- github
- ocaml
- opam-repository
- 24be28
- compilers,4.14,js_of_ocaml-ppx.5.8.2-floats,revdeps,biotk.0.0.0
(not at the head of any monitored branch or PR)
2024-11-25 17:10.20: New job: test biotk.0.0.0 with js_of_ocaml-ppx.5.8.2-floats, using opam dev
from https://github.com/ocaml/opam-repository.git#refs/pull/26591/head (24be28ca82f90d7175046d734a9c3e19765ec02b)
on debian-12-ocaml-4.14/amd64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/26591/head" && git reset --hard 24be28ca
git fetch origin master
git merge --no-edit e62e88dccc1d1181b3fa83b78e2bf462598afb92
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-12-ocaml-4.14@sha256:3b83406bd3604cbe91e1a7499b0a6b18dd710d949d68282fb558bf3d301d3e97
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
RUN uname -rs && opam exec -- ocaml -version && opam --version
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMSOLVERTIMEOUT="1000"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn js_of_ocaml-ppx.5.8.2-floats 5.8.2-floats
RUN opam reinstall js_of_ocaml-ppx.5.8.2-floats; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-12\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'js_of_ocaml-ppx.5.8.2-floats' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN opam option solver=builtin-0install
RUN opam reinstall biotk.0.0.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-12\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'biotk.0.0.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN opam option solver=builtin-0install
RUN (opam reinstall --with-test biotk.0.0.0) || true
RUN opam reinstall --with-test --verbose biotk.0.0.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-12\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'biotk.0.0.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2024-11-25 17:10.20: Using cache hint "ocaml/opam:debian-12-ocaml-4.14@sha256:3b83406bd3604cbe91e1a7499b0a6b18dd710d949d68282fb558bf3d301d3e97-js_of_ocaml-ppx.5.8.2-floats-biotk.0.0.0-24be28ca82f90d7175046d734a9c3e19765ec02b"
2024-11-25 17:10.20: Using OBuilder spec:
((from ocaml/opam:debian-12-ocaml-4.14@sha256:3b83406bd3604cbe91e1a7499b0a6b18dd710d949d68282fb558bf3d301d3e97)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "uname -rs && opam exec -- ocaml -version && opam --version"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMSOLVERTIMEOUT 1000)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn js_of_ocaml-ppx.5.8.2-floats 5.8.2-floats"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall js_of_ocaml-ppx.5.8.2-floats;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'js_of_ocaml-ppx.5.8.2-floats' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (shell "opam option solver=builtin-0install"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall biotk.0.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'biotk.0.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (shell "opam option solver=builtin-0install"))
(run (network host)
(shell "(opam reinstall --with-test biotk.0.0.0) || true"))
(run (shell "opam reinstall --with-test --verbose biotk.0.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'biotk.0.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2024-11-25 17:10.20: Waiting for resource in pool OCluster
2024-11-25 19:33.45: Waiting for worker…
2024-11-25 19:36.35: Got resource from pool OCluster
Building on x86-bm-c3.sw.ocaml.org
All commits already cached
Updating files: 63% (20730/32730)
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Updating files: 100% (32730/32730), done.
HEAD is now at e62e88dccc Merge pull request #26953 from shonfeder/revert-color-0.3.0
Merge made by the 'ort' strategy.
