- github
- ocaml
- opam-repository
- 19c70f
- compilers,4.14,dune.3.22.0~alpha2,revdeps,hlarp.0.0.3
(not at the head of any monitored branch or PR)
2026-03-16 19:17.35: New job: test hlarp.0.0.3 with dune.3.22.0~alpha2, using opam dev
from https://github.com/ocaml/opam-repository.git#refs/pull/29547/head (19c70fd6a788b154ec5e9fe26bca1d12fb2519be)
on debian-13-ocaml-4.14/amd64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/29547/head" && git reset --hard 19c70fd6
git fetch origin master
git merge --no-edit 4f056bfedf536e66065c3783e694e6aa0b38261a
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn dune.3.22.0~alpha2 3.22.0~alpha2
RUN opam reinstall dune.3.22.0~alpha2; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'dune.3.22.0~alpha2' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN opam reinstall hlarp.0.0.3; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'hlarp.0.0.3' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN (opam reinstall --with-test hlarp.0.0.3) || true
RUN opam reinstall --with-test --verbose hlarp.0.0.3; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'hlarp.0.0.3' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2026-03-16 19:17.35: Using cache hint "ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e-dune.3.22.0~alpha2-hlarp.0.0.3-19c70fd6a788b154ec5e9fe26bca1d12fb2519be"
2026-03-16 19:17.35: Using OBuilder spec:
((from ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "opam option solver=builtin-0install && opam config report"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn dune.3.22.0~alpha2 3.22.0~alpha2"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall dune.3.22.0~alpha2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'dune.3.22.0~alpha2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall hlarp.0.0.3;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'hlarp.0.0.3' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (network host)
(shell "(opam reinstall --with-test hlarp.0.0.3) || true"))
(run (shell "opam reinstall --with-test --verbose hlarp.0.0.3;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'hlarp.0.0.3' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2026-03-16 19:17.35: Waiting for resource in pool OCluster
2026-03-17 04:56.59: Waiting for worker…
2026-03-17 04:59.21: Got resource from pool OCluster
Building on asteria.caelum.ci.dev
All commits already cached
HEAD is now at 4f056bfedf Merge pull request #29543 from Zaneham/add-olint-0.1.0
Updating 4f056bfedf..19c70fd6a7
Fast-forward
.../chrome-trace/chrome-trace.3.22.0~alpha2/opam | 39 +++++++++++
.../dune-action-plugin.3.22.0~alpha2/opam | 52 +++++++++++++++
.../dune-action-trace.3.22.0~alpha2/opam | 39 +++++++++++
.../dune-build-info.3.22.0~alpha2/opam | 45 +++++++++++++
.../dune-configurator.3.22.0~alpha2/opam | 49 ++++++++++++++
packages/dune-glob/dune-glob.3.22.0~alpha2/opam | 42 ++++++++++++
.../dune-private-libs.3.22.0~alpha2/opam | 50 +++++++++++++++
.../dune-rpc-lwt/dune-rpc-lwt.3.22.0~alpha2/opam | 41 ++++++++++++
packages/dune-rpc/dune-rpc.3.22.0~alpha2/opam | 44 +++++++++++++
packages/dune-site/dune-site.3.22.0~alpha2/opam | 37 +++++++++++
packages/dune/dune.3.22.0~alpha2/opam | 75 ++++++++++++++++++++++
packages/dyn/dyn.3.22.0~alpha2/opam | 40 ++++++++++++
packages/fs-io/fs-io.3.22.0~alpha2/opam | 39 +++++++++++
packages/ocamlc-loc/ocamlc-loc.3.22.0~alpha2/opam | 43 +++++++++++++
packages/ordering/ordering.3.22.0~alpha2/opam | 38 +++++++++++
packages/stdune/stdune.3.22.0~alpha2/opam | 46 +++++++++++++
.../top-closure/top-closure.3.22.0~alpha2/opam | 38 +++++++++++
packages/xdg/xdg.3.22.0~alpha2/opam | 39 +++++++++++
18 files changed, 796 insertions(+)
