(for PR #24267)
2025-11-10 11:02.17: New job: test orrandomForest.3.0.0, using opam dev
from https://github.com/ocaml/opam-repository.git#refs/pull/24267/head (41de505ec8ff3637ab3cb06a41ccbc29683f566c)
on ubuntu-22.04-ocaml-4.14/amd64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/24267/head" && git reset --hard 41de505e
git fetch origin master
git merge --no-edit 21f97b2e6d7c617fc0a79cc8e59b2e10690960e1
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:ubuntu-22.04-ocaml-4.14@sha256:0bcf693184f804927347e020ee322d6b9d855f9f8c034b79da741eb91856a650
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn orrandomForest.3.0.0 3.0.0
RUN opam reinstall orrandomForest.3.0.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"ubuntu-22.04\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'orrandomForest.3.0.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN (opam reinstall --with-test orrandomForest.3.0.0) || true
RUN opam reinstall --with-test --verbose orrandomForest.3.0.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"ubuntu-22.04\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'orrandomForest.3.0.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2025-11-10 11:02.17: Using cache hint "ocaml/opam:ubuntu-22.04-ocaml-4.14@sha256:0bcf693184f804927347e020ee322d6b9d855f9f8c034b79da741eb91856a650-orrandomForest.3.0.0-41de505ec8ff3637ab3cb06a41ccbc29683f566c"
2025-11-10 11:02.17: Using OBuilder spec:
((from ocaml/opam:ubuntu-22.04-ocaml-4.14@sha256:0bcf693184f804927347e020ee322d6b9d855f9f8c034b79da741eb91856a650)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "opam option solver=builtin-0install && opam config report"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn orrandomForest.3.0.0 3.0.0"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall orrandomForest.3.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"ubuntu-22.04\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'orrandomForest.3.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (network host)
(shell "(opam reinstall --with-test orrandomForest.3.0.0) || true"))
(run (shell "opam reinstall --with-test --verbose orrandomForest.3.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"ubuntu-22.04\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'orrandomForest.3.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2025-11-10 11:02.17: Waiting for resource in pool OCluster
2025-11-10 12:37.57: Waiting for worker…
2025-11-10 12:43.27: Got resource from pool OCluster
Building on doris.caelum.ci.dev
All commits already cached
HEAD is now at 21f97b2e6d Merge pull request #28836 from dbuenzli/b0-publish-bytesrw.0.3.0
Merge made by the 'ort' strategy.
packages/odnnr/odnnr.2.0.0/opam | 4 +---
packages/oplsr/oplsr.8.0.1/opam | 3 +--
packages/orrandomForest/orrandomForest.1.0.0/opam | 5 +----
packages/orrandomForest/orrandomForest.2.0.1/opam | 7 +------
packages/orrandomForest/orrandomForest.3.0.0/opam | 7 +------
packages/orsvm_e1071/orsvm_e1071.2.0.0/opam | 3 ---
packages/orsvm_e1071/orsvm_e1071.3.0.0/opam | 5 +----
packages/orsvm_e1071/orsvm_e1071.3.0.1/opam | 2 +-
packages/orsvm_e1071/orsvm_e1071.3.0.2/opam | 2 +-
packages/orsvm_e1071/orsvm_e1071.4.0.0/opam | 2 +-
packages/orxgboost/orxgboost.1.0.1/opam | 5 +----
packages/orxgboost/orxgboost.1.1.0/opam | 5 +----
packages/orxgboost/orxgboost.1.2.0/opam | 5 +----
13 files changed, 12 insertions(+), 43 deletions(-)
(from ocaml/opam:ubuntu-22.04-ocaml-4.14@sha256:0bcf693184f804927347e020ee322d6b9d855f9f8c034b79da741eb91856a650)
Unable to find image 'ocaml/opam:ubuntu-22.04-ocaml-4.14@sha256:0bcf693184f804927347e020ee322d6b9d855f9f8c034b79da741eb91856a650' locally
docker.io/ocaml/opam@sha256:0bcf693184f804927347e020ee322d6b9d855f9f8c034b79da741eb91856a650: Pulling from ocaml/opam
d90256f9c652: Pulling fs layer
d90256f9c652: Verifying Checksum
d90256f9c652: Download complete
d90256f9c652: Pull complete
Digest: sha256:0bcf693184f804927347e020ee322d6b9d855f9f8c034b79da741eb91856a650
Status: Downloaded newer image for ocaml/opam@sha256:0bcf693184f804927347e020ee322d6b9d855f9f8c034b79da741eb91856a650
