- github
- ocaml
- opam-repository
- 387e2f
- compilers,4.14,ppxlib.0.38.0,revdeps,molenc.11.4.0
(not at the head of any monitored branch or PR)
2026-03-19 09:47.34: New job: test molenc.11.4.0 with ppxlib.0.38.0, using opam dev
from https://github.com/ocaml/opam-repository.git#refs/pull/29563/head (387e2f5b0d8ca5a51f4ba81536f829fd909dafd1)
on debian-13-ocaml-4.14/amd64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/29563/head" && git reset --hard 387e2f5b
git fetch origin master
git merge --no-edit 9f189ca4f94fbb5f0045820bf3c4ffafb21145ef
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn ppxlib.0.38.0 0.38.0
RUN opam reinstall ppxlib.0.38.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'ppxlib.0.38.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN opam reinstall molenc.11.4.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'molenc.11.4.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN (opam reinstall --with-test molenc.11.4.0) || true
RUN opam reinstall --with-test --verbose molenc.11.4.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'molenc.11.4.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2026-03-19 09:47.34: Using cache hint "ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e-ppxlib.0.38.0-molenc.11.4.0-387e2f5b0d8ca5a51f4ba81536f829fd909dafd1"
2026-03-19 09:47.34: Using OBuilder spec:
((from ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "opam option solver=builtin-0install && opam config report"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn ppxlib.0.38.0 0.38.0"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall ppxlib.0.38.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'ppxlib.0.38.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall molenc.11.4.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'molenc.11.4.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (network host)
(shell "(opam reinstall --with-test molenc.11.4.0) || true"))
(run (shell "opam reinstall --with-test --verbose molenc.11.4.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'molenc.11.4.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2026-03-19 09:47.34: Waiting for resource in pool OCluster
2026-03-19 10:42.33: Waiting for worker…
2026-03-19 10:44.34: Got resource from pool OCluster
Building on bremusa.ocamllabs.io
All commits already cached
HEAD is now at 9f189ca4f9 Merge pull request #29562 from shonfeder/release-dune-3.22.0
Updating 9f189ca4f9..387e2f5b0d
Fast-forward
packages/ppxlib-tools/ppxlib-tools.0.38.0/opam | 46 +++++++++++++++++++
packages/ppxlib/ppxlib.0.38.0/opam | 63 ++++++++++++++++++++++++++
2 files changed, 109 insertions(+)
create mode 100644 packages/ppxlib-tools/ppxlib-tools.0.38.0/opam
create mode 100644 packages/ppxlib/ppxlib.0.38.0/opam
(from ocaml/opam:debian-13-ocaml-4.14@sha256:37323dc71cac48a3e4688e16b45b95486f3cc440c55ab3f83114e8973362f41e)
2026-03-19 10:44.38 ---> using "32cd5b5baf995c02200cf270da597dbb25becd220af2c200c00b8b241a742195" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2026-03-19 10:44.38 ---> using "f3ed7bdbef828c9c0b079b10505c5f05c3c9adcca11ce5bf2dac2a4183e099d8" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
Continue? [Y/n] y
This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2026-03-19 10:44.38 ---> using "5bf6adb7b45bb7e0c215b8f509c71a8dae73a9a2060efcc27df9d4ef6c6d3350" from cache
/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version 2.5.0
# self-upgrade no
# system arch=x86_64 os=linux os-distribution=debian os-version=13
# solver builtin-0install
# install-criteria -changed,-count[avoid-version,solution]
# upgrade-criteria -count[avoid-version,solution]
# jobs 71
# repositories 1 (version-controlled)
# pinned 1 (version)
# current-switch 4.14
# invariant ["ocaml-base-compiler" {= "4.14.2"}]
# compiler-packages ocaml-base-compiler.4.14.2, ocaml-options-vanilla.1
# ocaml:native true
# ocaml:native-tools true
# ocaml:native-dynlink true
# ocaml:stubsdir /home/opam/.opam/4.14/lib/ocaml/stublibs:/home/opam/.opam/4.14/lib/ocaml
# ocaml:preinstalled false
# ocaml:compiler 4.14.2
2026-03-19 10:44.38 ---> using "0546f18fa5979677ee22eb9f2fcf19ab371564e845d317c2c70e41dd97dc22dd" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2026-03-19 10:44.38 ---> using "0a7188cbe95f4fe0ff26694977eb8794c975bdb534078da98a06d6c7373289b4" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2026-03-19 10:44.39 ---> using "fefa9924e0604c66f1b63db7279b36eedced1f983ba1c47733fb7cfa56139b72" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2026-03-19 10:44.39 ---> using "53e26a609c7de6302da009a0d221ee07df3c5dfa4227388d9c79a2518a55dcb0" from cache
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://deb.debian.org/debian trixie InRelease [140 kB]
- Get:2 http://deb.debian.org/debian trixie-updates InRelease [47.3 kB]
- Get:3 http://deb.debian.org/debian-security trixie-security InRelease [43.4 kB]
- Get:4 http://deb.debian.org/debian trixie/main amd64 Packages [9671 kB]
- Get:5 http://deb.debian.org/debian-security trixie-security/main amd64 Packages [115 kB]
- Fetched 10.0 MB in 1s (7045 kB/s)
- Reading package lists...