create mode 100644 packages/chrome-trace/chrome-trace.3.22.0~alpha2/opam
create mode 100644 packages/dune-action-plugin/dune-action-plugin.3.22.0~alpha2/opam
create mode 100644 packages/dune-action-trace/dune-action-trace.3.22.0~alpha2/opam
create mode 100644 packages/dune-build-info/dune-build-info.3.22.0~alpha2/opam
create mode 100644 packages/dune-configurator/dune-configurator.3.22.0~alpha2/opam
create mode 100644 packages/dune-glob/dune-glob.3.22.0~alpha2/opam
create mode 100644 packages/dune-private-libs/dune-private-libs.3.22.0~alpha2/opam
create mode 100644 packages/dune-rpc-lwt/dune-rpc-lwt.3.22.0~alpha2/opam
create mode 100644 packages/dune-rpc/dune-rpc.3.22.0~alpha2/opam
create mode 100644 packages/dune-site/dune-site.3.22.0~alpha2/opam
create mode 100644 packages/dune/dune.3.22.0~alpha2/opam
create mode 100644 packages/dyn/dyn.3.22.0~alpha2/opam
create mode 100644 packages/fs-io/fs-io.3.22.0~alpha2/opam
create mode 100644 packages/ocamlc-loc/ocamlc-loc.3.22.0~alpha2/opam
create mode 100644 packages/ordering/ordering.3.22.0~alpha2/opam
create mode 100644 packages/stdune/stdune.3.22.0~alpha2/opam
create mode 100644 packages/top-closure/top-closure.3.22.0~alpha2/opam
create mode 100644 packages/xdg/xdg.3.22.0~alpha2/opam
(from ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e)
2026-03-17 04:59.25 ---> using "32cd5b5baf995c02200cf270da597dbb25becd220af2c200c00b8b241a742195" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2026-03-17 04:59.25 ---> using "f3ed7bdbef828c9c0b079b10505c5f05c3c9adcca11ce5bf2dac2a4183e099d8" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Continue? [Y/n] y
[NOTE] The 'jobs' option was reset, its value was 71 and its new value will vary according to the current number of cores on your machine. You can restore the fixed value using:
opam option jobs=71 --global
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2026-03-17 04:59.25 ---> using "5bf6adb7b45bb7e0c215b8f509c71a8dae73a9a2060efcc27df9d4ef6c6d3350" from cache
/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version 2.5.0
# self-upgrade no
# system arch=x86_64 os=linux os-distribution=debian os-version=13
# solver builtin-0install
# install-criteria -changed,-count[avoid-version,solution]
# upgrade-criteria -count[avoid-version,solution]
# jobs 255
# repositories 1 (version-controlled)
# pinned 1 (version)
# current-switch 4.14
# invariant ["ocaml-base-compiler" {= "4.14.2"}]
# compiler-packages ocaml-base-compiler.4.14.2, ocaml-options-vanilla.1
# ocaml:native true
# ocaml:native-tools true
# ocaml:native-dynlink true
# ocaml:stubsdir /home/opam/.opam/4.14/lib/ocaml/stublibs:/home/opam/.opam/4.14/lib/ocaml
# ocaml:preinstalled false
# ocaml:compiler 4.14.2
2026-03-17 04:59.25 ---> using "0546f18fa5979677ee22eb9f2fcf19ab371564e845d317c2c70e41dd97dc22dd" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2026-03-17 04:59.25 ---> using "0a7188cbe95f4fe0ff26694977eb8794c975bdb534078da98a06d6c7373289b4" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2026-03-17 04:59.26 ---> using "bac94271bd2933048ab9ec083de7359406ae7b709f9e625d1aacde394e5b6b85" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2026-03-17 04:59.26 ---> using "1963dd823dac22306d550e5e9c9f971346ae5d465407ab924aff86b04a5120b3" from cache
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian trixie InRelease [140 kB]
- Get:2 http://deb.debian.org/debian trixie-updates InRelease [47.3 kB]
- Get:3 http://deb.debian.org/debian-security trixie-security InRelease [43.4 kB]
- Get:4 http://deb.debian.org/debian trixie/main amd64 Packages [9671 kB]
- Get:5 http://deb.debian.org/debian-security trixie-security/main amd64 Packages [111 kB]
- Fetched 10.0 MB in 1s (10.8 MB/s)
- Reading package lists...
