkit-data (202009.4-1) ...
- Setting up libcairo2:amd64 (1.16.0-5) ...
- Setting up libmaeparser1:amd64 (1.2.4-1+b1) ...
- Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4+b1) ...
- Setting up autotools-dev (20180224.1+nmu1) ...
- Setting up libglib2.0-data (2.66.8-1) ...
- Setting up libpathplan4:amd64 (2.42.2-5) ...
- Setting up libann0 (1.1.2+doc-7) ...
- Setting up libsigsegv2:amd64 (2.13-1) ...
- Setting up libfribidi0:amd64 (1.0.8-2+deb11u1) ...
- Setting up pkg-config (0.29.2-1) ...
- Setting up libltdl7:amd64 (2.4.6-15) ...
- Setting up libgfortran5:amd64 (10.2.1-6) ...
- Setting up libboost-serialization1.74.0:amd64 (1.74.0-9) ...
- Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u1) ...
- Setting up libcoordgen1:amd64 (1.4.2-1) ...
- Setting up fonts-liberation (1:1.07.4-11) ...
- Setting up libmpdec3:amd64 (2.5.1-1) ...
- Setting up libharfbuzz0b:amd64 (2.7.4-1) ...
- Setting up libthai-data (0.1.28-3) ...
- Setting up libcdt5:amd64 (2.42.2-5) ...
- Setting up libcgraph6:amd64 (2.42.2-5) ...
- Setting up libboost-python1.74.0 (1.74.0-9) ...
- Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u2) ...
- Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ...
- Setting up libpython3-stdlib:amd64 (3.9.2-3) ...
- Setting up libgts-bin (0.7.6+darcs121130-4+b1) ...
- Setting up libice6:amd64 (2:1.0.10-1) ...
- Setting up libopenblas0-pthread:amd64 (0.3.13+ds-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode
- Setting up m4 (1.4.18-5) ...
- Setting up libthai0:amd64 (0.1.28-3) ...
- Setting up libpython3.9:amd64 (3.9.2-1) ...
- Setting up libtmglib3:amd64 (3.9.0-3) ...
- Setting up shared-mime-info (2.0-1) ...
- Setting up autoconf (2.69-14) ...
- Setting up libgvpr2:amd64 (2.42.2-5) ...
- Setting up libopenblas0:amd64 (0.3.13+ds-3) ...
- Setting up liblapacke:amd64 (3.9.0-3) ...
- Setting up libsm6:amd64 (2:1.2.3-1) ...
- Setting up python3.9 (3.9.2-1) ...
- Setting up automake (1:1.16.3-2) ...
- update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
- Setting up libopenblas-pthread-dev:amd64 (0.3.13+ds-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode
- Setting up librdkit1 (202009.4-1) ...
- Setting up libpango-1.0-0:amd64 (1.46.2-3) ...
- Setting up python3 (3.9.2-3) ...
- running python rtupdate hooks for python3.9...
- running python post-rtupdate hooks for python3.9...
- Setting up libopenblas-dev:amd64 (0.3.13+ds-3) ...
- Setting up librdkit-dev (202009.4-1) ...
- Setting up libxt6:amd64 (1:1.2.0-1) ...
- Setting up libtmglib-dev:amd64 (3.9.0-3) ...
- Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ...
- Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ...
- Setting up python3-pkg-resources (52.0.0-4) ...
- Setting up libxmu6:amd64 (2:1.1.2-2+b3) ...
- Setting up liblapacke-dev:amd64 (3.9.0-3) ...
- Setting up libxaw7:amd64 (2:1.0.13-1.1) ...
- Setting up libgvc6 (2.42.2-5) ...
- Setting up python3-numpy (1:1.19.5-1) ...
- Setting up graphviz (2.42.2-5) ...
- Setting up python3-rdkit (202009.4-1) ...
- Processing triggers for libc-bin (2.31-13+deb11u3) ...

