(for PR #21050)
2022-04-07 16:32.18: New job: test molenc.8.0.2 with conf-python-3.9.0.0, using opam 2.1
from https://github.com/ocaml/opam-repository.git#refs/pull/21050/head (408cb884f1855ff33d5c4b904ad54843ed97f9c6)
on debian-11-ocaml-4.14/amd64
To reproduce locally:
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/21050/head" && git reset --hard 408cb884
git fetch origin master
git merge c66b6a131c3f85d4bb738e6005eb60bb24383030
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-11-ocaml-4.14@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f
USER 1000:1000
WORKDIR /home/opam
RUN for pkg in $(opam pin list --short); do opam pin remove "$pkg"; done
RUN opam repository remove -a multicore || true
RUN sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam
RUN opam init --reinit -ni
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMSOLVERTIMEOUT="500"
ENV OPAMPRECISETRACKING="1"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam pin add -k version -yn conf-python-3.9.0.0 9.0.0
RUN opam update --depexts
RUN opam remove conf-python-3.9.0.0 && opam install --deps-only conf-python-3.9.0.0 && opam install -v conf-python-3.9.0.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-11\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
done; \
exit 1
RUN opam update --depexts
RUN opam remove molenc.8.0.2 && opam install --deps-only molenc.8.0.2 && opam install -v molenc.8.0.2; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-11\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
done; \
exit 1
RUN opam update --depexts
RUN opam remove molenc.8.0.2 && opam install --deps-only --with-test molenc.8.0.2 && opam install -v --with-test molenc.8.0.2; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-11\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
done; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2022-04-07 16:32.18: Using cache hint "ocaml/opam:debian-11-ocaml-4.14@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f-conf-python-3.9.0.0-molenc.8.0.2-408cb884f1855ff33d5c4b904ad54843ed97f9c6"
2022-04-07 16:32.18: Using OBuilder spec:
((from ocaml/opam:debian-11-ocaml-4.14@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "for pkg in $(opam pin list --short); do opam pin remove \"$pkg\"; done"))
(run (shell "opam repository remove -a multicore || true"))
(run (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam"))
(run (shell "opam init --reinit --config .opamrc-sandbox -ni"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMSOLVERTIMEOUT 500)
(env OPAMPRECISETRACKING 1)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (shell "opam pin add -k version -yn conf-python-3.9.0.0 9.0.0"))
(run (network host)
(shell "opam update --depexts"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam remove conf-python-3.9.0.0 && opam install --deps-only conf-python-3.9.0.0 && opam install -v conf-python-3.9.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n done;\
\n exit 1"))
(run (network host)
(shell "opam update --depexts"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam remove molenc.8.0.2 && opam install --deps-only molenc.8.0.2 && opam install -v molenc.8.0.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n done;\
\n exit 1"))
(run (network host)
(shell "opam update --depexts"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam remove molenc.8.0.2 && opam install --deps-only --with-test molenc.8.0.2 && opam install -v --with-test molenc.8.0.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n done;\
\n exit 1"))
)
2022-04-07 16:32.18: Waiting for resource in pool OCluster
2022-04-07 16:39.49: Waiting for worker...
2022-04-07 16:42.44: Got resource from pool OCluster
Building on pima.ocamllabs.io
All commits already cached
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HEAD is now at c66b6a131c Merge pull request #21135 from kit-ty-kate/jst-v15-unlock
Merge made by the 'recursive' strategy.