.../js_of_ocaml-compiler.5.8.2-floats/opam | 55 ++++++++++++++++++++++
.../js_of_ocaml-lwt.5.8.2-floats/opam | 48 +++++++++++++++++++
.../js_of_ocaml-ppx.5.8.2-floats/opam | 45 ++++++++++++++++++
.../opam | 45 ++++++++++++++++++
.../js_of_ocaml-toplevel.5.8.2-floats/opam | 48 +++++++++++++++++++
.../js_of_ocaml-tyxml.5.8.2-floats/opam | 49 +++++++++++++++++++
packages/js_of_ocaml/js_of_ocaml.5.8.2-floats/opam | 55 ++++++++++++++++++++++
7 files changed, 345 insertions(+)
create mode 100644 packages/js_of_ocaml-compiler/js_of_ocaml-compiler.5.8.2-floats/opam
create mode 100644 packages/js_of_ocaml-lwt/js_of_ocaml-lwt.5.8.2-floats/opam
create mode 100644 packages/js_of_ocaml-ppx/js_of_ocaml-ppx.5.8.2-floats/opam
create mode 100644 packages/js_of_ocaml-ppx_deriving_json/js_of_ocaml-ppx_deriving_json.5.8.2-floats/opam
create mode 100644 packages/js_of_ocaml-toplevel/js_of_ocaml-toplevel.5.8.2-floats/opam
create mode 100644 packages/js_of_ocaml-tyxml/js_of_ocaml-tyxml.5.8.2-floats/opam
create mode 100644 packages/js_of_ocaml/js_of_ocaml.5.8.2-floats/opam
(from ocaml/opam:debian-12-ocaml-4.14@sha256:3b83406bd3604cbe91e1a7499b0a6b18dd710d949d68282fb558bf3d301d3e97)
2024-11-25 19:36.44 ---> using "16c9fc8fd763c524ae1606da9019c341fc2748b0a1d360269689e19099d4c66f" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2024-11-25 19:36.44 ---> using "dc76677360fc29c4d8bf1d2fc59e91bd659a471f5215546d2c46525f28895691" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This development version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Continue? [Y/n] y
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] synchronised from file:///home/opam/opam-repository
2024-11-25 19:36.44 ---> using "7d4717c54b5a436d8872c4523c593bc2209d7f1c52ef4272d8ffd504e19df8eb" from cache
/home/opam: (run (shell "uname -rs && opam exec -- ocaml -version && opam --version"))
Linux 5.15.0-126-generic
The OCaml toplevel, version 4.14.2
2.4.0~alpha1~dev
2024-11-25 19:36.44 ---> using "eed228ef9df1494da428dd76220bc8e84328f2a92b449854563a0e1f6e459230" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMSOLVERTIMEOUT 1000)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2024-11-25 19:36.44 ---> using "47f59145123d90332e3042ad3d59df4e0cebc73f6273445f8f98e0719756be29" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2024-11-25 19:36.46 ---> using "3addf45bc7ae98d0d246baba53c56cf336ebfe9710cf9f470653286a9a1a6fd1" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2024-11-25 19:36.46 ---> using "78eb4e694a6638fceaeeb33e8e9590dd36363bd2868710b45f8eeae44aef4094" from cache
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian bookworm InRelease
- Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB]
- Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB]
- Get:4 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [205 kB]
- Fetched 309 kB in 0s (1102 kB/s)
- Reading package lists...
-
2024-11-25 19:36.46 ---> using "903497c9f79d650706c031b0b96e350f60a4637d8a2c85a504ae30efa87ac414" from cache
/home/opam: (run (shell "opam pin add -k version -yn js_of_ocaml-ppx.5.8.2-floats 5.8.2-floats"))
js_of_ocaml-ppx is now pinned to version 5.8.2-floats
2024-11-25 19:36.46 ---> using "422dcc8cf37a5c03994c169460ba66711f39b693eccbbcdd977ef95b46fe5796" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall js_of_ocaml-ppx.5.8.2-floats;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'js_of_ocaml-ppx.5.8.2-floats' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
js_of_ocaml-ppx.5.8.2-floats is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 18 packages
- install cmdliner 1.3.0 [required by js_of_ocaml-compiler]
- install dune 3.16.1 [required by js_of_ocaml-ppx]
- install gen 1.1 [required by sedlex]
- install js_of_ocaml 5.8.2-floats [required by js_of_ocaml-ppx]
- install js_of_ocaml-compiler 5.8.2-floats [required by js_of_ocaml]
- install js_of_ocaml-ppx 5.8.2-floats (pinned)
- install menhir 20240715 [required by js_of_ocaml-compiler]
- install menhirCST 20240715 [required by menhir]
- install menhirLib 20240715 [required by js_of_ocaml-compiler]
- install menhirSdk 20240715 [required by js_of_ocaml-compiler]
- install ocaml-compiler-libs v0.12.4 [required by ppxlib]
