- github
- ocaml
- opam-repository
- 19c70f
- compilers,4.14,dune-configurator.3.22.0~alpha2,revdeps,linwrap.5.1.1
(not at the head of any monitored branch or PR)
2026-03-16 19:15.32: New job: test linwrap.5.1.1 with dune-configurator.3.22.0~alpha2, using opam dev
from https://github.com/ocaml/opam-repository.git#refs/pull/29547/head (19c70fd6a788b154ec5e9fe26bca1d12fb2519be)
on debian-13-ocaml-4.14/amd64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/29547/head" && git reset --hard 19c70fd6
git fetch origin master
git merge --no-edit 4f056bfedf536e66065c3783e694e6aa0b38261a
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn dune-configurator.3.22.0~alpha2 3.22.0~alpha2
RUN opam reinstall dune-configurator.3.22.0~alpha2; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'dune-configurator.3.22.0~alpha2' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN opam reinstall linwrap.5.1.1; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'linwrap.5.1.1' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN (opam reinstall --with-test linwrap.5.1.1) || true
RUN opam reinstall --with-test --verbose linwrap.5.1.1; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'linwrap.5.1.1' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2026-03-16 19:15.32: Using cache hint "ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e-dune-configurator.3.22.0~alpha2-linwrap.5.1.1-19c70fd6a788b154ec5e9fe26bca1d12fb2519be"
2026-03-16 19:15.32: Using OBuilder spec:
((from ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "opam option solver=builtin-0install && opam config report"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn dune-configurator.3.22.0~alpha2 3.22.0~alpha2"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall dune-configurator.3.22.0~alpha2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'dune-configurator.3.22.0~alpha2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall linwrap.5.1.1;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'linwrap.5.1.1' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (network host)
(shell "(opam reinstall --with-test linwrap.5.1.1) || true"))
(run (shell "opam reinstall --with-test --verbose linwrap.5.1.1;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'linwrap.5.1.1' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2026-03-16 19:15.32: Waiting for resource in pool OCluster
2026-03-17 00:59.53: Waiting for worker…
2026-03-17 01:01.33: Got resource from pool OCluster
Building on odawa.caelum.ci.dev
All commits already cached
HEAD is now at 4f056bfedf Merge pull request #29543 from Zaneham/add-olint-0.1.0
Updating 4f056bfedf..19c70fd6a7
Fast-forward
.../chrome-trace/chrome-trace.3.22.0~alpha2/opam | 39 +++++++++++
.../dune-action-plugin.3.22.0~alpha2/opam | 52 +++++++++++++++
.../dune-action-trace.3.22.0~alpha2/opam | 39 +++++++++++
.../dune-build-info.3.22.0~alpha2/opam | 45 +++++++++++++
.../dune-configurator.3.22.0~alpha2/opam | 49 ++++++++++++++
packages/dune-glob/dune-glob.3.22.0~alpha2/opam | 42 ++++++++++++
.../dune-private-libs.3.22.0~alpha2/opam | 50 +++++++++++++++
.../dune-rpc-lwt/dune-rpc-lwt.3.22.0~alpha2/opam | 41 ++++++++++++
packages/dune-rpc/dune-rpc.3.22.0~alpha2/opam | 44 +++++++++++++
packages/dune-site/dune-site.3.22.0~alpha2/opam | 37 +++++++++++
packages/dune/dune.3.22.0~alpha2/opam | 75 ++++++++++++++++++++++
packages/dyn/dyn.3.22.0~alpha2/opam | 40 ++++++++++++
packages/fs-io/fs-io.3.22.0~alpha2/opam | 39 +++++++++++
packages/ocamlc-loc/ocamlc-loc.3.22.0~alpha2/opam | 43 +++++++++++++
packages/ordering/ordering.3.22.0~alpha2/opam | 38 +++++++++++