.../conf-python-3.9.0.0/files/test.py | 1 +
packages/conf-python-3/conf-python-3.9.0.0/opam | 33 ++++++++++++++++++++++
2 files changed, 34 insertions(+)
create mode 100644 packages/conf-python-3/conf-python-3.9.0.0/files/test.py
create mode 100644 packages/conf-python-3/conf-python-3.9.0.0/opam
(from ocaml/opam:debian-11-ocaml-4.14@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f)
Unable to find image 'ocaml/opam:debian-11-ocaml-4.14@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f' locally
docker.io/ocaml/opam@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f: Pulling from ocaml/opam
dbba69284b27: Already exists
d5625030247c: Already exists
f45a8a06e9f1: Pulling fs layer
f45a8a06e9f1: Verifying Checksum
f45a8a06e9f1: Download complete
f45a8a06e9f1: Pull complete
Digest: sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f
Status: Downloaded newer image for ocaml/opam@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f
2022-04-07 16:48.25 ---> using "f5c2edee3210c7026d8f9c4d405fd408152fa5c0e3cae41cd0e1e93630dfb3ce" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "for pkg in $(opam pin list --short); do opam pin remove \"$pkg\"; done"))
Ok, ocaml-base-compiler is no longer pinned to https://github.com/ocaml/ocaml/archive/4.14.0.tar.gz (version 4.14.0)
Already up-to-date.
Nothing to do.
# Run eval $(opam env) to update the current shell environment
2022-04-07 16:48.25 ---> using "c319625cdb3b99390fd54482edceace8bde8899671ef81c92c1503963072dd08" from cache
/home/opam: (run (shell "opam repository remove -a multicore || true"))
[WARNING] No configured repositories by these names found: multicore
2022-04-07 16:48.25 ---> using "b9b7cc593f8fcb58626ea48eb27f64ab34f73f3259ca2d7d7d75b3b7c31ecfa0" from cache
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam"))
2022-04-07 16:48.25 ---> using "ecf7903648823f2dda51b8d12a71a91ae08a0a1094dbef1b808300620c69ee0f" from cache
/home/opam: (run (shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This development version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.1, which can't be reverted.
You may want to back it up before going further.
Continue? [Y/n] y
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] synchronised from file:///home/opam/opam-repository
2022-04-07 16:48.25 ---> using "87462000ba3b5e431e2362fe3cd788e13e44da3a0c9fec8af9d5e5ab33d11e8d" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMSOLVERTIMEOUT 500)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (run (shell "rm -rf opam-repository/"))
2022-04-07 16:48.25 ---> using "4c5cef59babee8fcbad5e4aba1a5deedb36f3f9dfbecd083ad8e2c2e2842e5d2" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2022-04-07 16:48.27 ---> using "547693c843d2b7da08471cc8ec6177c2001db73b88d5ca1d593eaf9686088809" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2022-04-07 16:48.27 ---> using "c3c2700725c46f295d646bfd43bf3c5b4228b7295cfbd849b7ad267bb1ac9531" from cache
/home/opam: (run (shell "opam pin add -k version -yn conf-python-3.9.0.0 9.0.0"))
conf-python-3 is now pinned to version 9.0.0
2022-04-07 16:48.27 ---> using "edb7a5b4e9049970d1205e51e8cd291c843fdc8c45e9cd115af9d1a100422534" from cache
/home/opam: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian bullseye InRelease
- Get:2 http://deb.debian.org/debian bullseye-updates InRelease [39.4 kB]
- Get:3 http://security.debian.org/debian-security bullseye-security InRelease [44.1 kB]
- Get:4 http://security.debian.org/debian-security bullseye-security/main amd64 Packages [124 kB]
- Fetched 207 kB in 1s (320 kB/s)
- Reading package lists...
-
2022-04-07 16:48.27 ---> using "0fa77c338d11c43312bc86182b4b5992ed123810397d600afcde2858eeda9e01" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam remove conf-python-3.9.0.0 && opam install --deps-only conf-python-3.9.0.0 && opam install -v conf-python-3.9.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n done;\
\n exit 1"))
Nothing to do.
[NOTE] conf-python-3.9.0.0 is not installed.
Nothing to do.
# Run eval $(opam env) to update the current shell environment
The following actions will be performed:
- install conf-python-3 9.0.0*
The following system packages will first need to be installed:
python3
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
Let opam run your package manager to install the required system packages?
(answer 'n' for other options) [Y/n] y
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "python3"
- debconf: delaying package configuration, since apt-utils is not installed
- Selecting previously unselected package libpython3.9-minimal:amd64.
