(for PR #21050)

2022-04-07 16:32.18: New job: test svmwrap.4.0.0 with conf-python-3.9.0.0, using opam 2.1
                              from https://github.com/ocaml/opam-repository.git#refs/pull/21050/head (408cb884f1855ff33d5c4b904ad54843ed97f9c6)
                              on debian-11-ocaml-4.14/amd64

To reproduce locally:

git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/21050/head" && git reset --hard 408cb884
git fetch origin master
git merge c66b6a131c3f85d4bb738e6005eb60bb24383030
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-11-ocaml-4.14@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f
USER 1000:1000
WORKDIR /home/opam
RUN for pkg in $(opam pin list --short); do opam pin remove "$pkg"; done
RUN opam repository remove -a multicore || true
RUN sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam
RUN opam init --reinit -ni
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMSOLVERTIMEOUT="500"
ENV OPAMPRECISETRACKING="1"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam pin add -k version -yn conf-python-3.9.0.0 9.0.0
RUN opam update --depexts
RUN opam remove conf-python-3.9.0.0 && opam install --deps-only conf-python-3.9.0.0 && opam install -v conf-python-3.9.0.0; \
    res=$?; \
    test "$res" != 31 && exit "$res"; \
    export OPAMCLI=2.0; \
    build_dir=$(opam var prefix)/.opam-switch/build; \
    failed=$(ls "$build_dir"); \
    for pkg in $failed; do \
    if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-11\""; then \
    echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
    fi; \
    done; \
    exit 1
RUN opam update --depexts
RUN opam remove svmwrap.4.0.0 && opam install --deps-only svmwrap.4.0.0 && opam install -v svmwrap.4.0.0; \
    res=$?; \
    test "$res" != 31 && exit "$res"; \
    export OPAMCLI=2.0; \
    build_dir=$(opam var prefix)/.opam-switch/build; \
    failed=$(ls "$build_dir"); \
    for pkg in $failed; do \
    if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-11\""; then \
    echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
    fi; \
    done; \
    exit 1
RUN opam update --depexts
RUN opam remove svmwrap.4.0.0 && opam install --deps-only --with-test svmwrap.4.0.0 && opam install -v --with-test svmwrap.4.0.0; \
    res=$?; \
    test "$res" != 31 && exit "$res"; \
    export OPAMCLI=2.0; \
    build_dir=$(opam var prefix)/.opam-switch/build; \
    failed=$(ls "$build_dir"); \
    for pkg in $failed; do \
    if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-11\""; then \
    echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
    fi; \
    done; \
    exit 1

END-OF-DOCKERFILE
docker build -f ../Dockerfile .

2022-04-07 16:32.18: Using cache hint "ocaml/opam:debian-11-ocaml-4.14@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f-conf-python-3.9.0.0-svmwrap.4.0.0-408cb884f1855ff33d5c4b904ad54843ed97f9c6"
2022-04-07 16:32.18: Using OBuilder spec:
((from ocaml/opam:debian-11-ocaml-4.14@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f)
 (user (uid 1000) (gid 1000))
 (workdir /home/opam)
 (run (shell "for pkg in $(opam pin list --short); do opam pin remove \"$pkg\"; done"))
 (run (shell "opam repository remove -a multicore || true"))
 (run (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam"))
 (run (shell "opam init --reinit --config .opamrc-sandbox -ni"))
 (env OPAMDOWNLOADJOBS 1)
 (env OPAMERRLOGLEN 0)
 (env OPAMSOLVERTIMEOUT 500)
 (env OPAMPRECISETRACKING 1)
 (run (shell "rm -rf opam-repository/"))
 (copy (src .) (dst opam-repository/))
 (run (shell "opam repository set-url --strict default opam-repository/"))
 (run (shell "opam pin add -k version -yn conf-python-3.9.0.0 9.0.0"))
 (run (network host)
      (shell "opam update --depexts"))
 (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
      (network host)
      (shell  "opam remove conf-python-3.9.0.0 && opam install --deps-only conf-python-3.9.0.0 && opam install -v conf-python-3.9.0.0;\
             \n        res=$?;\
             \n        test \"$res\" != 31 && exit \"$res\";\
             \n        export OPAMCLI=2.0;\
             \n        build_dir=$(opam var prefix)/.opam-switch/build;\
             \n        failed=$(ls \"$build_dir\");\
             \n        for pkg in $failed; do\
             \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
             \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
             \n          fi;\
             \n        done;\
             \n        exit 1"))
 (run (network host)
      (shell "opam update --depexts"))
 (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
      (network host)
      (shell  "opam remove svmwrap.4.0.0 && opam install --deps-only svmwrap.4.0.0 && opam install -v svmwrap.4.0.0;\
             \n        res=$?;\
             \n        test \"$res\" != 31 && exit \"$res\";\
             \n        export OPAMCLI=2.0;\
             \n        build_dir=$(opam var prefix)/.opam-switch/build;\
             \n        failed=$(ls \"$build_dir\");\
             \n        for pkg in $failed; do\
             \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
             \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
             \n          fi;\
             \n        done;\
             \n        exit 1"))
 (run (network host)
      (shell "opam update --depexts"))
 (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
      (network host)
      (shell  "opam remove svmwrap.4.0.0 && opam install --deps-only --with-test svmwrap.4.0.0 && opam install -v --with-test svmwrap.4.0.0;\
             \n        res=$?;\
             \n        test \"$res\" != 31 && exit \"$res\";\
             \n        export OPAMCLI=2.0;\
             \n        build_dir=$(opam var prefix)/.opam-switch/build;\
             \n        failed=$(ls \"$build_dir\");\
             \n        for pkg in $failed; do\
             \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
             \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
             \n          fi;\
             \n        done;\
             \n        exit 1"))
)