packages/stdune/stdune.3.22.0~alpha2/opam | 46 +++++++++++++
.../top-closure/top-closure.3.22.0~alpha2/opam | 38 +++++++++++
packages/xdg/xdg.3.22.0~alpha2/opam | 39 +++++++++++
18 files changed, 796 insertions(+)
create mode 100644 packages/chrome-trace/chrome-trace.3.22.0~alpha2/opam
create mode 100644 packages/dune-action-plugin/dune-action-plugin.3.22.0~alpha2/opam
create mode 100644 packages/dune-action-trace/dune-action-trace.3.22.0~alpha2/opam
create mode 100644 packages/dune-build-info/dune-build-info.3.22.0~alpha2/opam
create mode 100644 packages/dune-configurator/dune-configurator.3.22.0~alpha2/opam
create mode 100644 packages/dune-glob/dune-glob.3.22.0~alpha2/opam
create mode 100644 packages/dune-private-libs/dune-private-libs.3.22.0~alpha2/opam
create mode 100644 packages/dune-rpc-lwt/dune-rpc-lwt.3.22.0~alpha2/opam
create mode 100644 packages/dune-rpc/dune-rpc.3.22.0~alpha2/opam
create mode 100644 packages/dune-site/dune-site.3.22.0~alpha2/opam
create mode 100644 packages/dune/dune.3.22.0~alpha2/opam
create mode 100644 packages/dyn/dyn.3.22.0~alpha2/opam
create mode 100644 packages/fs-io/fs-io.3.22.0~alpha2/opam
create mode 100644 packages/ocamlc-loc/ocamlc-loc.3.22.0~alpha2/opam
create mode 100644 packages/ordering/ordering.3.22.0~alpha2/opam
create mode 100644 packages/stdune/stdune.3.22.0~alpha2/opam
create mode 100644 packages/top-closure/top-closure.3.22.0~alpha2/opam
create mode 100644 packages/xdg/xdg.3.22.0~alpha2/opam
(from ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e)
Unable to find image 'ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e' locally
docker.io/ocaml/opam@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e: Pulling from ocaml/opam
866771c43bf5: Already exists
1e49bea09367: Already exists
e793768537e6: Already exists
ed323d3d481a: Already exists
7df34a5cd5f1: Already exists
fd712d3eb935: Already exists
4b9fb8c99118: Already exists
9d9a01948b94: Already exists
0f1514f90b32: Already exists
e1ec5a753447: Already exists
03cc323e2f71: Already exists
c09c08ea9749: Already exists
b36b619f8e6b: Already exists
195344ca5274: Already exists
228ee78582a6: Already exists
504bde1c25b3: Already exists
9d8b1356c89f: Already exists
9d8b1356c89f: Already exists
568fb6dda155: Already exists
c499c9198aea: Already exists
048e5e358118: Already exists
871ca48eb45d: Already exists
4f4fb700ef54: Already exists
a5a2568b9df9: Already exists
068cf3106ac8: Already exists
559f54ec9b29: Already exists
798ffd96fde5: Already exists
e9a891bf80d7: Already exists
d720cfe12674: Already exists
c81c932f4a91: Already exists
79f24fa3bb11: Already exists
8c1debcd8c20: Already exists
1bb2cfea7250: Already exists
2b3d3ca75e4c: Already exists
557cacaf263c: Already exists
d10483022eef: Already exists
7b62a90d8223: Already exists
28ce8ea66e72: Already exists
d975909ea717: Already exists
5c215c69c247: Already exists
e7c082452a54: Already exists
d1a4c61b613c: Pulling fs layer
0195a6679dc6: Pulling fs layer
410dfa46d7be: Pulling fs layer
b7b221f39cbe: Pulling fs layer
b7b221f39cbe: Waiting
0195a6679dc6: Verifying Checksum
0195a6679dc6: Download complete
410dfa46d7be: Verifying Checksum
410dfa46d7be: Download complete
b7b221f39cbe: Verifying Checksum
b7b221f39cbe: Download complete
d1a4c61b613c: Verifying Checksum
d1a4c61b613c: Download complete
d1a4c61b613c: Pull complete
0195a6679dc6: Pull complete
410dfa46d7be: Pull complete
b7b221f39cbe: Pull complete
Digest: sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e
Status: Downloaded newer image for ocaml/opam@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e