-
2026-03-17 04:59.26 ---> using "2bbae9754f2da55382df5a713573b4f2579b518f80eaef97920d7868fdc429fa" from cache
/home/opam: (run (shell "opam pin add -k version -yn dune.3.22.0~alpha2 3.22.0~alpha2"))
dune is now pinned to version 3.22.0~alpha2
2026-03-17 04:59.26 ---> using "3b312e1ba2e2d3ce6c50234ba2e62c6d827f15439acf5c47c65286f0b2bce15a" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall dune.3.22.0~alpha2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'dune.3.22.0~alpha2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
dune.3.22.0~alpha2 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 1 package
- install dune 3.22.0~alpha2 (pinned)
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved dune.3.22.0~alpha2 (cached)
-> installed dune.3.22.0~alpha2
Done.
# To update the current shell environment, run: eval $(opam env)
2026-03-17 04:59.26 ---> using "79a7862cc80cedc04a487927a5645f883e0c17c692a64a036ab827a7afe98a62" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall hlarp.0.0.3;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'hlarp.0.0.3' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
hlarp.0.0.3 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 8 packages
- install cmdliner 1.3.0 [required by hlarp]
- install hlarp 0.0.3
- install nonstd 0.0.1 [required by hlarp]
- install ocamlbuild 0.16.1 [required by hlarp]
- install ocamlfind 1.9.8 [required by hlarp]
- install oml 0.0.7 [required by hlarp]
- install re 1.14.0 [required by hlarp]
- install topkg 1.1.1 [required by oml]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved cmdliner.1.3.0 (cached)
-> retrieved hlarp.0.0.3 (https://opam.ocaml.org/cache)
-> retrieved nonstd.0.0.1 (https://opam.ocaml.org/cache)
-> retrieved ocamlbuild.0.16.1 (cached)
-> retrieved ocamlfind.1.9.8 (cached)
-> retrieved oml.0.0.7 (cached)
-> retrieved re.1.14.0 (cached)
-> retrieved topkg.1.1.1 (cached)
-> installed re.1.14.0
-> installed cmdliner.1.3.0
-> installed ocamlfind.1.9.8
-> installed nonstd.0.0.1
-> installed ocamlbuild.0.16.1
-> installed topkg.1.1.1
-> installed oml.0.0.7
-> installed hlarp.0.0.3
Done.
# To update the current shell environment, run: eval $(opam env)
2026-03-17 04:59.44 ---> saved as "3bce389ee79337986c36249838d3f25a3ba6db90052420b22b5406c70c3145e8"
/home/opam: (run (network host)
(shell "(opam reinstall --with-test hlarp.0.0.3) || true"))
The following actions will be performed:
=== recompile 1 package
- recompile hlarp 0.0.3
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved hlarp.0.0.3 (https://opam.ocaml.org/cache)
-> removed hlarp.0.0.3
-> installed hlarp.0.0.3
Done.