2025-11-10 12:43.35 ---> using "dac6fc7b6b61231375ffe3497eb9288520f07ec57e98d2015d7657483c96e0ad" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2025-11-10 12:43.35 ---> using "3ada9f307ef4a756872eb97d8a66be22abea00d4cdd0b72c72e11bd7abfa6dbc" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Continue? [Y/n] y
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2025-11-10 12:43.35 ---> using "2168acca31cef55837009a9c3eb926cbb995b6f151b21ed8fe13f6d16e7ff35d" from cache
/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version 2.5.0~alpha1
# self-upgrade no
# system arch=x86_64 os=linux os-distribution=ubuntu os-version=22.04
# solver builtin-0install
# install-criteria -changed,-count[avoid-version,solution]
# upgrade-criteria -count[avoid-version,solution]
# jobs 255
# repositories 1 (version-controlled)
# pinned 1 (version)
# current-switch 4.14
# invariant ["ocaml-base-compiler" {= "4.14.2"}]
# compiler-packages ocaml-base-compiler.4.14.2, ocaml-options-vanilla.1
# ocaml:native true
# ocaml:native-tools true
# ocaml:native-dynlink true
# ocaml:stubsdir /home/opam/.opam/4.14/lib/ocaml/stublibs:/home/opam/.opam/4.14/lib/ocaml
# ocaml:preinstalled false
# ocaml:compiler 4.14.2
2025-11-10 12:43.35 ---> using "65eb563df0510c568d2c81756ca0ffc2ac2fe18553ac41293a71479c86f17944" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2025-11-10 12:43.35 ---> using "c64df24b3b390dcf047d423288b441fd8469102e86c3583eb31b97f1da7eddd9" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2025-11-10 12:43.36 ---> using "bc7d3cc6c1e9e585145a96482e0c6cb961cdcba1234abcd2be02cc2531e1d34b" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2025-11-10 12:43.41 ---> saved as "ac2ea9946f1839eea40fd477f53f477567fc830d90c34eee71ba6cfb4f6b20ea"
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://security.ubuntu.com/ubuntu jammy-security InRelease [129 kB]
- Hit:2 http://archive.ubuntu.com/ubuntu jammy InRelease
- Get:3 http://archive.ubuntu.com/ubuntu jammy-updates InRelease [128 kB]
- Get:4 http://archive.ubuntu.com/ubuntu jammy-backports InRelease [127 kB]
- Fetched 384 kB in 6s (61.3 kB/s)
- Reading package lists...
-
2025-11-10 12:43.49 ---> saved as "1c74a0716a1b6cf2507a745876d5378f7077f7b98645d972e9b91803657bf346"
/home/opam: (run (shell "opam pin add -k version -yn orrandomForest.3.0.0 3.0.0"))
orrandomForest is now pinned to version 3.0.0
2025-11-10 12:43.50 ---> saved as "3f6b0c411cf0cd4e5fd77fc8dad1cf37157669de7447bea098e0a24fba454c11"
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall orrandomForest.3.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"ubuntu-22.04\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'orrandomForest.3.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
orrandomForest.3.0.0 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 14 packages
- install batteries 3.10.0 [required by orrandomForest]
- install camlp-streams 5.0.1 [required by batteries]
- install conf-autoconf 0.2 [required by cpu]
- install conf-r 1.0.0 [required by orrandomForest]
- install cpm 12.2.0 [required by orrandomForest]
- install cpu 2.0.0 [required by parany]
- install dolog 6.0.0 [required by orrandomForest]
- install dune 3.20.2 [required by orrandomForest]
- install line_oriented 1.3.0 [required by orrandomForest]
- install minicli 5.0.2 [required by orrandomForest]
- install num 1.6 [required by batteries]
- install ocamlfind 1.9.8 [required by batteries]
- install orrandomForest 3.0.0 (pinned)
- install parany 14.0.1 [required by orrandomForest]
The following system packages will first need to be installed:
autoconf r-base-core
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "r-base-core"
- debconf: delaying package configuration, since apt-utils is not installed
- Selecting previously unselected package libpython3.10-minimal:amd64.
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- Selecting previously unselected package libpython3.10-stdlib:amd64.
- Preparing to unpack .../3-libpython3.10-stdlib_3.10.12-1~22.04.11_amd64.deb ...
- Unpacking libpython3.10-stdlib:amd64 (3.10.12-1~22.04.11) ...
- Selecting previously unselected package python3.10.
- Preparing to unpack .../4-python3.10_3.10.12-1~22.04.11_amd64.deb ...