2022-04-07 16:32.18: Waiting for resource in pool OCluster
2022-04-07 16:39.21: Waiting for worker...
2022-04-07 16:42.03: Got resource from pool OCluster
Building on marpe.ocamllabs.io
All commits already cached
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HEAD is now at c66b6a131c Merge pull request #21135 from kit-ty-kate/jst-v15-unlock
Merge made by the 'recursive' strategy.
 .../conf-python-3.9.0.0/files/test.py              |  1 +
 packages/conf-python-3/conf-python-3.9.0.0/opam    | 33 ++++++++++++++++++++++
 2 files changed, 34 insertions(+)
 create mode 100644 packages/conf-python-3/conf-python-3.9.0.0/files/test.py
 create mode 100644 packages/conf-python-3/conf-python-3.9.0.0/opam

(from ocaml/opam:debian-11-ocaml-4.14@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f)
Unable to find image 'ocaml/opam:debian-11-ocaml-4.14@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f' locally
docker.io/ocaml/opam@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f: Pulling from ocaml/opam
dbba69284b27: Already exists
d5625030247c: Already exists
f45a8a06e9f1: Pulling fs layer
f45a8a06e9f1: Verifying Checksum
f45a8a06e9f1: Download complete
f45a8a06e9f1: Pull complete
Digest: sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f
Status: Downloaded newer image for ocaml/opam@sha256:939c3a7774ef033240450a41691a21c40fbf2dd5efef200d8e31839e7ce55d2f
2022-04-07 16:53.18 ---> using "f5c2edee3210c7026d8f9c4d405fd408152fa5c0e3cae41cd0e1e93630dfb3ce" from cache

/: (user (uid 1000) (gid 1000))

/: (workdir /home/opam)

/home/opam: (run (shell "for pkg in $(opam pin list --short); do opam pin remove \"$pkg\"; done"))
Ok, ocaml-base-compiler is no longer pinned to https://github.com/ocaml/ocaml/archive/4.14.0.tar.gz (version 4.14.0)
Already up-to-date.
Nothing to do.
# Run eval $(opam env) to update the current shell environment
2022-04-07 16:53.18 ---> using "c319625cdb3b99390fd54482edceace8bde8899671ef81c92c1503963072dd08" from cache

/home/opam: (run (shell "opam repository remove -a multicore || true"))
[WARNING] No configured repositories by these names found: multicore
2022-04-07 16:53.18 ---> using "b9b7cc593f8fcb58626ea48eb27f64ab34f73f3259ca2d7d7d75b3b7c31ecfa0" from cache

/home/opam: (run (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam"))
2022-04-07 16:53.18 ---> using "ecf7903648823f2dda51b8d12a71a91ae08a0a1094dbef1b808300620c69ee0f" from cache

/home/opam: (run (shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
  - you won't be able to use mercurial repositories unless you install the hg command on your system.
  - you won't be able to use darcs repositories unless you install the darcs command on your system.

This development version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.1, which can't be reverted.
You may want to back it up before going further.

Continue? [Y/n] y
Format upgrade done.

<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] synchronised from file:///home/opam/opam-repository
2022-04-07 16:53.18 ---> using "87462000ba3b5e431e2362fe3cd788e13e44da3a0c9fec8af9d5e5ab33d11e8d" from cache

/home/opam: (env OPAMDOWNLOADJOBS 1)

/home/opam: (env OPAMERRLOGLEN 0)

/home/opam: (env OPAMSOLVERTIMEOUT 500)

/home/opam: (env OPAMPRECISETRACKING 1)

/home/opam: (run (shell "rm -rf opam-repository/"))
2022-04-07 16:53.18 ---> using "4c5cef59babee8fcbad5e4aba1a5deedb36f3f9dfbecd083ad8e2c2e2842e5d2" from cache

/home/opam: (copy (src .) (dst opam-repository/))
2022-04-07 16:53.37 ---> saved as "547693c843d2b7da08471cc8ec6177c2001db73b88d5ca1d593eaf9686088809"

/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2022-04-07 16:54.00 ---> saved as "c3c2700725c46f295d646bfd43bf3c5b4228b7295cfbd849b7ad267bb1ac9531"

/home/opam: (run (shell "opam pin add -k version -yn conf-python-3.9.0.0 9.0.0"))
conf-python-3 is now pinned to version 9.0.0
2022-04-07 16:54.01 ---> saved as "edb7a5b4e9049970d1205e51e8cd291c843fdc8c45e9cd115af9d1a100422534"

/home/opam: (run (network host)
                 (shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://security.debian.org/debian-security bullseye-security InRelease [44.1 kB]
- Hit:2 http://deb.debian.org/debian bullseye InRelease
- Get:3 http://deb.debian.org/debian bullseye-updates InRelease [39.4 kB]
- Get:4 http://security.debian.org/debian-security bullseye-security/main amd64 Packages [124 kB]
- Fetched 207 kB in 0s (493 kB/s)
- Reading package lists...
- 
2022-04-07 16:54.07 ---> saved as "0fa77c338d11c43312bc86182b4b5992ed123810397d600afcde2858eeda9e01"