# To update the current shell environment, run: eval $(opam env)
2026-03-17 04:59.51 ---> saved as "3cf074796d8ab7cafeb25a6a21dac249e901514dd32c2c40dd2914fb377fab52"
/home/opam: (run (shell "opam reinstall --with-test --verbose hlarp.0.0.3;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'hlarp.0.0.3' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
The following actions will be performed:
=== recompile 1 package
- recompile hlarp 0.0.3
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/4: [hlarp.0.0.3: extract]
-> retrieved hlarp.0.0.3 (cached)
Processing 2/4: [hlarp: make]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "make" (CWD=/home/opam/.opam/4.14/.opam-switch/build/hlarp.0.0.3)
- ocamlbuild -use-ocamlfind -package nonstd -package re -package cmdliner -package oml -package re.posix -package re.glob \
- -I src/app -I src/lib hlarp.cma hlarp.cmxs hlarp.cmxa hlarp_cli.native
- + ocamlfind ocamlc -config
- + ocamlfind ocamldep -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -modules src/lib/std.ml > src/lib/std.ml.depends
- + ocamlfind ocamldep -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -modules src/lib/seq2HLA.ml > src/lib/seq2HLA.ml.depends
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/std.cmo src/lib/std.ml
- + ocamlfind ocamldep -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -modules src/lib/optiType.ml > src/lib/optiType.ml.depends
- + ocamlfind ocamldep -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -modules src/lib/athlates.ml > src/lib/athlates.ml.depends
- + ocamlfind ocamldep -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -modules src/lib/prohlatype.ml > src/lib/prohlatype.ml.depends
- + ocamlfind ocamldep -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -modules src/lib/compare.ml > src/lib/compare.ml.depends
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/athlates.cmo src/lib/athlates.ml
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/athlates.cmo src/lib/athlates.ml
- File "src/lib/athlates.ml", line 6, characters 21-41:
- 6 | let filename_regex = Re_posix.compile_pat ("([^/]+)/[^/]+" ^ suffix)
- ^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Re_posix
- Use Re.Posix
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/optiType.cmo src/lib/optiType.ml
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/optiType.cmo src/lib/optiType.ml
- File "src/lib/optiType.ml", line 11, characters 21-41:
- 11 | let filename_regex = Re_posix.compile_pat ("([^/]+)/([^/]+)/[^/]+" ^ suffix)
- ^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Re_posix
- Use Re.Posix
- File "src/lib/optiType.ml", line 43, characters 29-41:
- 43 | let glob_regex = Re.compile (Re_glob.glob ("*" ^ suffix))
- ^^^^^^^^^^^^
- Alert deprecated: module Re_glob
- Use Re.Glob
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/prohlatype.cmo src/lib/prohlatype.ml
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/prohlatype.cmo src/lib/prohlatype.ml
- File "src/lib/prohlatype.ml", line 9, characters 2-22:
- 9 | Re_posix.compile_pat ("([^/]+)/([^/]+)_[^/]+(_(nuc|gen))?" ^ suffix)
- ^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Re_posix
- Use Re.Posix
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/seq2HLA.cmo src/lib/seq2HLA.ml
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/seq2HLA.cmo src/lib/seq2HLA.ml
- File "src/lib/seq2HLA.ml", line 5, characters 21-41:
- 5 | let filename_regex = Re_posix.compile_pat ("(.+)-Class(I{1,2})" ^ suffix)
- ^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Re_posix
- Use Re.Posix
- File "src/lib/seq2HLA.ml", line 59, characters 29-41:
- 59 | let glob_regex = Re.compile (Re_glob.glob ("*" ^ suffix))
- ^^^^^^^^^^^^
- Alert deprecated: module Re_glob
- Use Re.Glob
- + ocamlfind ocamldep -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -modules src/lib/output.ml > src/lib/output.ml.depends
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/compare.cmo src/lib/compare.ml
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/compare.cmo src/lib/compare.ml
- File "src/lib/compare.ml", line 141, characters 18-38:
- 141 | let colon_regex = Re_posix.compile_pat ":"
- ^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Re_posix
- Use Re.Posix
- File "src/lib/compare.ml", line 164, characters 12-32:
- 164 | Re.execp (Re_posix.compile_pat ("^" ^ p)) ai.Info.allele
- ^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Re_posix
- Use Re.Posix
- File "src/lib/compare.ml", line 189, characters 33-40:
- 189 | let specific_grouped_view ?loci ?classes ~typer1 ~ilist1 ~typer2 ~ilist2 =
- ^^^^^^^
- Warning 16 [unerasable-optional-argument]: this optional argument cannot be erased.