- Unpacking python3.10 (3.10.12-1~22.04.11) ...
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- Selecting previously unselected package libcryptsetup12:amd64.
- Preparing to unpack .../5-libcryptsetup12_2%3a2.4.3-1ubuntu1.3_amd64.deb ...
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- Setting up systemd (249.11-0ubuntu3.17) ...
- Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /lib/systemd/system/getty@.service.
- Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target.
- Created symlink /etc/systemd/system/dbus-org.freedesktop.resolve1.service → /lib/systemd/system/systemd-resolved.service.
- Created symlink /etc/systemd/system/multi-user.target.wants/systemd-resolved.service → /lib/systemd/system/systemd-resolved.service.
- ln: failed to create symbolic link '/etc/resolv.conf': Device or resource busy
- Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service.
- Initializing machine ID from random generator.
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- Setting up media-types (7.0.0) ...
- Setting up libpcrecpp0v5:amd64 (2:8.39-13ubuntu0.22.04.1) ...
- Setting up libtext-iconv-perl (1.7-7build3) ...
- Setting up libgraphite2-3:amd64 (1.3.14-1build2) ...
- Setting up libxcb-dri3-0:amd64 (1.14-3ubuntu3) ...
- Setting up liblcms2-2:amd64 (2.12~rc1-2build2) ...
- Setting up libpixman-1-0:amd64 (0.40.0-1ubuntu0.22.04.1) ...
- Setting up bzip2-doc (1.0.8-5build1) ...
- Setting up libpaper1:amd64 (1.1.28build2) ...
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- Creating config file /etc/papersize with new version
- Setting up libx11-xcb1:amd64 (2:1.7.5-1ubuntu0.3) ...
- Setting up libpciaccess0:amd64 (0.16-3) ...
- Setting up fontconfig (2.13.1-4.2ubuntu5) ...
- Regenerating fonts cache...
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- Setting up libjpeg-turbo8-dev:amd64 (2.1.2-0ubuntu1) ...
- Setting up systemd-sysv (249.11-0ubuntu3.17) ...
- Setting up libncurses-dev:amd64 (6.3-2ubuntu0.1) ...
- Setting up libtie-ixhash-perl (1.23-2.1) ...
- Setting up libxdamage1:amd64 (1:1.1.5-2build2) ...
- Setting up libxcb-xfixes0:amd64 (1.14-3ubuntu3) ...
- Setting up r-doc-html (4.1.2-1ubuntu2) ...
- Setting up libpcre16-3:amd64 (2:8.39-13ubuntu0.22.04.1) ...
- Setting up hicolor-icon-theme (0.17-2) ...
- Setting up libxi6:amd64 (2:1.8-1build1) ...
- Setting up tilix-common (1.9.4-2build1) ...
- Setting up libfont-afm-perl (1.20-3) ...
- Setting up libxrender1:amd64 (1:0.9.10-1build4) ...
- Setting up libvte-2.91-common (0.68.0-1ubuntu0.1) ...
- Setting up libdatrie1:amd64 (0.2.13-2) ...
- Setting up xdg-user-dirs (0.17-2ubuntu4) ...
- Setting up libpng-tools (1.6.37-3build5) ...
- Setting up libxcb-render0:amd64 (1.14-3ubuntu3) ...
- Setting up libclone-perl (0.45-1build3) ...
- Setting up libglib2.0-0:amd64 (2.72.4-0ubuntu2.6) ...
- Setting up libglvnd0:amd64 (1.4.0-1) ...
- Setting up libio-stringy-perl (2.111-3) ...
- Setting up libhtml-tagset-perl (3.20-4) ...
- Setting up libauthen-sasl-perl (2.1600-1.1) ...
- Setting up libxcb-glx0:amd64 (1.14-3ubuntu3) ...
- Setting up liblwp-mediatypes-perl (6.04-1) ...
- Setting up libgdk-pixbuf2.0-common (2.42.8+dfsg-1ubuntu0.4) ...
- Setting up libxcb-shape0:amd64 (1.14-3ubuntu3) ...
- Setting up x11-common (1:7.7+23ubuntu2) ...
- invoke-rc.d: could not determine current runlevel
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- Setting up libtry-tiny-perl (0.31-1) ...
- Setting up libsensors-config (1:3.6.0-7ubuntu1) ...
- Setting up libxxf86dga1:amd64 (2:1.1.5-0ubuntu3) ...
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- Setting up libnss-systemd:amd64 (249.11-0ubuntu3.17) ...
- First installation detected...
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- Setting up xkb-data (2.33-1) ...