/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
                 (network host)
                 (shell  "opam remove conf-python-3.9.0.0 && opam install --deps-only conf-python-3.9.0.0 && opam install -v conf-python-3.9.0.0;\
                        \n        res=$?;\
                        \n        test \"$res\" != 31 && exit \"$res\";\
                        \n        export OPAMCLI=2.0;\
                        \n        build_dir=$(opam var prefix)/.opam-switch/build;\
                        \n        failed=$(ls \"$build_dir\");\
                        \n        for pkg in $failed; do\
                        \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
                        \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
                        \n          fi;\
                        \n        done;\
                        \n        exit 1"))
[NOTE] conf-python-3.9.0.0 is not installed.

Nothing to do.
Nothing to do.
# Run eval $(opam env) to update the current shell environment
The following actions will be performed:
  - install conf-python-3 9.0.0*

The following system packages will first need to be installed:
    python3

<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
Let opam run your package manager to install the required system packages?
(answer 'n' for other options) [Y/n] y
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "python3"
- debconf: delaying package configuration, since apt-utils is not installed
- Selecting previously unselected package libpython3.9-minimal:amd64.
- (Reading database ... 
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(Reading database ... 18283 files and directories currently installed.)
- Preparing to unpack .../libpython3.9-minimal_3.9.2-1_amd64.deb ...
- Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ...
- Selecting previously unselected package python3.9-minimal.
- Preparing to unpack .../python3.9-minimal_3.9.2-1_amd64.deb ...
- Unpacking python3.9-minimal (3.9.2-1) ...
- Setting up libpython3.9-minimal:amd64 (3.9.2-1) ...
- Setting up python3.9-minimal (3.9.2-1) ...
- Selecting previously unselected package python3-minimal.
- (Reading database ... 
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(Reading database ... 18568 files and directories currently installed.)
- Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ...
- Unpacking python3-minimal (3.9.2-3) ...
- Selecting previously unselected package media-types.
- Preparing to unpack .../1-media-types_4.0.0_all.deb ...
- Unpacking media-types (4.0.0) ...
- Selecting previously unselected package libmpdec3:amd64.
- Preparing to unpack .../2-libmpdec3_2.5.1-1_amd64.deb ...
- Unpacking libmpdec3:amd64 (2.5.1-1) ...
- Selecting previously unselected package libpython3.9-stdlib:amd64.
- Preparing to unpack .../3-libpython3.9-stdlib_3.9.2-1_amd64.deb ...
- Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ...
- Selecting previously unselected package python3.9.
- Preparing to unpack .../4-python3.9_3.9.2-1_amd64.deb ...
- Unpacking python3.9 (3.9.2-1) ...
- Selecting previously unselected package libpython3-stdlib:amd64.
- Preparing to unpack .../5-libpython3-stdlib_3.9.2-3_amd64.deb ...
- Unpacking libpython3-stdlib:amd64 (3.9.2-3) ...
- Setting up python3-minimal (3.9.2-3) ...
- Selecting previously unselected package python3.
- (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 18965 files and directories currently installed.)
- Preparing to unpack .../python3_3.9.2-3_amd64.deb ...
- Unpacking python3 (3.9.2-3) ...
- Setting up media-types (4.0.0) ...
- Setting up libmpdec3:amd64 (2.5.1-1) ...
- Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ...
- Setting up libpython3-stdlib:amd64 (3.9.2-3) ...
- Setting up python3.9 (3.9.2-1) ...
- Setting up python3 (3.9.2-3) ...
- running python rtupdate hooks for python3.9...
- running python post-rtupdate hooks for python3.9...
- Processing triggers for libc-bin (2.31-13+deb11u3) ...

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing  2/3: [conf-python-3: python3 test.py]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "python3" "test.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/conf-python-3.9.0.0)
- python-3 OK
-> compiled  conf-python-3.9.0.0
-> installed conf-python-3.9.0.0
Done.
# Run eval $(opam env) to update the current shell environment
2022-04-07 16:54.34 ---> saved as "ebb83a9a2f98ce870951b06987525f4bb5fd7feff51d419db17c7d7d0e99cc58"

/home/opam: (run (network host)
                 (shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian bullseye InRelease
- Hit:2 http://deb.debian.org/debian bullseye-updates InRelease
- Hit:3 http://security.debian.org/debian-security bullseye-security InRelease
- Reading package lists...
2022-04-07 16:54.37 ---> saved as "758a3814c7574fdc9c2e7bddbf12c5fc88a804632145f32cef3a56875d850709"

/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
                 (network host)
                 (shell  "opam remove svmwrap.4.0.0 && opam install --deps-only svmwrap.4.0.0 && opam install -v svmwrap.4.0.0;\
                        \n        res=$?;\
                        \n        test \"$res\" != 31 && exit \"$res\";\
                        \n        export OPAMCLI=2.0;\
                        \n        build_dir=$(opam var prefix)/.opam-switch/build;\
                        \n        failed=$(ls \"$build_dir\");\
                        \n        for pkg in $failed; do\
                        \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
                        \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
                        \n          fi;\
                        \n        done;\
                        \n        exit 1"))
[NOTE] svmwrap.4.0.0 is not installed.