- File "src/lib/compare.ml", line 189, characters 27-31:
- 189 | let specific_grouped_view ?loci ?classes ~typer1 ~ilist1 ~typer2 ~ilist2 =
- ^^^^
- Warning 16 [unerasable-optional-argument]: this optional argument cannot be erased.
- File "src/lib/compare.ml", line 250, characters 7-21:
- 250 | if List.mem_assoc k acc then begin
- ^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label map was omitted in the application of this function.
- File "src/lib/compare.ml", line 301, characters 26-40:
- 301 | if not (List.mem_assoc k q) then Some k else None)
- ^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label map was omitted in the application of this function.
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/output.cmo src/lib/output.ml
- + ocamlfind ocamlc -pack -annot -bin-annot src/lib/std.cmo src/lib/seq2HLA.cmo src/lib/optiType.cmo src/lib/athlates.cmo src/lib/prohlatype.cmo src/lib/compare.cmo src/lib/output.cmo -o src/lib/hlarp.cmo
- + ocamlfind ocamlc -a -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib src/lib/hlarp.cmo -o src/lib/hlarp.cma
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -for-pack Hlarp -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/std.cmx src/lib/std.ml
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -for-pack Hlarp -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/athlates.cmx src/lib/athlates.ml
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -for-pack Hlarp -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/athlates.cmx src/lib/athlates.ml
- File "src/lib/athlates.ml", line 6, characters 21-41:
- 6 | let filename_regex = Re_posix.compile_pat ("([^/]+)/[^/]+" ^ suffix)
- ^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Re_posix
- Use Re.Posix
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -for-pack Hlarp -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/optiType.cmx src/lib/optiType.ml
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -for-pack Hlarp -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/optiType.cmx src/lib/optiType.ml
- File "src/lib/optiType.ml", line 11, characters 21-41:
- 11 | let filename_regex = Re_posix.compile_pat ("([^/]+)/([^/]+)/[^/]+" ^ suffix)
- ^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Re_posix
- Use Re.Posix
- File "src/lib/optiType.ml", line 43, characters 29-41:
- 43 | let glob_regex = Re.compile (Re_glob.glob ("*" ^ suffix))
- ^^^^^^^^^^^^
- Alert deprecated: module Re_glob
- Use Re.Glob
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -for-pack Hlarp -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/prohlatype.cmx src/lib/prohlatype.ml
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -for-pack Hlarp -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/prohlatype.cmx src/lib/prohlatype.ml
- File "src/lib/prohlatype.ml", line 9, characters 2-22:
- 9 | Re_posix.compile_pat ("([^/]+)/([^/]+)_[^/]+(_(nuc|gen))?" ^ suffix)
- ^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Re_posix
- Use Re.Posix
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -for-pack Hlarp -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/seq2HLA.cmx src/lib/seq2HLA.ml
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -for-pack Hlarp -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/seq2HLA.cmx src/lib/seq2HLA.ml
- File "src/lib/seq2HLA.ml", line 5, characters 21-41:
- 5 | let filename_regex = Re_posix.compile_pat ("(.+)-Class(I{1,2})" ^ suffix)
- ^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Re_posix
- Use Re.Posix
- File "src/lib/seq2HLA.ml", line 59, characters 29-41:
- 59 | let glob_regex = Re.compile (Re_glob.glob ("*" ^ suffix))
- ^^^^^^^^^^^^
- Alert deprecated: module Re_glob
- Use Re.Glob
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -for-pack Hlarp -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/compare.cmx src/lib/compare.ml
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -for-pack Hlarp -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/compare.cmx src/lib/compare.ml
- File "src/lib/compare.ml", line 141, characters 18-38:
- 141 | let colon_regex = Re_posix.compile_pat ":"
- ^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Re_posix
- Use Re.Posix
- File "src/lib/compare.ml", line 164, characters 12-32:
- 164 | Re.execp (Re_posix.compile_pat ("^" ^ p)) ai.Info.allele
- ^^^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Re_posix
- Use Re.Posix
- File "src/lib/compare.ml", line 189, characters 33-40:
- 189 | let specific_grouped_view ?loci ?classes ~typer1 ~ilist1 ~typer2 ~ilist2 =
- ^^^^^^^
- Warning 16 [unerasable-optional-argument]: this optional argument cannot be erased.