2026-03-17 01:10.51 ---> using "32cd5b5baf995c02200cf270da597dbb25becd220af2c200c00b8b241a742195" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2026-03-17 01:10.51 ---> using "f3ed7bdbef828c9c0b079b10505c5f05c3c9adcca11ce5bf2dac2a4183e099d8" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Continue? [Y/n] y
[NOTE] The 'jobs' option was reset, its value was 71 and its new value will vary according to the current number of cores on your machine. You can restore the fixed value using:
opam option jobs=71 --global
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2026-03-17 01:10.51 ---> using "5bf6adb7b45bb7e0c215b8f509c71a8dae73a9a2060efcc27df9d4ef6c6d3350" from cache
/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version 2.5.0
# self-upgrade no
# system arch=x86_64 os=linux os-distribution=debian os-version=13
# solver builtin-0install
# install-criteria -changed,-count[avoid-version,solution]
# upgrade-criteria -count[avoid-version,solution]
# jobs 255
# repositories 1 (version-controlled)
# pinned 1 (version)
# current-switch 4.14
# invariant ["ocaml-base-compiler" {= "4.14.2"}]
# compiler-packages ocaml-base-compiler.4.14.2, ocaml-options-vanilla.1
# ocaml:native true
# ocaml:native-tools true
# ocaml:native-dynlink true
# ocaml:stubsdir /home/opam/.opam/4.14/lib/ocaml/stublibs:/home/opam/.opam/4.14/lib/ocaml
# ocaml:preinstalled false
# ocaml:compiler 4.14.2
2026-03-17 01:10.51 ---> using "0546f18fa5979677ee22eb9f2fcf19ab371564e845d317c2c70e41dd97dc22dd" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2026-03-17 01:10.51 ---> using "0a7188cbe95f4fe0ff26694977eb8794c975bdb534078da98a06d6c7373289b4" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2026-03-17 01:10.52 ---> using "bac94271bd2933048ab9ec083de7359406ae7b709f9e625d1aacde394e5b6b85" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2026-03-17 01:10.52 ---> using "1963dd823dac22306d550e5e9c9f971346ae5d465407ab924aff86b04a5120b3" from cache
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian trixie InRelease [140 kB]
- Get:2 http://deb.debian.org/debian trixie-updates InRelease [47.3 kB]
- Get:3 http://deb.debian.org/debian-security trixie-security InRelease [43.4 kB]
- Get:4 http://deb.debian.org/debian trixie/main amd64 Packages [9671 kB]
- Get:5 http://deb.debian.org/debian-security trixie-security/main amd64 Packages [111 kB]
- Fetched 10.0 MB in 1s (9490 kB/s)
- Reading package lists...
2026-03-17 01:10.52 ---> using "2bbae9754f2da55382df5a713573b4f2579b518f80eaef97920d7868fdc429fa" from cache
/home/opam: (run (shell "opam pin add -k version -yn dune-configurator.3.22.0~alpha2 3.22.0~alpha2"))
dune-configurator is now pinned to version 3.22.0~alpha2
2026-03-17 01:10.52 ---> using "f8e40a83da9892aad73dee81865c4f15b894fd506ea93a49d392900925751de3" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall dune-configurator.3.22.0~alpha2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'dune-configurator.3.22.0~alpha2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
dune-configurator.3.22.0~alpha2 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 3 packages
- install csexp 1.5.2 [required by dune-configurator]
- install dune 3.22.0~alpha2 [required by dune-configurator]
- install dune-configurator 3.22.0~alpha2 (pinned)
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved csexp.1.5.2 (cached)
-> retrieved dune.3.22.0~alpha2, dune-configurator.3.22.0~alpha2 (cached)
-> installed dune.3.22.0~alpha2
-> installed csexp.1.5.2
-> installed dune-configurator.3.22.0~alpha2
Done.