-
2026-03-19 10:44.39 ---> using "fdd8d751fb4b54449ac34bbfb1b82b1fc796cdd8e1f6b3aa49ab7fbeb661a77c" from cache
/home/opam: (run (shell "opam pin add -k version -yn ppxlib.0.38.0 0.38.0"))
ppxlib is now pinned to version 0.38.0
2026-03-19 10:44.39 ---> using "14ae3bf112473780bb63ba3353907a440e666f94e2c715c888c53852d2f55d09" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall ppxlib.0.38.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'ppxlib.0.38.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
ppxlib.0.38.0 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 6 packages
- install dune 3.22.0 [required by ppxlib]
- install ocaml-compiler-libs v0.12.4 [required by ppxlib]
- install ppx_derivers 1.2.1 [required by ppxlib]
- install ppxlib 0.38.0 (pinned)
- install sexplib0 v0.17.0 [required by ppxlib]
- install stdlib-shims 0.3.0 [required by ppxlib]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved dune.3.22.0 (cached)
-> retrieved ocaml-compiler-libs.v0.12.4 (cached)
-> retrieved ppx_derivers.1.2.1 (cached)
-> retrieved ppxlib.0.38.0 (cached)
-> retrieved sexplib0.v0.17.0 (cached)
-> retrieved stdlib-shims.0.3.0 (cached)
-> installed dune.3.22.0
-> installed ppx_derivers.1.2.1
-> installed stdlib-shims.0.3.0
-> installed sexplib0.v0.17.0
-> installed ocaml-compiler-libs.v0.12.4
-> installed ppxlib.0.38.0
Done.
# To update the current shell environment, run: eval $(opam env)
2026-03-19 10:44.39 ---> using "2a66371f05f597ba1fbaf6b705b1d6e7d3ee38447debc1bedb841c891c9b57b4" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall molenc.11.4.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'molenc.11.4.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
molenc.11.4.0 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== downgrade 1 package
- downgrade sexplib0 v0.17.0 to v0.16.0 [required by base]
=== recompile 1 package
- recompile ppxlib 0.38.0 (pinned) [uses sexplib0]
=== install 40 packages
- install base v0.16.4 [required by owl]
- install base-bytes base [required by dokeysto]
- install batteries 3.10.0 [required by molenc]
- install bst 7.1.0 [required by molenc]
- install camlp-streams 5.0.1 [required by batteries]
- install camltc 0.9.8 [required by dokeysto_camltc]
- install camlzip 1.14 [required by npy]
- install conf-autoconf 0.2 [required by cpu]
- install conf-bash 1 [required by camltc]
- install conf-graphviz 0.1 [required by molenc]
- install conf-openblas 0.2.3 [required by owl]
- install conf-pkg-config 4 [required by conf-zlib]
- install conf-python-3 9.0.0 [required by molenc]
- install conf-rdkit 1 [required by molenc]
- install conf-zlib 1 [required by camlzip]
- install cpm 12.2.0 [required by molenc]
- install cppo 1.8.0 [required by lwt]
- install cpu 2.0.0 [required by parany]
- install csexp 1.5.2 [required by dune-configurator]
- install ctypes 0.24.0 [required by owl]
- install dokeysto 4.0.2 [required by dokeysto_camltc]
- install dokeysto_camltc 4.0.2 [required by molenc]
- install dolog 4.0.0 [required by molenc]
- install dune-configurator 3.22.0 [required by owl]
- install extunix 0.4.4 [required by dokeysto]
- install integers 0.7.0 [required by ctypes]
- install logs 0.10.0 [required by camltc]
- install lwt 6.1.1 [required by camltc]
- install minicli 5.0.2 [required by molenc]
- install molenc 11.4.0
- install npy 0.0.9 [required by owl]
- install num 1.6 [required by batteries]
- install ocamlbuild 0.16.1 [required by logs]