- install ppx_derivers 1.2.1 [required by ppxlib]
- install ppxlib 0.33.0 [required by js_of_ocaml-ppx]
- install sedlex 3.3 [required by js_of_ocaml-compiler]
- install seq base [required by yojson]
- install sexplib0 v0.17.0 [required by ppxlib]
- install stdlib-shims 0.3.0 [required by ppxlib]
- install yojson 2.2.2 [required by js_of_ocaml-compiler]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved cmdliner.1.3.0 (cached)
-> retrieved dune.3.16.1 (cached)
-> retrieved gen.1.1 (cached)
-> retrieved js_of_ocaml.5.8.2-floats, js_of_ocaml-compiler.5.8.2-floats, js_of_ocaml-ppx.5.8.2-floats (cached)
-> retrieved menhir.20240715, menhirCST.20240715, menhirLib.20240715, menhirSdk.20240715 (cached)
-> installed cmdliner.1.3.0
-> retrieved ocaml-compiler-libs.v0.12.4 (cached)
-> retrieved ppx_derivers.1.2.1 (cached)
-> retrieved ppxlib.0.33.0 (cached)
-> retrieved sedlex.3.3 (cached)
-> retrieved seq.base (cached)
-> installed seq.base
-> retrieved sexplib0.v0.17.0 (cached)
-> retrieved stdlib-shims.0.3.0 (cached)
-> retrieved yojson.2.2.2 (cached)
-> installed dune.3.16.1
-> installed menhirCST.20240715
-> installed ppx_derivers.1.2.1
-> installed stdlib-shims.0.3.0
-> installed menhirSdk.20240715
-> installed sexplib0.v0.17.0
-> installed gen.1.1
-> installed menhirLib.20240715
-> installed ocaml-compiler-libs.v0.12.4
-> installed yojson.2.2.2
-> installed menhir.20240715
-> installed ppxlib.0.33.0
-> installed sedlex.3.3
-> installed js_of_ocaml-compiler.5.8.2-floats
-> installed js_of_ocaml.5.8.2-floats
-> installed js_of_ocaml-ppx.5.8.2-floats
Done.
# To update the current shell environment, run: eval $(opam env)
2024-11-25 19:36.46 ---> using "8eb7fd5e4535d4f29f23c9eccb1c4fdbd4286e7b382bdda9e4c605e588bad61c" from cache
/home/opam: (run (shell "opam option solver=builtin-0install"))
Set to 'builtin-0install' the field solver in global configuration
2024-11-25 19:36.46 ---> using "a1b7c28d4f0f9bc779583e12c07913b0edd9bd79386127bb1c0fffd44173c6a4" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall biotk.0.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'biotk.0.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
biotk.0.0.0 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== downgrade 3 packages
- downgrade ppxlib 0.33.0 to 0.25.1 [required by ppx_csv_conv, ppx_deriving]
- downgrade sedlex 3.3 to 2.5 [required by js_of_ocaml-compiler]
- downgrade sexplib0 v0.17.0 to v0.14.0 [required by base, sexplib]
=== recompile 3 packages
- recompile js_of_ocaml 5.8.2-floats [uses js_of_ocaml-compiler]
- recompile js_of_ocaml-compiler 5.8.2-floats [uses ocamlfind]
- recompile js_of_ocaml-ppx 5.8.2-floats (pinned) [uses ppxlib]
=== install 87 packages
- install angstrom 0.16.1 [required by biotk]
- install angstrom-unix 0.16.1 [required by biotk]
- install base v0.14.3 [required by ppx_csv_conv]
- install base-bytes base [required by ocamlnet]
- install base64 3.5.1 [required by biocaml]
- install base_bigstring v0.14.0 [required by core_kernel]
- install base_quickcheck v0.14.1 [required by core_kernel]
- install bigstringaf 0.10.0 [required by angstrom]
- install bin_prot v0.14.1 [required by core_kernel]
- install biocaml 0.11.1 [required by biotk]
- install biotk 0.0.0
- install camlp-streams 5.0.1 [required by cfstream]
- install camlzip 1.13 [required by biocaml, ocamlnet]
- install cfstream 1.3.2 [required by biocaml]
- install conf-m4 1 [required by cfstream]
- install conf-pkg-config 3 [required by conf-zlib]
- install conf-zlib 1 [required by camlzip]
- install core v0.14.1 [required by biotk]
- install core_kernel v0.14.2 [required by biocaml]
- install cppo 1.7.0 [required by ppx_deriving]
- install csexp 1.5.2 [required by dune-configurator]
- install csvfields v0.14.0 [required by ppx_csv_conv]
- install dune-configurator 3.16.1 [required by bigstringaf]
- install fieldslib v0.14.0 [required by core_kernel]
- install fmt 0.9.0 [required by biotk]
- install gg 1.0.0 [required by vg]
- install jane-street-headers v0.14.0 [required by core_kernel]
- install jst-config v0.14.1 [required by core]
- install num 1.5-1 [required by csvfields]
- install ocaml-syntax-shims 1.0.0 [required by angstrom]
- install ocamlbuild 0.15.0 [required by otfm, ocamlify, fmt, etc.]