- (Reading database ...
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(Reading database ... 18283 files and directories currently installed.)
- Preparing to unpack .../libpython3.9-minimal_3.9.2-1_amd64.deb ...
- Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ...
- Selecting previously unselected package python3.9-minimal.
- Preparing to unpack .../python3.9-minimal_3.9.2-1_amd64.deb ...
- Unpacking python3.9-minimal (3.9.2-1) ...
- Setting up libpython3.9-minimal:amd64 (3.9.2-1) ...
- Setting up python3.9-minimal (3.9.2-1) ...
- Selecting previously unselected package python3-minimal.
- (Reading database ...
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(Reading database ... 18568 files and directories currently installed.)
- Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ...
- Unpacking python3-minimal (3.9.2-3) ...
- Selecting previously unselected package media-types.
- Preparing to unpack .../1-media-types_4.0.0_all.deb ...
- Unpacking media-types (4.0.0) ...
- Selecting previously unselected package libmpdec3:amd64.
- Preparing to unpack .../2-libmpdec3_2.5.1-1_amd64.deb ...
- Unpacking libmpdec3:amd64 (2.5.1-1) ...
- Selecting previously unselected package libpython3.9-stdlib:amd64.
- Preparing to unpack .../3-libpython3.9-stdlib_3.9.2-1_amd64.deb ...
- Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ...
- Selecting previously unselected package python3.9.
- Preparing to unpack .../4-python3.9_3.9.2-1_amd64.deb ...
- Unpacking python3.9 (3.9.2-1) ...
- Selecting previously unselected package libpython3-stdlib:amd64.
- Preparing to unpack .../5-libpython3-stdlib_3.9.2-3_amd64.deb ...
- Unpacking libpython3-stdlib:amd64 (3.9.2-3) ...
- Setting up python3-minimal (3.9.2-3) ...
- Selecting previously unselected package python3.
- (Reading database ...
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(Reading database ... 18965 files and directories currently installed.)
- Preparing to unpack .../python3_3.9.2-3_amd64.deb ...
- Unpacking python3 (3.9.2-3) ...
- Setting up media-types (4.0.0) ...
- Setting up libmpdec3:amd64 (2.5.1-1) ...
- Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ...
- Setting up libpython3-stdlib:amd64 (3.9.2-3) ...
- Setting up python3.9 (3.9.2-1) ...
- Setting up python3 (3.9.2-3) ...
- running python rtupdate hooks for python3.9...
- running python post-rtupdate hooks for python3.9...
- Processing triggers for libc-bin (2.31-13+deb11u3) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 2/3: [conf-python-3: python3 test.py]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "python3" "test.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/conf-python-3.9.0.0)
- python-3 OK
-> compiled conf-python-3.9.0.0
-> installed conf-python-3.9.0.0
Done.
# Run eval $(opam env) to update the current shell environment
2022-04-07 16:49.02 ---> saved as "ebb83a9a2f98ce870951b06987525f4bb5fd7feff51d419db17c7d7d0e99cc58"
/home/opam: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian bullseye InRelease
- Hit:2 http://deb.debian.org/debian bullseye-updates InRelease
- Hit:3 http://security.debian.org/debian-security bullseye-security InRelease
- Reading package lists...
-
2022-04-07 16:49.09 ---> saved as "758a3814c7574fdc9c2e7bddbf12c5fc88a804632145f32cef3a56875d850709"
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam remove molenc.8.0.2 && opam install --deps-only molenc.8.0.2 && opam install -v molenc.8.0.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n done;\
\n exit 1"))
Nothing to do.
[NOTE] molenc.8.0.2 is not installed.