- File "src/lib/compare.ml", line 189, characters 27-31:
- 189 | let specific_grouped_view ?loci ?classes ~typer1 ~ilist1 ~typer2 ~ilist2 =
- ^^^^
- Warning 16 [unerasable-optional-argument]: this optional argument cannot be erased.
- File "src/lib/compare.ml", line 250, characters 7-21:
- 250 | if List.mem_assoc k acc then begin
- ^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label map was omitted in the application of this function.
- File "src/lib/compare.ml", line 301, characters 26-40:
- 301 | if not (List.mem_assoc k q) then Some k else None)
- ^^^^^^^^^^^^^^
- Warning 6 [labels-omitted]: label map was omitted in the application of this function.
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -for-pack Hlarp -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app -o src/lib/output.cmx src/lib/output.ml
- + touch src/lib/hlarp.mli ; if ocamlfind ocamlopt -pack -annot -bin-annot -I src/lib src/lib/std.cmx src/lib/seq2HLA.cmx src/lib/optiType.cmx src/lib/athlates.cmx src/lib/prohlatype.cmx src/lib/compare.cmx src/lib/output.cmx -o src/lib/hlarp.cmx ; then rm -f src/lib/hlarp.mli ; else rm -f src/lib/hlarp.mli ; exit 1; fi
- + ocamlfind ocamlopt -a -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib src/lib/hlarp.cmx -o src/lib/hlarp.cmxa
- + ocamlfind ocamlopt -shared -linkall -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib src/lib/hlarp.cmxa -o src/lib/hlarp.cmxs
- + ocamlfind ocamldep -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -modules src/app/hlarp_cli.ml > src/app/hlarp_cli.ml.depends
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/app -I src/lib -o src/app/hlarp_cli.cmo src/app/hlarp_cli.ml
- + ocamlfind ocamlc -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/app -I src/lib -o src/app/hlarp_cli.cmo src/app/hlarp_cli.ml
- File "src/app/hlarp_cli.ml", line 54, characters 15-19:
- 54 | Term.(ret (pure (`Help (`Plain, None)))
- ^^^^
- Alert deprecated: Cmdliner.Term.pure
- Use Term.const instead.
- File "src/app/hlarp_cli.ml", line 55, characters 10-14:
- 55 | , info project_name ~version ~doc ~man)
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 72, characters 10-14:
- 72 | , info tool ~doc:"Parse seq2HLA output")
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 78, characters 10-14:
- 78 | , info tool ~doc:"Parse OptiType output")
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 102, characters 10-14:
- 102 | , info tool ~doc:"Parse ATHLATES output")
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 108, characters 10-14:
- 108 | , info tool ~doc:"Parse Prohlatype output")
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 125, characters 10-14:
- 125 | , info "multiple"
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 195, characters 10-14:
- 195 | , info "compare"
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 199, characters 8-24:
- 199 | match Term.eval_choice help_cmd cmds with
- ^^^^^^^^^^^^^^^^
- Alert deprecated: Cmdliner.Term.eval_choice
- Use Cmd.group and one of Cmd.eval* instead.