Nothing to do.
The following actions will be performed:
  - install seq                 base
  - install conf-rdkit          1
  - install ocamlbuild          0.14.1
  - install conf-pkg-config     2
  - install dune                2.9.3
  - install conf-which          1
  - install ocamlfind           1.9.3
  - install conf-libsvm-tools   1.0.0
  - install conf-nlopt          1
  - install stdlib-shims        0.3.0
  - install sexplib0            v0.15.0
  - install result              1.5
  - install ppx_derivers        1.2.1
  - install ocaml-compiler-libs v0.12.4
  - install minicli             5.0.2
  - install dolog               6.0.0
  - install csexp               1.5.1
  - install cppo                1.6.8
  - install bigarray-compat     1.1.0
  - install conf-graphviz       0.1
  - install conf-autoconf       0.1
  - install vector3             0.2.1
  - install topkg               1.0.5
  - install ocamlmod            0.0.9
  - install ocamlify            0.0.1
  - install num                 1.4
  - install base-bytes          base
  - install ocamlgraph          2.0.0
  - install stdcompat           18
  - install ppxlib              0.26.0
  - install dune-configurator   2.9.3
  - install mmap                1.2.0
  - install cpu                 2.0.0
  - install oasis               0.4.11
  - install batteries           3.5.1
  - install ocplib-endian       1.2
  - install pyml                20220325
  - install extunix             0.4.0
  - install parany              12.1.2
  - install nlopt-ocaml         0.5.1
  - install line_oriented       1.2.0
  - install cpm                 12.0.0
  - install bst                 7.0.0
  - install lwt                 5.5.0
  - install dokeysto            4.0.0
  - install logs                0.7.0
  - install camltc              0.9.8
  - install dokeysto_camltc     4.0.0
  - install molenc              16.5.0
===== 49 to install =====

The following system packages will first need to be installed:
    autoconf graphviz libnlopt-dev librdkit-dev libsvm-tools pkg-config python3-rdkit