- Setting up libencode-locale-perl (1.05-1.1) ...
- Setting up libxcb-shm0:amd64 (1.14-3ubuntu3) ...
- Setting up libpaper-utils (1.1.28build2) ...
- Setting up libreadline-dev:amd64 (8.1.2-1) ...
- Setting up libunwind8:amd64 (1.3.2-2build2.1) ...
- Setting up libcairo2:amd64 (1.16.0-5ubuntu2) ...
- Setting up libpcre2-16-0:amd64 (10.39-3ubuntu0.1) ...
- Setting up libcolord2:amd64 (1.4.6-1) ...
- Setting up libxxf86vm1:amd64 (1:1.1.4-1build3) ...
- Setting up tzdata (2025b-0ubuntu0.22.04.1) ...
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- Current default time zone: 'Europe/London'
- Local time is now: Mon Nov 10 12:46:42 GMT 2025.
- Universal Time is now: Mon Nov 10 12:46:42 UTC 2025.
- Run 'dpkg-reconfigure tzdata' if you wish to change it.
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- Setting up libxcb-present0:amd64 (1.14-3ubuntu3) ...
- Setting up libdconf1:amd64 (0.40.0-3ubuntu0.1) ...
- Setting up zip (3.0-12build2) ...
- Setting up libfontenc1:amd64 (1:1.1.4-1build3) ...
- Setting up autotools-dev (20220109.1) ...
- Setting up libpcre2-32-0:amd64 (10.39-3ubuntu0.1) ...
- Setting up libblas3:amd64 (3.10.0-2ubuntu1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libglib2.0-data (2.72.4-0ubuntu2.6) ...
- Setting up libdata-dump-perl (1.25-1) ...
- Setting up libepoxy0:amd64 (1.5.10-1) ...
- Setting up libxfixes3:amd64 (1:6.0.0-1) ...
- Setting up libxcb-sync1:amd64 (1.14-3ubuntu3) ...
- Setting up libipc-system-simple-perl (1.30-1) ...
- Setting up libxml-xpathengine-perl (0.14-1) ...
- Setting up libavahi-common-data:amd64 (0.8-5ubuntu5.2) ...
- Setting up libdbus-1-3:amd64 (1.12.20-2ubuntu4.1) ...
- Setting up dbus (1.12.20-2ubuntu4.1) ...
- Setting up libsigsegv2:amd64 (2.13-1ubuntu3) ...
- Setting up libfribidi0:amd64 (1.0.8-2ubuntu3.1) ...
- Setting up libxinerama1:amd64 (2:1.1.4-3) ...
- Setting up libxv1:amd64 (2:1.0.11-1build2) ...
- Setting up libpcre32-3:amd64 (2:8.39-13ubuntu0.22.04.1) ...
- Setting up systemd-timesyncd (249.11-0ubuntu3.17) ...
- Created symlink /etc/systemd/system/dbus-org.freedesktop.timesync1.service → /lib/systemd/system/systemd-timesyncd.service.
- Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service → /lib/systemd/system/systemd-timesyncd.service.
- Setting up libio-html-perl (1.004-2) ...
- Setting up libxrandr2:amd64 (2:1.5.2-1build1) ...
- Setting up libtcl8.6:amd64 (8.6.12+dfsg-1build1) ...
- Setting up pkg-config (0.29.2-1ubuntu3) ...
- Setting up libsensors5:amd64 (1:3.6.0-7ubuntu1) ...
- Setting up libglapi-mesa:amd64 (23.2.1-1ubuntu3.1~22.04.3) ...
- Setting up libgfortran5:amd64 (12.3.0-1ubuntu1~22.04.2) ...
- Setting up libtimedate-perl (2.3300-2) ...
- Setting up liblzma-dev:amd64 (5.2.5-2ubuntu1) ...
- Setting up libxcb-dri2-0:amd64 (1.14-3ubuntu3) ...
- Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu9.2) ...
- Setting up libatk1.0-data (2.36.0-3build1) ...
- Setting up libpcre2-posix3:amd64 (10.39-3ubuntu0.1) ...
- Setting up dmsetup (2:1.02.175-2.1ubuntu5) ...
- Setting up libxshmfence1:amd64 (1.3-1build4) ...
- Setting up libxcb-randr0:amd64 (1.14-3ubuntu3) ...
- Setting up libncurses5-dev:amd64 (6.3-2ubuntu0.1) ...
- Setting up libmpdec3:amd64 (2.5.1-2build2) ...
- Setting up libpam-systemd:amd64 (249.11-0ubuntu3.17) ...
- Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu3.2) ...
- Setting up libthai-data (0.1.29-1build1) ...
- Setting up libgirepository-1.0-1:amd64 (1.72.0-1) ...
- Setting up libcairo-gobject2:amd64 (1.16.0-5ubuntu2) ...
- Setting up libatk1.0-0:amd64 (2.36.0-3build1) ...
- Setting up libwayland-egl1:amd64 (1.20.0-1ubuntu0.1) ...
- Setting up libxss1:amd64 (1:1.2.3-1build2) ...
- Setting up libxkbfile1:amd64 (1:1.1.0-1build3) ...
- Setting up libjpeg8-dev:amd64 (8c-2ubuntu10) ...
- Setting up libdrm-common (2.4.113-2~ubuntu0.22.04.1) ...
- Setting up libelf1:amd64 (0.186-1ubuntu0.1) ...
- Setting up libxcomposite1:amd64 (1:0.4.5-1build2) ...
- Setting up xdg-utils (1.1.3-4.1ubuntu3~22.04.1) ...
- update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/open.1.gz because associated file /usr/share/man/man1/xdg-open.1.gz (of link group open) doesn't exist
- Setting up liburi-perl (5.10-1) ...
- Setting up libx11-protocol-perl (0.56-7.1) ...
- Setting up libblas-dev:amd64 (3.10.0-2ubuntu1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
- Setting up libicu70:amd64 (70.1-2) ...
- Setting up libbz2-dev:amd64 (1.0.8-5build1) ...
- Setting up libxkbcommon0:amd64 (1.4.0-1) ...
- Setting up libwayland-client0:amd64 (1.20.0-1ubuntu0.1) ...
- Setting up libnet-ssleay-perl:amd64 (1.92-1build2) ...
- Setting up libice6:amd64 (2:1.0.10-1build2) ...
- Setting up libhttp-date-perl (6.05-1) ...
- Setting up session-migration (0.3.6) ...
- Created symlink /etc/systemd/user/graphical-session-pre.target.wants/session-migration.service → /usr/lib/systemd/user/session-migration.service.
- Setting up liblapack3:amd64 (3.10.0-2ubuntu1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libxft2:amd64 (2.3.4-1) ...
- Setting up libfile-basedir-perl (0.09-1) ...
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- Setting up libpcre2-dev:amd64 (10.39-3ubuntu0.1) ...
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- Setting up libgfortran-11-dev:amd64 (11.4.0-1ubuntu1~22.04.2) ...
- Setting up libxtst6:amd64 (2:1.2.3-1build4) ...
- Setting up libtk8.6:amd64 (8.6.12-1build1) ...
- Setting up libxcursor1:amd64 (1:1.2.0-2build4) ...
- Setting up libpng-dev:amd64 (1.6.37-3build5) ...
- Setting up libavahi-common3:amd64 (0.8-5ubuntu5.2) ...
- Setting up libjpeg-dev:amd64 (8c-2ubuntu10) ...
- Setting up libnet-http-perl (6.22-1) ...
- Setting up m4 (1.4.18-5ubuntu2) ...
- Setting up libatspi2.0-0:amd64 (2.44.0-3) ...
- Setting up libpython3.10-stdlib:amd64 (3.10.12-1~22.04.11) ...
- Setting up libatk-bridge2.0-0:amd64 (2.38.0-3) ...
- Setting up libthai0:amd64 (0.1.29-1build1) ...
- Setting up dbus-user-session (1.12.20-2ubuntu4.1) ...
- Setting up liblapack-dev:amd64 (3.10.0-2ubuntu1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- Setting up icu-devtools (70.1-2) ...
- Setting up gir1.2-glib-2.0:amd64 (1.72.0-1) ...
- Setting up libfile-desktopentry-perl (0.22-2) ...
- Setting up gfortran-11 (11.4.0-1ubuntu1~22.04.2) ...
- Setting up autoconf (2.71-2) ...
- Setting up libwww-robotrules-perl (6.02-1) ...
- Setting up libdrm2:amd64 (2.4.113-2~ubuntu0.22.04.1) ...
- Setting up libwayland-cursor0:amd64 (1.20.0-1ubuntu0.1) ...
- Setting up libhtml-parser-perl:amd64 (3.76-1build2) ...
- Setting up libsm6:amd64 (2:1.2.3-1build2) ...
- Setting up libicu-dev:amd64 (70.1-2) ...
- Setting up libxml2:amd64 (2.9.13+dfsg-1ubuntu0.10) ...