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved base.v0.15.0  (cached)
-> retrieved batteries.3.5.1  (cached)
-> retrieved bigarray-compat.1.1.0  (cached)
-> retrieved bst.7.0.0  (cached)
-> retrieved camltc.0.9.8  (cached)
-> retrieved camlzip.1.11  (cached)
-> retrieved cpm.12.0.0  (cached)
-> retrieved cppo.1.6.9  (cached)
-> retrieved cpu.2.0.0  (cached)
-> retrieved csexp.1.5.1  (cached)
-> retrieved ctypes.0.20.1  (cached)
-> retrieved dokeysto.4.0.0, dokeysto_camltc.4.0.0  (cached)
-> retrieved dolog.4.0.0  (cached)
-> installed conf-pkg-config.2
-> installed conf-openblas.0.2.1
-> installed conf-python-3.1.0.0
-> installed conf-rdkit.1
-> installed conf-which.1
-> installed conf-zlib.1
-> installed conf-autoconf.0.1
-> installed conf-graphviz.0.1
-> retrieved dune.2.9.3, dune-configurator.2.9.3  (cached)
-> installed camlzip.1.11
-> retrieved eigen.0.3.3  (cached)
-> retrieved extunix.0.4.1  (cached)
-> retrieved integers.0.7.0  (cached)
-> retrieved logs.0.7.0  (cached)
-> retrieved lwt.5.6.1  (cached)
-> retrieved minicli.5.0.2  (cached)
-> retrieved npy.0.0.9  (cached)
-> retrieved num.1.4  (cached)
-> retrieved ocaml-compiler-libs.v0.12.4  (cached)
-> retrieved ocamlbuild.0.14.1  (cached)
-> retrieved ocamlgraph.2.0.0  (cached)
-> retrieved ocplib-endian.1.2  (cached)
-> installed num.1.4
-> retrieved owl.1.0.2-1, owl-base.1.0.2  (cached)
-> retrieved parany.12.2.0  (cached)
-> retrieved ppx_derivers.1.2.1  (cached)
-> retrieved ppxlib.0.27.0  (cached)
-> retrieved result.1.5  (cached)
-> retrieved sexplib0.v0.15.1  (cached)
-> retrieved stdio.v0.15.0  (cached)
-> retrieved stdlib-shims.0.3.0  (cached)
-> retrieved topkg.1.0.5  (cached)
-> installed ocamlbuild.0.14.1
-> installed topkg.1.0.5
-> removed   ounit2.2.2.0
-> removed   stdlib-shims.0.3.0
-> removed   dune.3.4.1
-> installed dune.2.9.3
-> installed bigarray-compat.1.1.0
-> installed csexp.1.5.1
-> installed dolog.4.0.0
-> installed minicli.5.0.2
-> installed npy.0.0.9
-> installed ppx_derivers.1.2.1
-> installed stdlib-shims.0.3.0
-> installed result.1.5
-> installed cppo.1.6.9
-> installed ocaml-compiler-libs.v0.12.4
-> installed sexplib0.v0.15.1
-> installed integers.0.7.0
-> installed ounit2.2.2.0
-> installed ocplib-endian.1.2
-> installed cpu.2.0.0
-> installed ocamlgraph.2.0.0
-> installed dune-configurator.2.9.3
-> installed parany.12.2.0
-> installed owl-base.1.0.2
-> installed lwt.5.6.1
-> installed logs.0.7.0
-> installed base.v0.15.0
-> installed stdio.v0.15.0
-> installed camltc.0.9.8
-> installed ctypes.0.20.1
-> installed ppxlib.0.27.0
-> installed extunix.0.4.1
-> installed batteries.3.5.1
-> installed dokeysto.4.0.0
-> installed bst.7.0.0
-> installed dokeysto_camltc.4.0.0
-> installed cpm.12.0.0
-> installed eigen.0.3.3
-> installed owl.1.0.2-1
Done.
# Run eval $(opam env) to update the current shell environment
The following actions will be performed:
=== install 1 package
  - install molenc 11.4.0

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing  1/3:
-> retrieved molenc.11.4.0  (cached)
Processing  2/3: [molenc: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "molenc" "-j" "31" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
-> compiled  molenc.11.4.0
Processing  3/3: [molenc: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc.sh" "/home/opam/.opam/4.14/bin/molenc.sh" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_common.py" "/home/opam/.opam/4.14/bin/molenc_common.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_lizard.py" "/home/opam/.opam/4.14/bin/molenc_lizard.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.py" "/home/opam/.opam/4.14/bin/molenc_scan.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_type_atoms.py" "/home/opam/.opam/4.14/bin/molenc_type_atoms.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/smi2png.py" "/home/opam/.opam/4.14/bin/molenc_smi2png.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
-> installed molenc.11.4.0
Done.
# Run eval $(opam env) to update the current shell environment
2022-07-27 05:04.35 ---> saved as "25f888ede21173ce0c632fbe4617fa5886fb3a1600cbccb08d87cc9e561570b5"

/home/opam: (run (network host)
                 (shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian bullseye InRelease
- Hit:2 http://deb.debian.org/debian-security bullseye-security InRelease
- Hit:3 http://deb.debian.org/debian bullseye-updates InRelease
- Reading package lists...
- 
2022-07-27 05:04.41 ---> saved as "580501abb89d781941de7abd0cb9b7ba336df6374cbe90201cdfa0e84c6c40f7"

/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
                 (network host)
                 (shell  "opam remove molenc.11.4.0 && opam install --deps-only --with-test molenc.11.4.0 && opam install -v --with-test molenc.11.4.0;\
                        \n        res=$?;\
                        \n        test \"$res\" != 31 && exit \"$res\";\
                        \n        export OPAMCLI=2.0;\
                        \n        build_dir=$(opam var prefix)/.opam-switch/build;\
                        \n        failed=$(ls \"$build_dir\");\
                        \n        for pkg in $failed; do\
                        \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
                        \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
                        \n          fi;\
                        \n        done;\
                        \n        exit 1"))
The following actions will be performed:
=== remove 1 package
  - remove molenc 11.4.0

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> removed   molenc.11.4.0
Done.
# Run eval $(opam env) to update the current shell environment
Nothing to do.
# Run eval $(opam env) to update the current shell environment
The following actions will be performed:
=== install 1 package
  - install molenc 11.4.0

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing  1/3:
-> retrieved molenc.11.4.0  (cached)
Processing  2/3: [molenc: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "molenc" "-j" "31" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
-> compiled  molenc.11.4.0
Processing  3/3: [molenc: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc.sh" "/home/opam/.opam/4.14/bin/molenc.sh" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_common.py" "/home/opam/.opam/4.14/bin/molenc_common.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_lizard.py" "/home/opam/.opam/4.14/bin/molenc_lizard.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.py" "/home/opam/.opam/4.14/bin/molenc_scan.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_type_atoms.py" "/home/opam/.opam/4.14/bin/molenc_type_atoms.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/smi2png.py" "/home/opam/.opam/4.14/bin/molenc_smi2png.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
-> installed molenc.11.4.0
Done.
# Run eval $(opam env) to update the current shell environment
2022-07-27 05:05.58 ---> saved as "9ce15f3873040328f4561b54591a2b8d44ef3a26f6751390d64a8d6b160abb13"
Job succeeded
2022-07-27 05:08.18: Job succeeded