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/app -I src/lib -o src/app/hlarp_cli.cmx src/app/hlarp_cli.ml
- + ocamlfind ocamlopt -c -annot -bin-annot -principal -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/app -I src/lib -o src/app/hlarp_cli.cmx src/app/hlarp_cli.ml
- File "src/app/hlarp_cli.ml", line 54, characters 15-19:
- 54 | Term.(ret (pure (`Help (`Plain, None)))
- ^^^^
- Alert deprecated: Cmdliner.Term.pure
- Use Term.const instead.
- File "src/app/hlarp_cli.ml", line 55, characters 10-14:
- 55 | , info project_name ~version ~doc ~man)
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 72, characters 10-14:
- 72 | , info tool ~doc:"Parse seq2HLA output")
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 78, characters 10-14:
- 78 | , info tool ~doc:"Parse OptiType output")
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 102, characters 10-14:
- 102 | , info tool ~doc:"Parse ATHLATES output")
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 108, characters 10-14:
- 108 | , info tool ~doc:"Parse Prohlatype output")
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 125, characters 10-14:
- 125 | , info "multiple"
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 195, characters 10-14:
- 195 | , info "compare"
- ^^^^
- Alert deprecated: Cmdliner.Term.info
- Use Cmd.info instead.
- File "src/app/hlarp_cli.ml", line 199, characters 8-24:
- 199 | match Term.eval_choice help_cmd cmds with
- ^^^^^^^^^^^^^^^^
- Alert deprecated: Cmdliner.Term.eval_choice
- Use Cmd.group and one of Cmd.eval* instead.
- + ocamlfind ocamlopt -linkpkg -package re.glob -package re.posix -package oml -package cmdliner -package re -package nonstd -I src/lib -I src/app src/lib/hlarp.cmx src/app/hlarp_cli.cmx -o src/app/hlarp_cli.native
- cp hlarp_cli.native hlarp
-> compiled hlarp.0.0.3
Processing 3/4: [hlarp: make uninstall]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "remove" "make" "uninstall" (CWD=/home/opam/.opam/4.14/.opam-switch/remove/hlarp.0.0.3)
- ocamlfind remove hlarp
- Removed /home/opam/.opam/4.14/lib/hlarp/META
- Removed /home/opam/.opam/4.14/lib/hlarp
-> removed hlarp.0.0.3
Processing 4/4: [hlarp: make install]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "make" "install" (CWD=/home/opam/.opam/4.14/.opam-switch/build/hlarp.0.0.3)
- ocamlfind install hlarp META \
- _build/src/lib/hlarp.a \
- _build/src/lib/hlarp.o \
- _build/src/lib/hlarp.cma \
- _build/src/lib/hlarp.cmi \
- _build/src/lib/hlarp.cmo \
- _build/src/lib/hlarp.cmx \
- _build/src/lib/hlarp.cmxa \
- _build/src/lib/hlarp.cmxs
- Installed /home/opam/.opam/4.14/lib/hlarp/hlarp.cmxs
- Installed /home/opam/.opam/4.14/lib/hlarp/hlarp.cmxa
- Installed /home/opam/.opam/4.14/lib/hlarp/hlarp.cmx
- Installed /home/opam/.opam/4.14/lib/hlarp/hlarp.cmo
- Installed /home/opam/.opam/4.14/lib/hlarp/hlarp.cmi
- Installed /home/opam/.opam/4.14/lib/hlarp/hlarp.cma
- Installed /home/opam/.opam/4.14/lib/hlarp/hlarp.o
- Installed /home/opam/.opam/4.14/lib/hlarp/hlarp.a
- Installed /home/opam/.opam/4.14/lib/hlarp/META
-> installed hlarp.0.0.3
Done.
# To update the current shell environment, run: eval $(opam env)
2026-03-17 04:59.58 ---> saved as "00d843b78ee135d2eee91988561821b57a0d9ac25c8adfa608c830750029ae61"
Job succeeded
2026-03-17 05:00.04: Job succeeded