- install ocamlfind 1.9.6 [required by ppx_deriving, ocamlnet, fmt, etc.]
- install ocamlify 0.0.1 [required by biotk]
- install ocamlnet 4.1.9-2 [required by biotk]
- install octavius 1.2.2 [required by ppx_js_style]
- install otfm 0.4.0 [required by biotk]
- install parsexp v0.14.2 [required by sexplib]
- install ppx_assert v0.14.0 [required by core_kernel]
- install ppx_base v0.14.0 [required by core_kernel]
- install ppx_bench v0.14.1 [required by ppx_jane]
- install ppx_bin_prot v0.14.0 [required by ppx_jane]
- install ppx_cold v0.14.0 [required by ppx_base]
- install ppx_compare v0.14.0 [required by biocaml]
- install ppx_conv_func v0.14.0 [required by ppx_csv_conv]
- install ppx_csv_conv v0.14.0 [required by biotk]
- install ppx_custom_printf v0.14.1 [required by ppx_jane]
- install ppx_deriving 5.2.1 [required by biotk]
- install ppx_enumerate v0.14.0 [required by ppx_base]
- install ppx_expect v0.14.2 [required by ppx_jane]
- install ppx_fields_conv v0.14.2 [required by ppx_csv_conv]
- install ppx_fixed_literal v0.14.0 [required by ppx_jane]
- install ppx_hash v0.14.0 [required by core_kernel]
- install ppx_here v0.14.0 [required by ppx_jane]
- install ppx_inline_test v0.14.1 [required by core_kernel]
- install ppx_jane v0.14.0 [required by core, csvfields]
- install ppx_js_style v0.14.1 [required by ppx_base]
- install ppx_let v0.14.0 [required by ppx_jane]
- install ppx_module_timer v0.14.0 [required by ppx_jane]
- install ppx_optcomp v0.14.3 [required by core_kernel]
- install ppx_optional v0.14.0 [required by ppx_jane]
- install ppx_pipebang v0.14.0 [required by ppx_jane]
- install ppx_sexp_conv v0.14.3 [required by biocaml]
- install ppx_sexp_message v0.14.1 [required by core_kernel]
- install ppx_sexp_value v0.14.0 [required by ppx_jane]
- install ppx_stable v0.14.1 [required by ppx_jane]
- install ppx_string v0.14.1 [required by ppx_jane]
- install ppx_typerep_conv v0.14.2 [required by ppx_jane]
- install ppx_variants_conv v0.14.2 [required by ppx_jane]
- install re 1.12.0 [required by biocaml, tyxml]
- install result 1.5 [required by biotk]
- install rresult 0.7.0 [required by biotk]
- install sexplib v0.14.0 [required by biocaml]
- install spawn v0.17.0 [required by core]
- install splittable_random v0.14.0 [required by core_kernel]
- install stdio v0.14.0 [required by core_kernel]
- install stringext 1.6.0 [required by uri]
- install time_now v0.14.0 [required by core_kernel]
- install timezone v0.14.0 [required by core]
- install topkg 1.0.7 [required by otfm, fmt, vg]
- install typerep v0.14.0 [required by core_kernel]
- install tyxml 4.6.0 [required by biotk]
- install uchar 0.0.2 [required by sedlex]
- install uri 4.4.0 [required by biocaml]
- install uutf 1.0.3 [required by otfm, tyxml]
- install variantslib v0.14.0 [required by core_kernel]
- install vg 0.9.5 [required by biotk]
- install xmlm 1.4.0 [required by biocaml]
The following system packages will first need to be installed:
m4 pkg-config zlib1g-dev
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "m4" "pkg-config" "zlib1g-dev"
- debconf: delaying package configuration, since apt-utils is not installed
- Selecting previously unselected package libpkgconf3:amd64.