<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
Let opam run your package manager to install the required system packages?
(answer 'n' for other options) [Y/n] y
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "graphviz" "libnlopt-dev" "librdkit-dev" "libsvm-tools" "pkg-config" "python3-rdkit"
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- Selecting previously unselected package librdkit-dev.
- Preparing to unpack .../181-librdkit-dev_202009.4-1_amd64.deb ...
- Unpacking librdkit-dev (202009.4-1) ...
- Selecting previously unselected package librsvg2-2:amd64.
- Preparing to unpack .../182-librsvg2-2_2.50.3+dfsg-1_amd64.deb ...
- Unpacking librsvg2-2:amd64 (2.50.3+dfsg-1) ...
- Selecting previously unselected package librsvg2-common:amd64.
- Preparing to unpack .../183-librsvg2-common_2.50.3+dfsg-1_amd64.deb ...
- Unpacking librsvg2-common:amd64 (2.50.3+dfsg-1) ...
- Selecting previously unselected package libsvm3:amd64.
- Preparing to unpack .../184-libsvm3_3.24+ds-6_amd64.deb ...
- Unpacking libsvm3:amd64 (3.24+ds-6) ...
- Selecting previously unselected package libsvm-tools.
- Preparing to unpack .../185-libsvm-tools_3.24+ds-6_amd64.deb ...
- Unpacking libsvm-tools (3.24+ds-6) ...
- Selecting previously unselected package libwacom-bin.
- Preparing to unpack .../186-libwacom-bin_1.8-2_amd64.deb ...
- Unpacking libwacom-bin (1.8-2) ...
- Selecting previously unselected package mesa-vulkan-drivers:amd64.
- Preparing to unpack .../187-mesa-vulkan-drivers_20.3.5-1_amd64.deb ...
- Unpacking mesa-vulkan-drivers:amd64 (20.3.5-1) ...
- Selecting previously unselected package notification-daemon.
- Preparing to unpack .../188-notification-daemon_3.20.0-4_amd64.deb ...
- Unpacking notification-daemon (3.20.0-4) ...
- Selecting previously unselected package pkg-config.
- Preparing to unpack .../189-pkg-config_0.29.2-1_amd64.deb ...
- Unpacking pkg-config (0.29.2-1) ...
- Selecting previously unselected package python3-pkg-resources.
- Preparing to unpack .../190-python3-pkg-resources_52.0.0-4_all.deb ...
- Unpacking python3-pkg-resources (52.0.0-4) ...
- Selecting previously unselected package python3-numpy.
- Preparing to unpack .../191-python3-numpy_1%3a1.19.5-1_amd64.deb ...
- Unpacking python3-numpy (1:1.19.5-1) ...
- Selecting previously unselected package rdkit-data.
- Preparing to unpack .../192-rdkit-data_202009.4-1_all.deb ...
- Unpacking rdkit-data (202009.4-1) ...
- Selecting previously unselected package python3-rdkit.
- Preparing to unpack .../193-python3-rdkit_202009.4-1_amd64.deb ...
- Unpacking python3-rdkit (202009.4-1) ...
- Selecting previously unselected package qt5-gtk-platformtheme:amd64.
- Preparing to unpack .../194-qt5-gtk-platformtheme_5.15.2+dfsg-9_amd64.deb ...
- Unpacking qt5-gtk-platformtheme:amd64 (5.15.2+dfsg-9) ...
- Selecting previously unselected package qttranslations5-l10n.
- Preparing to unpack .../195-qttranslations5-l10n_5.15.2-2_all.deb ...
- Unpacking qttranslations5-l10n (5.15.2-2) ...
- Selecting previously unselected package xdg-user-dirs.
- Preparing to unpack .../196-xdg-user-dirs_0.17-2_amd64.deb ...
- Unpacking xdg-user-dirs (0.17-2) ...
- Setting up python3-pkg-resources (52.0.0-4) ...
- Setting up libgraphite2-3:amd64 (1.3.14-1) ...
- Setting up libxcb-dri3-0:amd64 (1.14-3) ...
- Setting up liblcms2-2:amd64 (2.12~rc1-2) ...
- Setting up libpixman-1-0:amd64 (0.40.0-1) ...
- Setting up libwayland-server0:amd64 (1.18.0-2~exp1.1) ...
- Setting up libx11-xcb1:amd64 (2:1.7.2-1) ...
- Setting up libpciaccess0:amd64 (0.16-1) ...
- Setting up fontconfig (2.13.1-4.2) ...
- Regenerating fonts cache... 
- done.
- Setting up systemd-sysv (247.3-7) ...
- Setting up libdouble-conversion3:amd64 (3.1.5-6.1) ...
- Setting up libproxy1v5:amd64 (0.4.17-1) ...
- Setting up libxdamage1:amd64 (1:1.1.5-2) ...
- Setting up libxcb-xfixes0:amd64 (1.14-3) ...
- Setting up hicolor-icon-theme (0.17-2) ...
- Setting up libxi6:amd64 (2:1.7.10-1) ...
- Setting up libxcb-xinput0:amd64 (1.14-3) ...
- Setting up libxrender1:amd64 (1:0.9.10-1) ...
- Setting up libicu67:amd64 (67.1-7) ...
- Setting up libdatrie1:amd64 (0.2.13-1) ...
- Setting up xdg-user-dirs (0.17-2) ...
- Setting up libxcb-render0:amd64 (1.14-3) ...
- Setting up libglib2.0-0:amd64 (2.66.8-1) ...
- Setting up libboost-iostreams1.74.0:amd64 (1.74.0-9) ...
- Setting up libglvnd0:amd64 (1.3.2-1) ...
- Setting up libxcb-glx0:amd64 (1.14-3) ...
- Setting up liblab-gamut1:amd64 (2.42.2-5) ...
- Setting up libgdk-pixbuf2.0-common (2.42.2+dfsg-1) ...
- Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ...
- Setting up libxcb-shape0:amd64 (1.14-3) ...
- Setting up x11-common (1:7.7+22) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of start.
- Setting up libsensors-config (1:3.6.0-7) ...
- Setting up fonts-freefont-ttf (20120503-10) ...
- Setting up libnss-systemd:amd64 (247.3-7) ...
- First installation detected...
- Checking NSS setup...
- Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ...
- Setting up xkb-data (2.29-2) ...
- Setting up libnlopt0:amd64 (2.7.0-4+b2) ...
- Setting up libxcb-shm0:amd64 (1.14-3) ...
- Setting up libxcb-icccm4:amd64 (0.4.1-1.1) ...
- Setting up rdkit-data (202009.4-1) ...
- Setting up libcairo2:amd64 (1.16.0-5) ...
- Setting up libpcre2-16-0:amd64 (10.36-2) ...
- Setting up libcolord2:amd64 (1.4.5-3) ...
- Setting up libxcb-util1:amd64 (0.4.0-1+b1) ...
- Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ...
- Setting up libxcb-xkb1:amd64 (1.14-3) ...
- Setting up libxcb-image0:amd64 (0.4.0-1+b3) ...
- Setting up libmaeparser1:amd64 (1.2.4-1+b1) ...
- Setting up libxcb-present0:amd64 (1.14-3) ...
- Setting up libdconf1:amd64 (0.38.0-2) ...
- Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4+b1) ...
- Setting up autotools-dev (20180224.1+nmu1) ...
- Setting up libz3-4:amd64 (4.8.10-1) ...
- Setting up libblas3:amd64 (3.9.0-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libglib2.0-data (2.66.8-1) ...
- Setting up libxcb-xinerama0:amd64 (1.14-3) ...
- Setting up libpython3.9:amd64 (3.9.2-1) ...
- Setting up libllvm11:amd64 (1:11.0.1-2) ...
- Setting up qttranslations5-l10n (5.15.2-2) ...
- Setting up libepoxy0:amd64 (1.5.5-1) ...
- Setting up libxfixes3:amd64 (1:5.0.3-2) ...
- Setting up libxcb-sync1:amd64 (1.14-3) ...
- Setting up libpathplan4:amd64 (2.42.2-5) ...
- Setting up aglfn (1.7+git20191031.4036a9c-2) ...
- Setting up libavahi-common-data:amd64 (0.8-5) ...
- Setting up libann0 (1.1.2+doc-7) ...
- Setting up libdbus-1-3:amd64 (1.12.20-2) ...
- Setting up dbus (1.12.20-2) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of start.
- Setting up libsigsegv2:amd64 (2.13-1) ...
- Setting up libfribidi0:amd64 (1.0.8-2) ...