# To update the current shell environment, run: eval $(opam env)
2026-03-17 01:10.52 ---> using "67b904f2d73d6788680639795bd2fb0e77bfc952d186028cfe5ace97eb311540" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall linwrap.5.1.1;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'linwrap.5.1.1' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
linwrap.5.1.1 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 32 packages
- install base-bytes base [required by dokeysto]
- install batteries 3.10.0 [required by linwrap]
- install camlp-streams 5.0.1 [required by batteries]
- install camltc 0.9.8 [required by dokeysto_camltc]
- install conf-autoconf 0.2 [required by cpu]
- install conf-bash 1 [required by camltc]
- install conf-liblinear-tools 1.0.0 [required by linwrap]
- install conf-python-3 9.0.0 [required by linwrap]
- install conf-rdkit 1 [required by linwrap]
- install conf-which 1 [required by conf-liblinear-tools]
- install cpm 12.2.0 [required by linwrap]
- install cppo 1.8.0 [required by lwt]
- install cpu 2.0.0 [required by parany]
- install dokeysto 4.0.2 [required by dokeysto_camltc]
- install dokeysto_camltc 4.0.2 [required by linwrap]
- install dolog 4.0.0 [required by linwrap]
- install extunix 0.4.4 [required by dokeysto]
- install linwrap 5.1.1
- install logs 0.10.0 [required by camltc]
- install lwt 6.1.1 [required by camltc]
- install minicli 5.0.2 [required by linwrap]
- install num 1.6 [required by batteries]
- install ocaml-compiler-libs v0.12.4 [required by ppxlib]
- install ocamlbuild 0.16.1 [required by logs]
- install ocamlfind 1.9.8 [required by batteries]
- install ocplib-endian 1.2 [required by lwt]
- install parany 14.0.1 [required by linwrap]
- install ppx_derivers 1.2.1 [required by ppxlib]
- install ppxlib 0.37.0 [required by extunix]
- install sexplib0 v0.17.0 [required by ppxlib]
- install stdlib-shims 0.3.0 [required by ppxlib]
- install topkg 1.1.1 [required by logs]
The following system packages will first need to be installed:
autoconf liblinear-tools librdkit-dev python3 python3-rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "liblinear-tools" "librdkit-dev" "python3" "python3-rdkit"
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- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.2) ...
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- Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ...
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- Setting up libcoordgen3:amd64 (3.0.2-1+b2) ...
- Setting up libinchi1.07 (1.07.3+dfsg-1) ...
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- Setting up automake (1:1.17-4) ...
- update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
- Setting up liblapack3:amd64 (3.12.1-6) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up fontconfig-config (2.15.0-2.3) ...
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- Setting up libfontconfig1:amd64 (2.15.0-2.3) ...
- Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ...
- Setting up libpython3-stdlib:amd64 (3.13.5-1) ...
- Setting up liblinear-tools (2.3.0+dfsg-5+b2) ...
- Setting up python3.13 (3.13.5-2) ...
- Setting up python3 (3.13.5-1) ...
- running python rtupdate hooks for python3.13...
- running python post-rtupdate hooks for python3.13...
- Setting up libcairo2:amd64 (1.18.4-1+b1) ...
- Setting up python3-numpy (1:2.2.4+ds-1) ...
- Setting up librdkit1t64 (202503.1-4) ...
- Setting up python3-rdkit (202503.1-4) ...
- Setting up librdkit-dev (202503.1-4) ...