- (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 18745 files and directories currently installed.)
- Preparing to unpack .../0-libpkgconf3_1.8.1-1_amd64.deb ...
- Unpacking libpkgconf3:amd64 (1.8.1-1) ...
- Selecting previously unselected package m4.
- Preparing to unpack .../1-m4_1.4.19-3_amd64.deb ...
- Unpacking m4 (1.4.19-3) ...
- Selecting previously unselected package pkgconf-bin.
- Preparing to unpack .../2-pkgconf-bin_1.8.1-1_amd64.deb ...
- Unpacking pkgconf-bin (1.8.1-1) ...
- Selecting previously unselected package pkgconf:amd64.
- Preparing to unpack .../3-pkgconf_1.8.1-1_amd64.deb ...
- Unpacking pkgconf:amd64 (1.8.1-1) ...
- Selecting previously unselected package pkg-config:amd64.
- Preparing to unpack .../4-pkg-config_1.8.1-1_amd64.deb ...
- Unpacking pkg-config:amd64 (1.8.1-1) ...
- Selecting previously unselected package zlib1g-dev:amd64.
- Preparing to unpack .../5-zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ...
- Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ...
- Setting up m4 (1.4.19-3) ...
- Setting up libpkgconf3:amd64 (1.8.1-1) ...
- Setting up pkgconf-bin (1.8.1-1) ...
- Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ...
- Setting up pkgconf:amd64 (1.8.1-1) ...
- Setting up pkg-config:amd64 (1.8.1-1) ...
- Processing triggers for libc-bin (2.36-9+deb12u9) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved angstrom.0.16.1, angstrom-unix.0.16.1 (cached)
-> retrieved base.v0.14.3 (cached)
-> retrieved base64.3.5.1 (cached)
-> retrieved base_bigstring.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/base_bigstring-v0.14.0.tar.gz)
-> installed base64.3.5.1
-> retrieved base_quickcheck.v0.14.1 (https://github.com/janestreet/base_quickcheck/archive/v0.14.1.tar.gz)
-> retrieved bigstringaf.0.10.0 (cached)
-> retrieved bin_prot.v0.14.1 (https://github.com/janestreet/bin_prot/archive/refs/tags/v0.14.1.tar.gz)
-> retrieved biocaml.0.11.1 (https://github.com/biocaml/biocaml/archive/v0.11.1.tar.gz)
-> retrieved biotk.0.0.0 (https://github.com/pveber/biotk/releases/download/v0.0.0/biotk-v0.0.0.tbz)
-> retrieved camlp-streams.5.0.1 (cached)
-> retrieved camlzip.1.13 (cached)
-> installed camlp-streams.5.0.1
-> retrieved cfstream.1.3.2 (https://github.com/biocaml/cfstream/archive/refs/tags/1.3.2.tar.gz)
-> installed conf-pkg-config.3
-> installed conf-m4.1
-> installed conf-zlib.1
-> retrieved core.v0.14.1 (https://github.com/janestreet/core/archive/v0.14.1.tar.gz)
-> retrieved core_kernel.v0.14.2 (https://github.com/janestreet/core_kernel/archive/v0.14.2.tar.gz)
-> retrieved cppo.1.7.0 (cached)
-> retrieved csexp.1.5.2 (cached)
-> retrieved csvfields.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/csvfields-v0.14.0.tar.gz)
-> installed csexp.1.5.2
-> retrieved dune-configurator.3.16.1 (cached)
-> installed cppo.1.7.0
-> retrieved fieldslib.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/fieldslib-v0.14.0.tar.gz)
-> retrieved fmt.0.9.0 (cached)
-> retrieved gg.1.0.0 (cached)
-> retrieved jane-street-headers.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/jane-street-headers-v0.14.0.tar.gz)
-> installed jane-street-headers.v0.14.0
-> retrieved js_of_ocaml.5.8.2-floats, js_of_ocaml-compiler.5.8.2-floats, js_of_ocaml-ppx.5.8.2-floats (cached)