- Setting up libxinerama1:amd64 (2:1.1.4-2) ...
- Setting up systemd-timesyncd (247.3-7) ...
- Created symlink /etc/systemd/system/dbus-org.freedesktop.timesync1.service → /lib/systemd/system/systemd-timesyncd.service.
- Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service → /lib/systemd/system/systemd-timesyncd.service.
- Setting up libxrandr2:amd64 (2:1.5.1-1) ...
- Setting up pkg-config (0.29.2-1) ...
- Setting up libsensors5:amd64 (1:3.6.0-7) ...
- Setting up libltdl7:amd64 (2.4.6-15) ...
- Setting up libglapi-mesa:amd64 (20.3.5-1) ...
- Setting up libgfortran5:amd64 (10.2.1-6) ...
- Setting up libmtdev1:amd64 (1.1.6-1) ...
- Setting up libvulkan1:amd64 (1.2.162.0-1) ...
- Setting up libxcb-dri2-0:amd64 (1.14-3) ...
- Setting up libboost-serialization1.74.0:amd64 (1.74.0-9) ...
- Setting up libatk1.0-data (2.36.0-2) ...
- Setting up libcoordgen1:amd64 (1.4.2-1) ...
- Setting up libxshmfence1:amd64 (1.3-1) ...
- Setting up libxcb-randr0:amd64 (1.14-3) ...
- Setting up fonts-liberation (1:1.07.4-11) ...
- Setting up libpam-systemd:amd64 (247.3-7) ...
- Setting up libmd4c0:amd64 (0.4.7-2) ...
- Setting up liblua5.4-0:amd64 (5.4.2-2) ...
- Setting up libharfbuzz0b:amd64 (2.7.4-1) ...
- Setting up libthai-data (0.1.28-3) ...
- Setting up libwxbase3.0-0v5:amd64 (3.0.5.1+dfsg-2) ...
- Setting up libjson-glib-1.0-common (1.6.2-1) ...
- Setting up libcairo-gobject2:amd64 (1.16.0-5) ...
- Setting up libcdt5:amd64 (2.42.2-5) ...
- Setting up libatk1.0-0:amd64 (2.36.0-2) ...
- Setting up libcgraph6:amd64 (2.42.2-5) ...
- Setting up libwayland-egl1:amd64 (1.18.0-2~exp1.1) ...
- Setting up glib-networking-common (2.66.0-2) ...
- Setting up libboost-python1.74.0 (1.74.0-9) ...
- Setting up libnlopt-dev:amd64 (2.7.0-4+b2) ...
- Setting up libdrm-common (2.4.104-1) ...
- Setting up libelf1:amd64 (0.183-1) ...
- Setting up libxcomposite1:amd64 (1:0.4.5-1) ...
- Setting up libevdev2:amd64 (1.11.0+dfsg-1) ...
- Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u1) ...
- Setting up libgudev-1.0-0:amd64 (234-1) ...
- Setting up libsvm3:amd64 (3.24+ds-6) ...
- Setting up libwacom-common (1.8-2) ...
- Setting up libxkbcommon0:amd64 (1.0.3-2) ...
- Setting up libwayland-client0:amd64 (1.18.0-2~exp1.1) ...
- Setting up glib-networking-services (2.66.0-2) ...
- Setting up gnuplot-data (5.4.1+dfsg1-1+deb11u1) ...
- Setting up libgts-bin (0.7.6+darcs121130-4+b1) ...
- Setting up libice6:amd64 (2:1.0.10-1) ...
- Setting up liblapack3:amd64 (3.9.0-3) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libxtst6:amd64 (2:1.2.3-1) ...
- Setting up librdkit1 (202009.4-1) ...
- Setting up libxcursor1:amd64 (1:1.2.0-2) ...
- Setting up libavahi-common3:amd64 (0.8-5) ...
- Setting up m4 (1.4.18-5) ...
- Setting up libatspi2.0-0:amd64 (2.38.0-4) ...
- Setting up libjson-glib-1.0-0:amd64 (1.6.2-1) ...
- Setting up libatk-bridge2.0-0:amd64 (2.38.0-1) ...
- Setting up libthai0:amd64 (0.1.28-3) ...
- Setting up dbus-user-session (1.12.20-2) ...
- Setting up shared-mime-info (2.0-1) ...
- Setting up libxkbcommon-x11-0:amd64 (1.0.3-2) ...
- Setting up librdkit-dev (202009.4-1) ...
- Setting up libqt5core5a:amd64 (5.15.2+dfsg-9) ...
- Setting up python3-numpy (1:1.19.5-1) ...
- Setting up autoconf (2.69-14) ...
- Setting up libgvpr2:amd64 (2.42.2-5) ...
- Setting up libdrm2:amd64 (2.4.104-1) ...
- Setting up at-spi2-core (2.38.0-4) ...
- Setting up libqt5dbus5:amd64 (5.15.2+dfsg-9) ...
- Setting up libwayland-cursor0:amd64 (1.18.0-2~exp1.1) ...
- Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1) ...
- Setting up libwacom2:amd64 (1.8-2) ...
- Setting up libsm6:amd64 (2:1.2.3-1) ...
- Setting up libavahi-client3:amd64 (0.8-5) ...
- Setting up libdrm-amdgpu1:amd64 (2.4.104-1) ...
- Setting up automake (1:1.16.3-2) ...
- update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
- Setting up mesa-vulkan-drivers:amd64 (20.3.5-1) ...
- Setting up gtk-update-icon-cache (3.24.24-4+deb11u2) ...
- Setting up libdrm-nouveau2:amd64 (2.4.104-1) ...
- Setting up libgdk-pixbuf-xlib-2.0-0:amd64 (2.40.2-2) ...
- Setting up libgbm1:amd64 (20.3.5-1) ...
- Setting up libdrm-radeon1:amd64 (2.4.104-1) ...
- Setting up libpango-1.0-0:amd64 (1.46.2-3) ...
- Setting up libdrm-intel1:amd64 (2.4.104-1) ...
- Setting up libgl1-mesa-dri:amd64 (20.3.5-1) ...
- Setting up dconf-service (0.38.0-2) ...
- Setting up libqt5network5:amd64 (5.15.2+dfsg-9) ...
- Setting up libinput-bin (1.16.4-3) ...
- Setting up libegl-mesa0:amd64 (20.3.5-1) ...
- Setting up adwaita-icon-theme (3.38.0-1) ...
- update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
- Setting up libnotify4:amd64 (0.7.9-3) ...
- Setting up python3-rdkit (202009.4-1) ...
- Setting up libgdk-pixbuf2.0-0:amd64 (2.40.2-2) ...
- Setting up libxt6:amd64 (1:1.2.0-1) ...
- Setting up libwacom-bin (1.8-2) ...
- Setting up libcups2:amd64 (2.3.3op2-3+deb11u1) ...
- Setting up libgdk-pixbuf2.0-bin (2.42.2+dfsg-1) ...
- Setting up libegl1:amd64 (1.3.2-1) ...
- Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ...
- Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ...
- Setting up libinput10:amd64 (1.16.4-3) ...
- Setting up libxmu6:amd64 (2:1.1.2-2+b3) ...
- Setting up libglx-mesa0:amd64 (20.3.5-1) ...
- Setting up libglx0:amd64 (1.3.2-1) ...
- Setting up dconf-gsettings-backend:amd64 (0.38.0-2) ...
- Setting up libxaw7:amd64 (2:1.0.13-1.1) ...
- Setting up librsvg2-2:amd64 (2.50.3+dfsg-1) ...
- Setting up libgl1:amd64 (1.3.2-1) ...
- Setting up libgvc6 (2.42.2-5) ...
- Setting up librsvg2-common:amd64 (2.50.3+dfsg-1) ...
- Setting up libgtk-3-common (3.24.24-4+deb11u2) ...
- Setting up gsettings-desktop-schemas (3.38.0-2) ...
- Setting up graphviz (2.42.2-5) ...
- Setting up libqt5gui5:amd64 (5.15.2+dfsg-9) ...
- Setting up libqt5widgets5:amd64 (5.15.2+dfsg-9) ...
- Setting up libqt5printsupport5:amd64 (5.15.2+dfsg-9) ...
- Setting up glib-networking:amd64 (2.66.0-2) ...
- Setting up libsoup2.4-1:amd64 (2.72.0-2) ...
- Setting up libqt5svg5:amd64 (5.15.2-3) ...
- Setting up libsoup-gnome2.4-1:amd64 (2.72.0-2) ...
- Setting up librest-0.7-0:amd64 (0.8.1-1.1) ...
- Setting up libgtk-3-0:amd64 (3.24.24-4+deb11u2) ...
- Setting up libgtk-3-bin (3.24.24-4+deb11u2) ...
- Setting up qt5-gtk-platformtheme:amd64 (5.15.2+dfsg-9) ...
- Setting up libwxgtk3.0-gtk3-0v5:amd64 (3.0.5.1+dfsg-2) ...
- Setting up notification-daemon (3.20.0-4) ...
- Setting up gnuplot-qt (5.4.1+dfsg1-1+deb11u1) ...
- update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode
- Setting up libsvm-tools (3.24+ds-6) ...
- Setting up gnuplot (5.4.1+dfsg1-1+deb11u1) ...
- Processing triggers for libc-bin (2.31-13+deb11u3) ...
- Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1) ...