- Setting up libavahi-client3:amd64 (0.8-5ubuntu5.2) ...
- Setting up libio-socket-ssl-perl (2.074-2) ...
- Setting up libpython3-stdlib:amd64 (3.10.6-1~22.04.1) ...
- Setting up libhttp-message-perl (6.36-1) ...
- Setting up libdrm-amdgpu1:amd64 (2.4.113-2~ubuntu0.22.04.1) ...
- Setting up libhtml-form-perl (6.07-1) ...
- Setting up automake (1:1.16.5-1.3) ...
- update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/automake.1.gz because associated file /usr/share/man/man1/automake-1.16.1.gz (of link group automake) doesn't exist
- update-alternatives: warning: skip creation of /usr/share/man/man1/aclocal.1.gz because associated file /usr/share/man/man1/aclocal-1.16.1.gz (of link group automake) doesn't exist
- Setting up libhttp-negotiate-perl (6.01-1) ...
- Setting up libdrm-nouveau2:amd64 (2.4.113-2~ubuntu0.22.04.1) ...
- Setting up python3.10 (3.10.12-1~22.04.11) ...
- Setting up libhttp-cookies-perl (6.10-1) ...
- Setting up libdrm-radeon1:amd64 (2.4.113-2~ubuntu0.22.04.1) ...
- Setting up libhtml-tree-perl (5.07-2) ...
- Setting up libpango-1.0-0:amd64 (1.50.6+ds-2ubuntu1) ...
- Setting up libdrm-intel1:amd64 (2.4.113-2~ubuntu0.22.04.1) ...
- Setting up dconf-service (0.40.0-3ubuntu0.1) ...
- Setting up python3 (3.10.6-1~22.04.1) ...
- running python rtupdate hooks for python3.10...
- running python post-rtupdate hooks for python3.10...
- Setting up libhtml-format-perl (2.12-1.1) ...
- Setting up gfortran (4:11.2.0-1ubuntu1) ...
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
- Setting up libllvm11:amd64 (1:11.1.0-6) ...
- Setting up libnet-smtp-ssl-perl (1.04-1) ...
- Setting up libmailtools-perl (2.21-1) ...
- Setting up python3-gi (3.42.1-0ubuntu1) ...
- Setting up shared-mime-info (2.1-2) ...
- Setting up libxt6:amd64 (1:1.2.1-1) ...
- Setting up libcups2:amd64 (2.4.1op1-1ubuntu4.12) ...
- Setting up libhttp-daemon-perl (6.13-1ubuntu0.1) ...
- Setting up libllvm15:amd64 (1:15.0.7-0ubuntu0.22.04.3) ...
- Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.8+dfsg-1ubuntu0.4) ...
- Setting up libpangoft2-1.0-0:amd64 (1.50.6+ds-2ubuntu1) ...
- Setting up libpangocairo-1.0-0:amd64 (1.50.6+ds-2ubuntu1) ...
- Setting up libgl1-amber-dri:amd64 (21.3.9-0ubuntu1~22.04.1) ...
- Setting up libfile-mimeinfo-perl (0.31-1) ...
- Setting up gtk-update-icon-cache (3.24.33-1ubuntu2.2) ...
- Setting up python3-dbus (1.2.18-3build1) ...
- Setting up libxmu6:amd64 (2:1.1.3-3) ...
- Setting up libphobos2-ldc-shared98:amd64 (1:1.28.0-1ubuntu1) ...
- Setting up dconf-gsettings-backend:amd64 (0.40.0-3ubuntu0.1) ...
- Setting up libgl1-mesa-dri:amd64 (23.2.1-1ubuntu3.1~22.04.3) ...
- Setting up libxaw7:amd64 (2:1.0.14-1) ...
- Setting up x11-xserver-utils (7.7+9build1) ...
- Setting up librsvg2-2:amd64 (2.52.5+dfsg-3ubuntu0.2) ...
- Setting up r-base-core (4.1.2-1ubuntu2) ...
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- Creating config file /etc/R/Renviron with new version
- Setting up librsvg2-common:amd64 (2.52.5+dfsg-3ubuntu0.2) ...
- Setting up r-cran-lattice (0.20-45-1) ...
- Setting up r-cran-nlme (3.1.155-1) ...
- Setting up libgdk-pixbuf2.0-bin (2.42.8+dfsg-1ubuntu0.4) ...
- Setting up r-cran-cluster (2.1.2-2) ...
- Setting up r-cran-nnet (7.3-17-1) ...
- Setting up libgtk-3-common (3.24.33-1ubuntu2.2) ...