- install ocamlfind 1.9.8 [required by batteries]
- install ocamlgraph 2.2.0 [required by molenc]
- install ocplib-endian 1.2 [required by lwt]
- install owl 1.2 [required by molenc]
- install owl-base 1.2 [required by owl]
- install parany 14.0.1 [required by molenc]
- install topkg 1.1.1 [required by logs]
The following system packages will first need to be installed:
autoconf graphviz liblapacke-dev libopenblas-dev librdkit-dev pkg-config python3 python3-rdkit zlib1g-dev
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "graphviz" "liblapacke-dev" "libopenblas-dev" "librdkit-dev" "pkg-config" "python3" "python3-rdkit" "zlib1g-dev"
- Preconfiguring packages ...
- Selecting previously unselected package libpython3.13-minimal:amd64.
- (Reading database ...
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(Reading database ... 20623 files and directories currently installed.)
- Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ...
- Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ...
- Selecting previously unselected package python3.13-minimal.
- Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ...
- Unpacking python3.13-minimal (3.13.5-2) ...
- Setting up libpython3.13-minimal:amd64 (3.13.5-2) ...
- Setting up python3.13-minimal (3.13.5-2) ...
- Selecting previously unselected package python3-minimal.
- (Reading database ...
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(Reading database ... 20948 files and directories currently installed.)
- Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ...
- Unpacking python3-minimal (3.13.5-1) ...
- Selecting previously unselected package media-types.
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- Unpacking media-types (13.0.0) ...
- Selecting previously unselected package readline-common.
- Preparing to unpack .../2-readline-common_8.2-6_all.deb ...
- Unpacking readline-common (8.2-6) ...
- Selecting previously unselected package libreadline8t64:amd64.
- Preparing to unpack .../3-libreadline8t64_8.2-6_amd64.deb ...
- Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
- Unpacking libreadline8t64:amd64 (8.2-6) ...
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- Preparing to unpack .../104-python3-rdkit_202503.1-4_amd64.deb ...
- Unpacking python3-rdkit (202503.1-4) ...
- Selecting previously unselected package shared-mime-info.
- Preparing to unpack .../105-shared-mime-info_2.4-5+b2_amd64.deb ...
- Unpacking shared-mime-info (2.4-5+b2) ...
- Selecting previously unselected package xdg-user-dirs.
- Preparing to unpack .../106-xdg-user-dirs_0.18-2_amd64.deb ...
- Unpacking xdg-user-dirs (0.18-2) ...
- Selecting previously unselected package zlib1g-dev:amd64.
- Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ...
- Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
- Setting up media-types (13.0.0) ...
- Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ...
- Setting up libboost-python1.83.0 (1.83.0-4.2) ...
- Setting up libpixman-1-0:amd64 (0.44.0-3) ...
- Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
- Setting up libaom3:amd64 (3.12.1-1) ...
- Setting up liblerc4:amd64 (4.0.0+ds-5) ...
- Setting up libxpm4:amd64 (1:3.5.17-1+b3) ...
- Setting up libxrender1:amd64 (1:0.9.12-1) ...
- Setting up libdatrie1:amd64 (0.2.13-3+b1) ...
- Setting up xdg-user-dirs (0.18-2) ...
- Setting up libxcb-render0:amd64 (1.17.0-2+b1) ...
- Setting up liblab-gamut1:amd64 (2.42.4-3) ...