- Processing triggers for libc-bin (2.41-12+deb13u1) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved batteries.3.10.0 (cached)
-> retrieved camlp-streams.5.0.1 (cached)
-> retrieved camltc.0.9.8 (cached)
-> retrieved conf-python-3.9.0.0 (cached)
-> retrieved conf-rdkit.1 (cached)
-> retrieved cpm.12.2.0 (cached)
-> retrieved cppo.1.8.0 (cached)
-> retrieved cpu.2.0.0 (cached)
-> retrieved dokeysto.4.0.2, dokeysto_camltc.4.0.2 (cached)
-> installed conf-bash.1
-> installed conf-which.1
-> retrieved dolog.4.0.0 (cached)
-> installed conf-python-3.9.0.0
-> installed conf-autoconf.0.2
-> installed conf-liblinear-tools.1.0.0
-> retrieved extunix.0.4.4 (cached)
-> retrieved linwrap.5.1.1 (cached)
-> retrieved logs.0.10.0 (cached)
-> installed conf-rdkit.1
-> retrieved lwt.6.1.1 (cached)
-> installed camlp-streams.5.0.1
-> retrieved minicli.5.0.2 (cached)
-> retrieved num.1.6 (cached)
-> retrieved ocaml-compiler-libs.v0.12.4 (cached)
-> installed dolog.4.0.0
-> retrieved ocamlbuild.0.16.1 (cached)
-> retrieved ocamlfind.1.9.8 (cached)
-> retrieved ocplib-endian.1.2 (cached)
-> retrieved parany.14.0.1 (cached)
-> retrieved ppx_derivers.1.2.1 (cached)
-> installed minicli.5.0.2
-> retrieved ppxlib.0.37.0 (cached)
-> installed ppx_derivers.1.2.1
-> retrieved sexplib0.v0.17.0 (cached)
-> retrieved stdlib-shims.0.3.0 (cached)
-> retrieved topkg.1.1.1 (cached)
-> installed stdlib-shims.0.3.0
-> installed cppo.1.8.0
-> installed sexplib0.v0.17.0
-> installed ocaml-compiler-libs.v0.12.4
-> installed num.1.6
-> installed cpu.2.0.0
-> installed parany.14.0.1
-> installed ocamlfind.1.9.8
-> installed base-bytes.base
-> installed ocplib-endian.1.2
-> installed ocamlbuild.0.16.1
-> installed lwt.6.1.1
-> installed batteries.3.10.0
-> installed cpm.12.2.0
-> installed topkg.1.1.1
-> installed logs.0.10.0
-> installed ppxlib.0.37.0
-> installed camltc.0.9.8
-> installed extunix.0.4.4
-> installed dokeysto.4.0.2
-> installed dokeysto_camltc.4.0.2
-> installed linwrap.5.1.1
Done.
# To update the current shell environment, run: eval $(opam env)
2026-03-17 01:11.26 ---> saved as "881fcce5daa5bfe2d09b03424b9004edda6d9a8650907a46c54465beda7c8f27"
/home/opam: (run (network host)
(shell "(opam reinstall --with-test linwrap.5.1.1) || true"))
The following actions will be performed:
=== recompile 1 package
- recompile linwrap 5.1.1
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved linwrap.5.1.1 (https://opam.ocaml.org/cache)
-> removed linwrap.5.1.1
-> installed linwrap.5.1.1
Done.
# To update the current shell environment, run: eval $(opam env)
2026-03-17 01:11.32 ---> saved as "07bf70a6dfa3e5973aa8ed286765edc8a2ea5622f077d63f1429d0d0a405230e"
/home/opam: (run (shell "opam reinstall --with-test --verbose linwrap.5.1.1;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'linwrap.5.1.1' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
The following actions will be performed:
=== recompile 1 package
- recompile linwrap 5.1.1
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/4: [linwrap.5.1.1: extract]
-> retrieved linwrap.5.1.1 (cached)
Processing 2/4: [linwrap: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "linwrap" "-j" "255" (CWD=/home/opam/.opam/4.14/.opam-switch/build/linwrap.5.1.1)
-> compiled linwrap.5.1.1
-> removed linwrap.5.1.1
Processing 4/4: [linwrap: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/ecfp6.py" "/home/opam/.opam/4.14/bin/linwrap_ecfp6.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/linwrap.5.1.1)
-> installed linwrap.5.1.1
Done.
# To update the current shell environment, run: eval $(opam env)
2026-03-17 01:11.37 ---> saved as "1dafc7e13159bd88f12edd87abb24e1292866b475c20a76f5adbf9c79de743da"
Job succeeded
2026-03-17 01:11.44: Job succeeded