-> installed dune-configurator.3.16.1
-> retrieved jst-config.v0.14.1 (https://github.com/janestreet/jst-config/archive/refs/tags/v0.14.1.tar.gz)
-> retrieved num.1.5-1 (cached)
-> retrieved ocaml-syntax-shims.1.0.0 (cached)
-> retrieved ocamlbuild.0.15.0 (cached)
-> installed bigstringaf.0.10.0
-> retrieved ocamlfind.1.9.6 (cached)
-> installed ocaml-syntax-shims.1.0.0
-> retrieved ocamlify.0.0.1 (https://download.ocamlcore.org/ocamlify/ocamlify/0.0.1/ocamlify-0.0.1.tar.gz)
-> installed num.1.5-1
-> installed angstrom.0.16.1
-> installed angstrom-unix.0.16.1
-> retrieved ocamlnet.4.1.9-2 (http://download.camlcity.org/download/ocamlnet-4.1.9.tar.gz)
-> retrieved octavius.1.2.2 (cached)
-> retrieved otfm.0.4.0 (cached)
-> retrieved parsexp.v0.14.2 (https://github.com/janestreet/parsexp/archive/refs/tags/v0.14.2.tar.gz)
-> retrieved ppx_assert.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_assert-v0.14.0.tar.gz)
-> retrieved ppx_base.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_base-v0.14.0.tar.gz)
-> retrieved ppx_bench.v0.14.1 (https://github.com/janestreet/ppx_bench/archive/v0.14.1.tar.gz)
-> installed ocamlfind.1.9.6
-> installed base-bytes.base
-> installed octavius.1.2.2
-> retrieved ppx_bin_prot.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_bin_prot-v0.14.0.tar.gz)
-> installed ocamlbuild.0.15.0
-> retrieved ppx_cold.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_cold-v0.14.0.tar.gz)
-> retrieved ppx_compare.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_compare-v0.14.0.tar.gz)
-> retrieved ppx_conv_func.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_conv_func-v0.14.0.tar.gz)
-> installed camlzip.1.13
-> retrieved ppx_csv_conv.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_csv_conv-v0.14.0.tar.gz)
-> retrieved ppx_custom_printf.v0.14.1 (https://github.com/janestreet/ppx_custom_printf/archive/v0.14.1.tar.gz)
-> retrieved ppx_deriving.5.2.1 (https://github.com/ocaml-ppx/ppx_deriving/releases/download/v5.2.1/ppx_deriving-v5.2.1.tbz)
-> retrieved ppx_enumerate.v0.14.0 (cached)
-> retrieved ppx_expect.v0.14.2 (https://github.com/janestreet/ppx_expect/archive/v0.14.2.tar.gz)
-> retrieved ppx_fields_conv.v0.14.2 (https://github.com/janestreet/ppx_fields_conv/archive/v0.14.2.tar.gz)
-> retrieved ppx_fixed_literal.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_fixed_literal-v0.14.0.tar.gz)
-> retrieved ppx_hash.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_hash-v0.14.0.tar.gz)
-> retrieved ppx_here.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_here-v0.14.0.tar.gz)
-> retrieved ppx_inline_test.v0.14.1 (https://github.com/janestreet/ppx_inline_test/archive/v0.14.1.tar.gz)
-> retrieved ppx_jane.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_jane-v0.14.0.tar.gz)
-> retrieved ppx_js_style.v0.14.1 (cached)
-> retrieved ppx_let.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_let-v0.14.0.tar.gz)
-> retrieved ppx_module_timer.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_module_timer-v0.14.0.tar.gz)
-> installed ocamlify.0.0.1
-> retrieved ppx_optcomp.v0.14.3 (https://github.com/janestreet/ppx_optcomp/archive/v0.14.3.tar.gz)