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved batteries.3.5.1  (cached)
-> retrieved bigarray-compat.1.1.0  (cached)
-> retrieved bst.7.0.0  (cached)
-> retrieved camltc.0.9.8  (cached)
-> retrieved cpm.12.0.0  (cached)
-> retrieved cppo.1.6.8  (cached)
-> retrieved cpu.2.0.0  (cached)
-> retrieved csexp.1.5.1  (cached)
-> retrieved dokeysto.4.0.0  (cached)
-> retrieved dokeysto_camltc.4.0.0  (cached)
-> retrieved dolog.6.0.0  (cached)
-> installed conf-pkg-config.2
-> installed conf-libsvm-tools.1.0.0
-> installed conf-which.1
-> installed conf-rdkit.1
-> installed conf-nlopt.1
-> installed conf-graphviz.0.1
-> installed conf-autoconf.0.1
-> retrieved dune.2.9.3  (cached)
-> retrieved dune-configurator.2.9.3  (cached)
-> retrieved extunix.0.4.0  (cached)
-> retrieved line_oriented.1.2.0  (cached)
-> retrieved logs.0.7.0  (cached)
-> retrieved lwt.5.5.0  (cached)
-> retrieved minicli.5.0.2  (cached)
-> retrieved mmap.1.2.0  (cached)
-> retrieved molenc.16.5.0  (cached)
-> retrieved nlopt-ocaml.0.5.1  (cached)
-> retrieved num.1.4  (cached)
-> retrieved oasis.0.4.11  (cached)
-> retrieved ocaml-compiler-libs.v0.12.4  (cached)
-> retrieved ocamlbuild.0.14.1  (cached)
-> retrieved ocamlfind.1.9.3  (cached)
-> retrieved ocamlgraph.2.0.0  (cached)
-> retrieved ocamlify.0.0.1  (cached)
-> retrieved ocamlmod.0.0.9  (cached)
-> retrieved ocplib-endian.1.2  (cached)
-> retrieved parany.12.1.2  (cached)
-> retrieved ppx_derivers.1.2.1  (cached)
-> retrieved ppxlib.0.26.0  (cached)
-> retrieved pyml.20220325  (cached)
-> retrieved result.1.5  (cached)
-> installed seq.base
-> retrieved sexplib0.v0.15.0  (cached)
-> retrieved stdcompat.18  (cached)
-> retrieved stdlib-shims.0.3.0  (cached)
-> retrieved topkg.1.0.5  (cached)
-> retrieved vector3.0.2.1  (cached)
-> installed ocamlfind.1.9.3
-> installed base-bytes.base
-> installed num.1.4
-> installed ocamlbuild.0.14.1
-> installed ocamlify.0.0.1
-> installed dune.2.9.3
-> installed vector3.0.2.1
-> installed bigarray-compat.1.1.0
-> installed cppo.1.6.8
-> installed csexp.1.5.1
-> installed dolog.6.0.0
-> installed minicli.5.0.2
-> installed ocaml-compiler-libs.v0.12.4
-> installed ocamlmod.0.0.9
-> installed cpu.2.0.0
-> installed mmap.1.2.0
-> installed ocplib-endian.1.2
-> installed ppx_derivers.1.2.1
-> installed result.1.5
-> installed sexplib0.v0.15.0
-> installed stdlib-shims.0.3.0
-> installed topkg.1.0.5
-> installed parany.12.1.2
-> installed dune-configurator.2.9.3
-> installed ocamlgraph.2.0.0
-> installed lwt.5.5.0
-> installed logs.0.7.0
-> installed ppxlib.0.26.0
-> installed camltc.0.9.8
-> installed stdcompat.18
-> installed batteries.3.5.1
-> installed pyml.20220325
-> installed extunix.0.4.0
-> installed line_oriented.1.2.0
-> installed bst.7.0.0
-> installed cpm.12.0.0
-> installed dokeysto.4.0.0
-> installed dokeysto_camltc.4.0.0
-> installed molenc.16.5.0
-> installed oasis.0.4.11
-> installed nlopt-ocaml.0.5.1
Done.
# Run eval $(opam env) to update the current shell environment
The following actions will be performed:
  - install svmwrap 4.0.0