The following actions will be performed:
- install dune 2.9.3
- install conf-rdkit 1
- install conf-which 1
- install ocamlfind 1.9.3
- install ocamlbuild 0.14.1
- install stdlib-shims 0.3.0
- install sexplib0 v0.15.0
- install result 1.5
- install ppx_derivers 1.2.1
- install ocaml-compiler-libs v0.12.4
- install minicli 5.0.2
- install dolog 4.0.0
- install csexp 1.5.1
- install conf-autoconf 0.1
- install num 1.4
- install base-bytes base
- install ppxlib 0.26.0
- install dune-configurator 2.9.3
- install cpu 2.0.0
- install batteries 3.5.1
- install extunix 0.4.0
- install parany 10.0.2
- install cpm 12.0.0
- install bst 7.0.0
- install dokeysto 4.0.0
===== 25 to install =====
The following system packages will first need to be installed:
autoconf librdkit-dev python3-rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
Let opam run your package manager to install the required system packages?
(answer 'n' for other options) [Y/n] y
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "librdkit-dev" "python3-rdkit"
- debconf: delaying package configuration, since apt-utils is not installed
- Selecting previously unselected package libsigsegv2:amd64.
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(Reading database ... 18985 files and directories currently installed.)
- Preparing to unpack .../00-libsigsegv2_2.13-1_amd64.deb ...
- Unpacking libsigsegv2:amd64 (2.13-1) ...
- Selecting previously unselected package m4.
- Preparing to unpack .../01-m4_1.4.18-5_amd64.deb ...
- Unpacking m4 (1.4.18-5) ...
- Selecting previously unselected package autoconf.
- Preparing to unpack .../02-autoconf_2.69-14_all.deb ...
- Unpacking autoconf (2.69-14) ...
- Selecting previously unselected package autotools-dev.
- Preparing to unpack .../03-autotools-dev_20180224.1+nmu1_all.deb ...
- Unpacking autotools-dev (20180224.1+nmu1) ...
- Selecting previously unselected package automake.
- Preparing to unpack .../04-automake_1%3a1.16.3-2_all.deb ...
- Unpacking automake (1:1.16.3-2) ...
- Selecting previously unselected package fonts-freefont-ttf.
- Preparing to unpack .../05-fonts-freefont-ttf_20120503-10_all.deb ...
- Unpacking fonts-freefont-ttf (20120503-10) ...
- Selecting previously unselected package libblas3:amd64.
- Preparing to unpack .../06-libblas3_3.9.0-3_amd64.deb ...
- Unpacking libblas3:amd64 (3.9.0-3) ...
- Selecting previously unselected package libboost-iostreams1.74.0:amd64.
- Preparing to unpack .../07-libboost-iostreams1.74.0_1.74.0-9_amd64.deb ...
- Unpacking libboost-iostreams1.74.0:amd64 (1.74.0-9) ...
- Selecting previously unselected package libboost-python1.74.0.
- Preparing to unpack .../08-libboost-python1.74.0_1.74.0-9_amd64.deb ...
- Unpacking libboost-python1.74.0 (1.74.0-9) ...
- Selecting previously unselected package libboost-serialization1.74.0:amd64.
- Preparing to unpack .../09-libboost-serialization1.74.0_1.74.0-9_amd64.deb ...
- Unpacking libboost-serialization1.74.0:amd64 (1.74.0-9) ...
- Selecting previously unselected package libcoordgen1:amd64.
- Preparing to unpack .../10-libcoordgen1_1.4.2-1_amd64.deb ...
- Unpacking libcoordgen1:amd64 (1.4.2-1) ...
- Selecting previously unselected package libgfortran5:amd64.
- Preparing to unpack .../11-libgfortran5_10.2.1-6_amd64.deb ...
- Unpacking libgfortran5:amd64 (10.2.1-6) ...
- Selecting previously unselected package liblapack3:amd64.
- Preparing to unpack .../12-liblapack3_3.9.0-3_amd64.deb ...
- Unpacking liblapack3:amd64 (3.9.0-3) ...
- Selecting previously unselected package libmaeparser1:amd64.
- Preparing to unpack .../13-libmaeparser1_1.2.4-1+b1_amd64.deb ...
- Unpacking libmaeparser1:amd64 (1.2.4-1+b1) ...