-> retrieved ppx_optional.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_optional-v0.14.0.tar.gz)
-> retrieved ppx_pipebang.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_pipebang-v0.14.0.tar.gz)
-> retrieved ppx_sexp_conv.v0.14.3 (https://github.com/janestreet/ppx_sexp_conv/archive/v0.14.3.tar.gz)
-> retrieved ppx_sexp_message.v0.14.1 (https://github.com/janestreet/ppx_sexp_message/archive/v0.14.1.tar.gz)
-> retrieved ppx_sexp_value.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/ppx_sexp_value-v0.14.0.tar.gz)
-> retrieved ppx_stable.v0.14.1 (https://github.com/janestreet/ppx_stable/archive/v0.14.1.tar.gz)
-> retrieved ppx_string.v0.14.1 (https://github.com/janestreet/ppx_string/archive/v0.14.1.tar.gz)
-> retrieved ppx_typerep_conv.v0.14.2 (https://github.com/janestreet/ppx_typerep_conv/archive/v0.14.2.tar.gz)
-> retrieved ppx_variants_conv.v0.14.2 (https://github.com/janestreet/ppx_variants_conv/archive/v0.14.2.tar.gz)
-> retrieved ppxlib.0.25.1 (cached)
-> retrieved re.1.12.0 (cached)
-> retrieved result.1.5 (cached)
-> retrieved rresult.0.7.0 (cached)
-> installed result.1.5
-> retrieved sedlex.2.5 (https://github.com/ocaml-community/sedlex/archive/v2.5.tar.gz)
-> retrieved sexplib.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/sexplib-v0.14.0.tar.gz)
-> retrieved sexplib0.v0.14.0 (cached)
-> retrieved spawn.v0.17.0 (cached)
-> retrieved splittable_random.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/splittable_random-v0.14.0.tar.gz)
-> retrieved stdio.v0.14.0 (cached)
-> retrieved stringext.1.6.0 (cached)
-> retrieved time_now.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/time_now-v0.14.0.tar.gz)
-> installed spawn.v0.17.0
-> installed stringext.1.6.0
-> removed js_of_ocaml-ppx.5.8.2-floats
-> removed js_of_ocaml.5.8.2-floats
-> removed js_of_ocaml-compiler.5.8.2-floats
-> removed sedlex.3.3
-> removed ppxlib.0.33.0
-> removed sexplib0.v0.17.0
-> installed sexplib0.v0.14.0
-> installed re.1.12.0
-> retrieved timezone.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/timezone-v0.14.0.tar.gz)
-> retrieved topkg.1.0.7 (cached)
-> retrieved typerep.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/typerep-v0.14.0.tar.gz)
-> retrieved tyxml.4.6.0 (cached)
-> retrieved uchar.0.0.2 (cached)
-> retrieved uri.4.4.0 (cached)
-> retrieved uutf.1.0.3 (cached)
-> retrieved variantslib.v0.14.0 (https://ocaml.janestreet.com/ocaml-core/v0.14/files/variantslib-v0.14.0.tar.gz)
-> retrieved vg.0.9.5 (cached)
-> retrieved xmlm.1.4.0 (cached)
-> installed uchar.0.0.2
-> installed uri.4.4.0
-> installed topkg.1.0.7
-> installed rresult.0.7.0
-> installed base.v0.14.3
-> installed fmt.0.9.0
-> installed uutf.1.0.3
-> installed xmlm.1.4.0
-> installed fieldslib.v0.14.0
-> installed variantslib.v0.14.0
-> installed stdio.v0.14.0
-> installed typerep.v0.14.0
-> installed gg.1.0.0
-> installed otfm.0.4.0
-> installed parsexp.v0.14.2
-> installed sexplib.v0.14.0
-> installed vg.0.9.5
-> installed tyxml.4.6.0
-> installed ppxlib.0.25.1
-> installed ppx_optcomp.v0.14.3
-> installed ppx_cold.v0.14.0
-> installed ppx_here.v0.14.0
-> installed ppx_conv_func.v0.14.0
-> installed ppx_stable.v0.14.1
-> installed ppx_variants_conv.v0.14.2