- Setting up x11-common (1:7.7+24+deb13u1) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of start.
- Setting up libdeflate0:amd64 (1.23-2) ...
- Setting up fonts-freefont-ttf (20211204+svn4273-2) ...
- Setting up m4 (1.4.19-8) ...
- Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ...
- Setting up rdkit-data (202503.1-4) ...
- Setting up libabsl20240722:amd64 (20240722.0-4) ...
- Setting up libjbig0:amd64 (2.1-6.1+b2) ...
- Setting up libboost-serialization1.83.0:amd64 (1.83.0-4.2) ...
- Setting up libboost-numpy1.83.0 (1.83.0-4.2) ...
- Setting up autotools-dev (20240727.1) ...
- Setting up libglib2.0-0t64:amd64 (2.84.4-3~deb13u2) ...
- No schema files found: doing nothing.
- Setting up libblas3:amd64 (3.12.1-6) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libglib2.0-data (2.84.4-3~deb13u2) ...
- Setting up libpkgconf3:amd64 (1.8.1-4) ...
- Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ...
- Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ...
- Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.2) ...
- Setting up libpathplan4:amd64 (2.42.4-3) ...
- Setting up libann0 (1.1.2+doc-9+b1) ...
- Setting up libfribidi0:amd64 (1.0.16-1) ...
- Setting up libimagequant0:amd64 (2.18.0-1+b2) ...
- Setting up fonts-dejavu-mono (2.37-8) ...
- Setting up libpng16-16t64:amd64 (1.6.48-1+deb13u3) ...
- Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ...
- Setting up fonts-dejavu-core (2.37-8) ...
- Setting up libgav1-1:amd64 (0.19.0-3+b1) ...
- Setting up pkgconf-bin (1.8.1-4) ...
- Setting up libltdl7:amd64 (2.5.4-4) ...
- Setting up libgfortran5:amd64 (14.2.0-19) ...
- Setting up autoconf (2.72-3.1) ...
- Setting up libwebp7:amd64 (1.5.0-0.1) ...
- Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
- Setting up libnuma1:amd64 (2.0.19-1) ...
- Setting up libdav1d7:amd64 (1.5.1-1) ...
- Setting up libtiff6:amd64 (4.7.0-3+deb13u1) ...
- Setting up librav1e0.7:amd64 (0.7.1-9+b2) ...
- Setting up fonts-liberation (1:2.1.5-3) ...
- Setting up libthai-data (0.1.29-2) ...
- Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2+b1) ...
- Setting up libcdt5:amd64 (2.42.4-3) ...
- Setting up libcgraph6:amd64 (2.42.4-3) ...
- Setting up libcoordgen3:amd64 (3.0.2-1+b2) ...
- Setting up fonts-liberation-sans-narrow (1:1.07.6-4) ...
- Setting up libde265-0:amd64 (1.0.15-1+b3) ...
- Setting up libx265-215:amd64 (4.1-2) ...
- Setting up libinchi1.07 (1.07.3+dfsg-1) ...
- Setting up libyuv0:amd64 (0.0.1904.20250204-1) ...
- Setting up readline-common (8.2-6) ...
- Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1+deb13u2) ...
- Setting up libblas-dev:amd64 (3.12.1-6) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
- Setting up automake (1:1.17-4) ...
- update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
- Setting up libgts-bin (0.7.6+darcs121130-5.2+b1) ...
- Setting up libice6:amd64 (2:1.1.1-1) ...
- Setting up libavif16:amd64 (1.2.1-1.2) ...
- Setting up liblapack3:amd64 (3.12.1-6) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libopenblas0-pthread:amd64 (0.3.29+ds-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode
- Setting up fontconfig-config (2.15.0-2.3) ...
- Setting up pkgconf:amd64 (1.8.1-4) ...
- Setting up libmaeparser1:amd64 (1.3.1-1+b2) ...
- Setting up libthai0:amd64 (0.1.29-2+b1) ...
- Setting up libtmglib3:amd64 (3.12.1-6) ...
- Setting up libfreetype6:amd64 (2.13.3+dfsg-1+deb13u1) ...
- Setting up shared-mime-info (2.4-5+b2) ...