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing  1/3:
-> retrieved svmwrap.4.0.0  (cached)
Processing  2/3: [svmwrap: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "svmwrap" "-j" "31" (CWD=/home/opam/.opam/4.14/.opam-switch/build/svmwrap.4.0.0)
-> compiled  svmwrap.4.0.0
-> installed svmwrap.4.0.0
Done.
# Run eval $(opam env) to update the current shell environment
2022-04-07 16:58.19 ---> saved as "976f3d6b3bf82b02c5eae7e012f4e5d4c42cf768dd253379c2ac04ca58853c67"

/home/opam: (run (network host)
                 (shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://security.debian.org/debian-security bullseye-security InRelease
- Hit:2 http://deb.debian.org/debian bullseye InRelease
- Hit:3 http://deb.debian.org/debian bullseye-updates InRelease
- Reading package lists...
- 
2022-04-07 16:59.38 ---> saved as "a5c1d6ba2cf0e53ba15e9316313173e93125244989145afe5ca2bfb52e7bb243"

/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
                 (network host)
                 (shell  "opam remove svmwrap.4.0.0 && opam install --deps-only --with-test svmwrap.4.0.0 && opam install -v --with-test svmwrap.4.0.0;\
                        \n        res=$?;\
                        \n        test \"$res\" != 31 && exit \"$res\";\
                        \n        export OPAMCLI=2.0;\
                        \n        build_dir=$(opam var prefix)/.opam-switch/build;\
                        \n        failed=$(ls \"$build_dir\");\
                        \n        for pkg in $failed; do\
                        \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-11\\\"\"; then\
                        \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
                        \n          fi;\
                        \n        done;\
                        \n        exit 1"))
The following actions will be performed:
  - remove svmwrap 4.0.0

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> removed   svmwrap.4.0.0
Done.
# Run eval $(opam env) to update the current shell environment
Nothing to do.
# Run eval $(opam env) to update the current shell environment
The following actions will be performed:
  - install svmwrap 4.0.0

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing  1/3:
-> retrieved svmwrap.4.0.0  (cached)
Processing  2/3: [svmwrap: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "svmwrap" "-j" "31" (CWD=/home/opam/.opam/4.14/.opam-switch/build/svmwrap.4.0.0)
-> compiled  svmwrap.4.0.0
-> installed svmwrap.4.0.0
Done.
# Run eval $(opam env) to update the current shell environment
2022-04-07 17:02.47 ---> saved as "3378cd88fce433ac962ddfaa028ea593af782ae6bc90d4a653bb729f121d590e"
Job succeeded
2022-04-07 17:03.24: Job succeeded