-> installed ppx_fields_conv.v0.14.2
-> installed ppx_let.v0.14.0
-> installed ppx_compare.v0.14.0
-> installed ppx_enumerate.v0.14.0
-> installed ppx_typerep_conv.v0.14.2
-> installed ppx_fixed_literal.v0.14.0
-> installed ppx_pipebang.v0.14.0
-> installed ppx_optional.v0.14.0
-> installed ppx_js_style.v0.14.1
-> installed ppx_sexp_conv.v0.14.3
-> installed ppx_deriving.5.2.1
-> installed sedlex.2.5
-> installed ppx_hash.v0.14.0
-> installed ppx_assert.v0.14.0
-> installed ppx_sexp_value.v0.14.0
-> installed ppx_sexp_message.v0.14.1
-> installed ppx_custom_printf.v0.14.1
-> installed ppx_base.v0.14.0
-> installed jst-config.v0.14.1
-> installed ppx_string.v0.14.1
-> installed bin_prot.v0.14.1
-> installed time_now.v0.14.0
-> installed ppx_bin_prot.v0.14.0
-> installed ppx_module_timer.v0.14.0
-> installed ppx_inline_test.v0.14.1
-> installed ppx_bench.v0.14.1
-> installed ppx_expect.v0.14.2
-> installed splittable_random.v0.14.0
-> installed js_of_ocaml-compiler.5.8.2-floats
-> installed base_quickcheck.v0.14.1
-> installed ppx_jane.v0.14.0
-> installed base_bigstring.v0.14.0
-> installed js_of_ocaml.5.8.2-floats
-> installed js_of_ocaml-ppx.5.8.2-floats
-> installed core_kernel.v0.14.2
-> installed cfstream.1.3.2
-> installed timezone.v0.14.0
-> installed core.v0.14.1
-> installed ocamlnet.4.1.9-2
-> installed csvfields.v0.14.0
-> installed ppx_csv_conv.v0.14.0
-> installed biocaml.0.11.1
-> installed biotk.0.0.0
Done.
# To update the current shell environment, run: eval $(opam env)
2024-11-25 19:40.26 ---> saved as "dbd7a65b2e66d92a1689312269caa7d5cc85e2e13bd5f4c267c54e6ace5e2501"
/home/opam: (run (shell "opam option solver=builtin-0install"))
No modification in global configuration
2024-11-25 19:40.26 ---> saved as "6d29f08e6ea52afce7cbcc92f184092409f8a3b62d3beaba5b87733256cabe9b"
/home/opam: (run (network host)
(shell "(opam reinstall --with-test biotk.0.0.0) || true"))
The following actions will be performed:
=== recompile 1 package
- recompile biotk 0.0.0
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved biotk.0.0.0 (https://github.com/pveber/biotk/releases/download/v0.0.0/biotk-v0.0.0.tbz)
-> removed biotk.0.0.0
-> installed biotk.0.0.0
Done.
# To update the current shell environment, run: eval $(opam env)
2024-11-25 19:40.45 ---> saved as "2c13ac92c5a2b02bc04154ce0fd1325bf21aedebcd19f65479c95247a3fd734d"
/home/opam: (run (shell "opam reinstall --with-test --verbose biotk.0.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'biotk.0.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
The following actions will be performed:
=== recompile 1 package
- recompile biotk 0.0.0
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/4: [biotk.0.0.0: extract]
-> retrieved biotk.0.0.0 (cached)
Processing 2/4: [biotk: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "biotk" "-j" "39" "@install" "@runtest" (CWD=/home/opam/.opam/4.14/.opam-switch/build/biotk.0.0.0)
-> compiled biotk.0.0.0
-> removed biotk.0.0.0
-> installed biotk.0.0.0
Done.
# To update the current shell environment, run: eval $(opam env)
2024-11-25 19:41.03 ---> saved as "c160d2484990f9558b45f7bd19bfad246fd44a382bfd180bc6fa67d0a2ebe64b"
Job succeeded
2024-11-25 19:41.16: Job succeeded