- Setting up liblapack-dev:amd64 (3.12.1-6) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- Setting up pkg-config:amd64 (1.8.1-4) ...
- Setting up libreadline8t64:amd64 (8.2-6) ...
- Setting up libgvpr2:amd64 (2.42.4-3) ...
- Setting up libopenblas0:amd64 (0.3.29+ds-3) ...
- Setting up liblapacke:amd64 (3.12.1-6) ...
- Setting up libharfbuzz0b:amd64 (10.2.0-1+b1) ...
- Setting up libtmglib-dev:amd64 (3.12.1-6) ...
- Setting up libfontconfig1:amd64 (2.15.0-2.3) ...
- Setting up libsm6:amd64 (2:1.2.6-1) ...
- Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ...
- Setting up libpython3-stdlib:amd64 (3.13.5-1) ...
- Setting up libopenblas-pthread-dev:amd64 (0.3.29+ds-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode
- Setting up fontconfig (2.15.0-2.3) ...
- Regenerating fonts cache...
- done.
- Setting up python3.13 (3.13.5-2) ...
- Setting up libpango-1.0-0:amd64 (1.56.3-1) ...
- Setting up python3 (3.13.5-1) ...
- running python rtupdate hooks for python3.13...
- running python post-rtupdate hooks for python3.13...
- Setting up liblapacke-dev:amd64 (3.12.1-6) ...
- Setting up libcairo2:amd64 (1.18.4-1+b1) ...
- Setting up libopenblas-dev:amd64 (0.3.29+ds-3) ...
- Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ...
- Setting up python3-numpy (1:2.2.4+ds-1) ...
- Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ...
- Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ...
- Setting up libxmu6:amd64 (2:1.1.3-3+b4) ...
- Setting up librdkit1t64 (202503.1-4) ...
- Setting up libxaw7:amd64 (2:1.0.16-1) ...
- Setting up python3-rdkit (202503.1-4) ...
- Setting up librdkit-dev (202503.1-4) ...
- Setting up libheif-plugin-libde265:amd64 (1.19.8-1) ...
- Setting up libheif1:amd64 (1.19.8-1) ...
- Setting up libgd3:amd64 (2.3.3-13) ...
- Setting up libgvc6 (2.42.4-3) ...
- Setting up libheif-plugin-dav1d:amd64 (1.19.8-1) ...
- Setting up graphviz (2.42.4-3) ...
- Setting up libheif-plugin-x265:amd64 (1.19.8-1) ...
- Setting up libheif-plugin-aomenc:amd64 (1.19.8-1) ...
- Processing triggers for libc-bin (2.41-12+deb13u1) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved base.v0.16.4 (cached)
-> retrieved batteries.3.10.0 (cached)
-> retrieved bst.7.1.0 (cached)
-> retrieved camlp-streams.5.0.1 (cached)
-> retrieved camltc.0.9.8 (cached)
-> retrieved camlzip.1.14 (cached)
-> retrieved conf-openblas.0.2.3 (cached)
-> retrieved conf-python-3.9.0.0 (cached)
-> retrieved conf-rdkit.1 (cached)
-> retrieved cpm.12.2.0 (cached)
-> retrieved cppo.1.8.0 (cached)
-> retrieved cpu.2.0.0 (cached)
-> installed conf-autoconf.0.2
-> installed conf-bash.1
-> installed conf-pkg-config.4
-> installed conf-graphviz.0.1
-> installed conf-python-3.9.0.0
-> retrieved csexp.1.5.2 (cached)
-> retrieved ctypes.0.24.0 (cached)
-> installed camlp-streams.5.0.1
-> installed conf-zlib.1
-> retrieved dokeysto.4.0.2, dokeysto_camltc.4.0.2 (cached)
-> retrieved dolog.4.0.0 (cached)
-> installed conf-rdkit.1
-> installed conf-openblas.0.2.3
-> installed csexp.1.5.2
-> installed dolog.4.0.0
-> installed cppo.1.8.0
-> retrieved dune-configurator.3.22.0 (cached)
-> retrieved extunix.0.4.4 (cached)
-> retrieved integers.0.7.0 (cached)
-> retrieved logs.0.10.0 (cached)
-> retrieved lwt.6.1.1 (cached)
-> retrieved minicli.5.0.2 (cached)
-> installed cpu.2.0.0
-> retrieved molenc.11.4.0 (https://opam.ocaml.org/cache)
-> retrieved npy.0.0.9 (cached)
-> retrieved num.1.6 (cached)