- Selecting previously unselected package libpython3.9:amd64.
- Preparing to unpack .../14-libpython3.9_3.9.2-1_amd64.deb ...
- Unpacking libpython3.9:amd64 (3.9.2-1) ...
- Selecting previously unselected package librdkit1.
- Preparing to unpack .../15-librdkit1_202009.4-1_amd64.deb ...
- Unpacking librdkit1 (202009.4-1) ...
- Selecting previously unselected package librdkit-dev.
- Preparing to unpack .../16-librdkit-dev_202009.4-1_amd64.deb ...
- Unpacking librdkit-dev (202009.4-1) ...
- Selecting previously unselected package python3-pkg-resources.
- Preparing to unpack .../17-python3-pkg-resources_52.0.0-4_all.deb ...
- Unpacking python3-pkg-resources (52.0.0-4) ...
- Selecting previously unselected package python3-numpy.
- Preparing to unpack .../18-python3-numpy_1%3a1.19.5-1_amd64.deb ...
- Unpacking python3-numpy (1:1.19.5-1) ...
- Selecting previously unselected package rdkit-data.
- Preparing to unpack .../19-rdkit-data_202009.4-1_all.deb ...
- Unpacking rdkit-data (202009.4-1) ...
- Selecting previously unselected package python3-rdkit.
- Preparing to unpack .../20-python3-rdkit_202009.4-1_amd64.deb ...
- Unpacking python3-rdkit (202009.4-1) ...
- Setting up python3-pkg-resources (52.0.0-4) ...
- Setting up libboost-iostreams1.74.0:amd64 (1.74.0-9) ...
- Setting up fonts-freefont-ttf (20120503-10) ...
- Setting up rdkit-data (202009.4-1) ...
- Setting up libmaeparser1:amd64 (1.2.4-1+b1) ...
- Setting up autotools-dev (20180224.1+nmu1) ...
- Setting up libblas3:amd64 (3.9.0-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libpython3.9:amd64 (3.9.2-1) ...
- Setting up libsigsegv2:amd64 (2.13-1) ...
- Setting up libgfortran5:amd64 (10.2.1-6) ...
- Setting up libboost-serialization1.74.0:amd64 (1.74.0-9) ...
- Setting up libcoordgen1:amd64 (1.4.2-1) ...
- Setting up libboost-python1.74.0 (1.74.0-9) ...
- Setting up liblapack3:amd64 (3.9.0-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up librdkit1 (202009.4-1) ...
- Setting up m4 (1.4.18-5) ...
- Setting up librdkit-dev (202009.4-1) ...
- Setting up python3-numpy (1:1.19.5-1) ...
- Setting up autoconf (2.69-14) ...
- Setting up automake (1:1.16.3-2) ...
- update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
- Setting up python3-rdkit (202009.4-1) ...
- Processing triggers for libc-bin (2.31-13+deb11u3) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved batteries.3.5.1 (cached)
-> retrieved bst.7.0.0 (cached)
-> retrieved cpm.12.0.0 (cached)
-> retrieved cpu.2.0.0 (cached)
-> installed conf-which.1
-> retrieved csexp.1.5.1 (cached)
-> retrieved dokeysto.4.0.0 (cached)
-> installed conf-autoconf.0.1
-> retrieved dolog.4.0.0 (cached)
-> installed conf-rdkit.1
-> retrieved dune.2.9.3 (cached)
-> retrieved dune-configurator.2.9.3 (cached)
-> retrieved extunix.0.4.0 (cached)
-> retrieved minicli.5.0.2 (cached)
-> retrieved num.1.4 (cached)
-> retrieved ocaml-compiler-libs.v0.12.4 (cached)
-> retrieved ocamlbuild.0.14.1 (cached)
-> retrieved ocamlfind.1.9.3 (cached)
-> retrieved parany.10.0.2 (cached)
-> retrieved ppx_derivers.1.2.1 (cached)
-> retrieved ppxlib.0.26.0 (cached)
-> retrieved result.1.5 (cached)
-> retrieved sexplib0.v0.15.0 (cached)
-> retrieved stdlib-shims.0.3.0 (cached)
-> installed ocamlfind.1.9.3
-> installed base-bytes.base
-> installed ocamlbuild.0.14.1
-> installed num.1.4
-> installed dune.2.9.3
-> installed dolog.4.0.0
-> installed minicli.5.0.2
-> installed csexp.1.5.1
-> installed stdlib-shims.0.3.0
-> installed ppx_derivers.1.2.1
-> installed result.1.5
-> installed sexplib0.v0.15.0
-> installed ocaml-compiler-libs.v0.12.4
-> installed cpu.2.0.0
-> installed dune-configurator.2.9.3
-> installed parany.10.0.2
-> installed ppxlib.0.26.0
-> installed batteries.3.5.1
-> installed cpm.12.0.0
-> installed bst.7.0.0
-> installed extunix.0.4.0
-> installed dokeysto.4.0.0
Done.