- Setting up networkd-dispatcher (2.1-2ubuntu0.22.04.2) ...
- Created symlink /etc/systemd/system/multi-user.target.wants/networkd-dispatcher.service → /lib/systemd/system/networkd-dispatcher.service.
- Setting up gsettings-desktop-schemas (42.0-1ubuntu1) ...
- Setting up r-cran-codetools (0.2-18-1) ...
- Setting up r-cran-boot (1.3-28-2) ...
- Setting up libglx-mesa0:amd64 (23.2.1-1ubuntu3.1~22.04.3) ...
- Setting up r-base-dev (4.1.2-1ubuntu2) ...
- Setting up libglx0:amd64 (1.4.0-1) ...
- Setting up r-cran-spatial (7.3-15-1) ...
- Setting up r-cran-mass (7.3-55-1) ...
- Setting up r-cran-foreign (0.8.82-1) ...
- Setting up libgl1:amd64 (1.4.0-1) ...
- Setting up r-cran-matrix (1.4-0-1) ...
- Setting up r-cran-kernsmooth (2.23-20-1) ...
- Setting up r-cran-mgcv (1.8-39-1) ...
- Setting up at-spi2-core (2.44.0-3) ...
- Setting up x11-utils (7.7+5build2) ...
- Setting up r-cran-class (7.3-20-1) ...
- Setting up r-cran-survival (3.2-13-1) ...
- Setting up r-cran-rpart (4.1.16-1) ...
- Setting up r-recommended (4.1.2-1ubuntu2) ...
- Setting up adwaita-icon-theme (41.0-1ubuntu1) ...
- update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
- Setting up liblwp-protocol-https-perl (6.10-1) ...
- Setting up libwww-perl (6.61-1) ...
- Setting up libgtk-3-0:amd64 (3.24.33-1ubuntu2.2) ...
- Setting up libgtk-3-bin (3.24.33-1ubuntu2.2) ...
- Setting up libvte-2.91-0:amd64 (0.68.0-1ubuntu0.1) ...
- Setting up humanity-icon-theme (0.6.16) ...
- Setting up libvted-3-0:amd64 (3.10.0-1ubuntu1) ...
- Setting up libgtkd-3-0:amd64 (3.10.0-1ubuntu1) ...
- Setting up tilix (1.9.4-2build1) ...
- update-alternatives: using /usr/bin/tilix.wrapper to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/x-terminal-emulator.1.gz because associated file /usr/share/man/man1/tilix.1.gz (of link group x-terminal-emulator) doesn't exist
- Setting up libxml-parser-perl:amd64 (2.46-3build1) ...
- Setting up ubuntu-mono (20.10-0ubuntu2) ...
- Setting up libxml-twig-perl (1:3.52-1) ...
- Setting up libnet-dbus-perl (1.2.0-1build3) ...
- Processing triggers for libc-bin (2.35-0ubuntu3.11) ...
- Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.42.8+dfsg-1ubuntu0.4) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved batteries.3.10.0 (cached)
-> retrieved camlp-streams.5.0.1 (cached)
-> retrieved conf-r.1.0.0 (cached)
-> retrieved cpm.12.2.0 (cached)
-> retrieved cpu.2.0.0 (cached)
-> retrieved dolog.6.0.0 (cached)
-> installed conf-autoconf.0.2
-> installed conf-r.1.0.0
-> retrieved dune.3.20.2 (cached)
-> retrieved line_oriented.1.3.0 (cached)
-> retrieved minicli.5.0.2 (cached)
-> retrieved num.1.6 (cached)
-> retrieved ocamlfind.1.9.8 (cached)
-> retrieved orrandomForest.3.0.0 (cached)
-> retrieved parany.14.0.1 (cached)
-> installed num.1.6
-> installed ocamlfind.1.9.8
-> installed dune.3.20.2
-> installed dolog.6.0.0
-> installed minicli.5.0.2
-> installed camlp-streams.5.0.1
-> installed cpu.2.0.0
-> installed parany.14.0.1
-> installed batteries.3.10.0
-> installed line_oriented.1.3.0
-> installed cpm.12.2.0
-> installed orrandomForest.3.0.0
Done.