-> retrieved ocamlbuild.0.16.1 (cached)
-> installed minicli.5.0.2
-> retrieved ocamlfind.1.9.8 (cached)
-> retrieved ocamlgraph.2.2.0 (cached)
-> installed integers.0.7.0
-> retrieved ocplib-endian.1.2 (cached)
-> installed dune-configurator.3.22.0
-> installed num.1.6
-> installed ocamlgraph.2.2.0
-> retrieved owl.1.2, owl-base.1.2 (cached)
-> installed ocamlfind.1.9.8
-> installed base-bytes.base
-> installed ocamlbuild.0.16.1
-> retrieved parany.14.0.1 (cached)
-> installed ctypes.0.24.0
-> retrieved ppxlib.0.38.0 (cached)
-> retrieved sexplib0.v0.16.0 (cached)
-> retrieved topkg.1.1.1 (cached)
-> installed parany.14.0.1
-> installed ocplib-endian.1.2
-> installed camlzip.1.14
-> removed ppxlib.0.38.0
-> removed sexplib0.v0.17.0
-> installed sexplib0.v0.16.0
-> installed npy.0.0.9
-> installed lwt.6.1.1
-> installed batteries.3.10.0
-> installed owl-base.1.2
-> installed topkg.1.1.1
-> installed bst.7.1.0
-> installed cpm.12.2.0
-> installed logs.0.10.0
-> installed base.v0.16.4
-> installed camltc.0.9.8
-> installed ppxlib.0.38.0
-> installed extunix.0.4.4
-> installed dokeysto.4.0.2
-> installed dokeysto_camltc.4.0.2
-> installed owl.1.2
-> installed molenc.11.4.0
Done.
# To update the current shell environment, run: eval $(opam env)
2026-03-19 10:48.30 ---> saved as "3b7718211d4dbe209f78cdac1e186cd67d2b867c095c28d6d883c08ea8438d18"
/home/opam: (run (network host)
(shell "(opam reinstall --with-test molenc.11.4.0) || true"))
The following actions will be performed:
=== recompile 1 package
- recompile molenc 11.4.0
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved molenc.11.4.0 (https://opam.ocaml.org/cache)
-> removed molenc.11.4.0
-> installed molenc.11.4.0
Done.
# To update the current shell environment, run: eval $(opam env)
2026-03-19 10:48.43 ---> saved as "079c5e2ef6775f2120719686fbd22a629532291d9b7a6a3ff1b02c001ed97d25"
/home/opam: (run (shell "opam reinstall --with-test --verbose molenc.11.4.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'molenc.11.4.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
The following actions will be performed:
=== recompile 1 package
- recompile molenc 11.4.0
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/4: [molenc.11.4.0: extract]
-> retrieved molenc.11.4.0 (cached)
Processing 2/4: [molenc: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "molenc" "-j" "71" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
-> compiled molenc.11.4.0
-> removed molenc.11.4.0
Processing 4/4: [molenc: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc.sh" "/home/opam/.opam/4.14/bin/molenc.sh" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_common.py" "/home/opam/.opam/4.14/bin/molenc_common.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_lizard.py" "/home/opam/.opam/4.14/bin/molenc_lizard.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.py" "/home/opam/.opam/4.14/bin/molenc_scan.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_type_atoms.py" "/home/opam/.opam/4.14/bin/molenc_type_atoms.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/smi2png.py" "/home/opam/.opam/4.14/bin/molenc_smi2png.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
-> installed molenc.11.4.0
Done.
# To update the current shell environment, run: eval $(opam env)
2026-03-19 10:48.54 ---> saved as "fc2a2aa5e21ea771236c4ff2f81c337306cfac4ee013b326317f30fbdfb9acfc"
Job succeeded
2026-03-19 10:49.05: Job succeeded