# Run eval $(opam env) to update the current shell environment
The following actions will be performed:
- install molenc 8.0.2
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/3:
-> retrieved molenc.8.0.2 (cached)
Processing 2/3: [molenc: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "molenc" "-j" "31" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.8.0.2)
-> compiled molenc.8.0.2
Processing 3/3: [molenc: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_common.py" "/home/opam/.opam/4.14/bin/molenc_common.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.8.0.2)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_type_atoms.py" "/home/opam/.opam/4.14/bin/molenc_type_atoms.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.8.0.2)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.py" "/home/opam/.opam/4.14/bin/molenc_scan.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.8.0.2)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc.sh" "/home/opam/.opam/4.14/bin/molenc.sh" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.8.0.2)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.sh" "/home/opam/.opam/4.14/bin/molenc_scan.sh" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.8.0.2)
-> installed molenc.8.0.2
Done.
# Run eval $(opam env) to update the current shell environment
2022-04-07 16:52.46 ---> saved as "679b394b6b0869caa606dfd8ab080709ddb3db2206e44ce71180be9392ebfaec"
/home/opam: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian bullseye InRelease
- Hit:2 http://security.debian.org/debian-security bullseye-security InRelease
- Hit:3 http://deb.debian.org/debian bullseye-updates InRelease
- Reading package lists...
-
2022-04-07 16:52.57 ---> saved as "41b650d939cfa6b2a23ae085e9fd9504dbd1e7f7a3ce4f2d8a56df6f6133d8a3"
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam remove molenc.8.0.2 && opam install --deps-only --with-test molenc.8.0.2 && opam install -v --with-test molenc.8.0.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n done;\
\n exit 1"))
The following actions will be performed:
- remove molenc 8.0.2
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> removed molenc.8.0.2
Done.
# Run eval $(opam env) to update the current shell environment
Nothing to do.
# Run eval $(opam env) to update the current shell environment
The following actions will be performed:
- install molenc 8.0.2
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/3:
-> retrieved molenc.8.0.2 (cached)
Processing 2/3: [molenc: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "molenc" "-j" "31" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.8.0.2)
-> compiled molenc.8.0.2
Processing 3/3: [molenc: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_common.py" "/home/opam/.opam/4.14/bin/molenc_common.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.8.0.2)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_type_atoms.py" "/home/opam/.opam/4.14/bin/molenc_type_atoms.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.8.0.2)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.py" "/home/opam/.opam/4.14/bin/molenc_scan.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.8.0.2)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc.sh" "/home/opam/.opam/4.14/bin/molenc.sh" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.8.0.2)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.sh" "/home/opam/.opam/4.14/bin/molenc_scan.sh" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.8.0.2)
-> installed molenc.8.0.2
Done.
# Run eval $(opam env) to update the current shell environment
2022-04-07 16:54.13 ---> saved as "38e8c05eadf60ddbcaf7a624dd904a168c1c66e460d14f5650603bc346f17fdf"
Job succeeded
2022-04-07 16:54.57: Job succeeded