<><> orrandomForest.3.0.0 installed successfully ><><><><><><><><><><><><><><><>
=> Please interact with R to install needed things in user-space:
R
install.packages('Marix', repos='http://cran.r-project.org')
install.packages('randomForest', repos='http://cran.r-project.org')
# To update the current shell environment, run: eval $(opam env)
2025-11-10 12:47.11 ---> saved as "176573356718e46786e0faf6be4758e7b1ca4efa2ff483df459ef12676096603"
/home/opam: (run (network host)
(shell "(opam reinstall --with-test orrandomForest.3.0.0) || true"))
The following actions will be performed:
=== recompile 2 packages
- recompile cpm 12.2.0 [uses conf-gnuplot]
- recompile orrandomForest 3.0.0 (pinned)
=== install 1 package
- install conf-gnuplot 0.1 [required by orrandomForest]
The following system packages will first need to be installed:
gnuplot-x11
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "gnuplot-x11"
- debconf: delaying package configuration, since apt-utils is not installed
- Selecting previously unselected package aglfn.
- (Reading database ...
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(Reading database ... 39410 files and directories currently installed.)
- Preparing to unpack .../0-aglfn_1.7+git20191031.4036a9c-2_all.deb ...
- Unpacking aglfn (1.7+git20191031.4036a9c-2) ...
- Selecting previously unselected package gnuplot-data.
- Preparing to unpack .../1-gnuplot-data_5.4.2+dfsg2-2_all.deb ...
- Unpacking gnuplot-data (5.4.2+dfsg2-2) ...
- Selecting previously unselected package liblua5.4-0:amd64.
- Preparing to unpack .../2-liblua5.4-0_5.4.4-1_amd64.deb ...
- Unpacking liblua5.4-0:amd64 (5.4.4-1) ...
- Selecting previously unselected package libwxbase3.0-0v5:amd64.
- Preparing to unpack .../3-libwxbase3.0-0v5_3.0.5.1+dfsg-4_amd64.deb ...
- Unpacking libwxbase3.0-0v5:amd64 (3.0.5.1+dfsg-4) ...
- Selecting previously unselected package libnotify4:amd64.
- Preparing to unpack .../4-libnotify4_0.7.9-3ubuntu5.22.04.1_amd64.deb ...
- Unpacking libnotify4:amd64 (0.7.9-3ubuntu5.22.04.1) ...
- Selecting previously unselected package libwxgtk3.0-gtk3-0v5:amd64.
- Preparing to unpack .../5-libwxgtk3.0-gtk3-0v5_3.0.5.1+dfsg-4_amd64.deb ...
- Unpacking libwxgtk3.0-gtk3-0v5:amd64 (3.0.5.1+dfsg-4) ...
- Selecting previously unselected package gnuplot-x11.
- Preparing to unpack .../6-gnuplot-x11_5.4.2+dfsg2-2_amd64.deb ...
- Unpacking gnuplot-x11 (5.4.2+dfsg2-2) ...
- Setting up libnotify4:amd64 (0.7.9-3ubuntu5.22.04.1) ...
- Setting up aglfn (1.7+git20191031.4036a9c-2) ...
- Setting up liblua5.4-0:amd64 (5.4.4-1) ...
- Setting up libwxbase3.0-0v5:amd64 (3.0.5.1+dfsg-4) ...
- Setting up gnuplot-data (5.4.2+dfsg2-2) ...
- Setting up libwxgtk3.0-gtk3-0v5:amd64 (3.0.5.1+dfsg-4) ...
- Setting up gnuplot-x11 (5.4.2+dfsg2-2) ...
- update-alternatives: using /usr/bin/gnuplot-x11 to provide /usr/bin/gnuplot (gnuplot) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/gnuplot.1.gz because associated file /usr/share/man/man1/gnuplot-x11.1.gz (of link group gnuplot) doesn't exist
- Processing triggers for libc-bin (2.35-0ubuntu3.11) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed conf-gnuplot.0.1
-> retrieved cpm.12.2.0 (https://opam.ocaml.org/cache)
-> retrieved orrandomForest.3.0.0 (https://opam.ocaml.org/cache)
-> removed orrandomForest.3.0.0
-> removed cpm.12.2.0
-> installed cpm.12.2.0
-> installed orrandomForest.3.0.0
Done.
<><> orrandomForest.3.0.0 installed successfully ><><><><><><><><><><><><><><><>
=> Please interact with R to install needed things in user-space:
R
install.packages('Marix', repos='http://cran.r-project.org')
install.packages('randomForest', repos='http://cran.r-project.org')
# To update the current shell environment, run: eval $(opam env)
2025-11-10 12:47.19 ---> saved as "bacdbfee15ceccea7f77f44cd1320936aad39535b52f7015e00158572780215b"
/home/opam: (run (shell "opam reinstall --with-test --verbose orrandomForest.3.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"ubuntu-22.04\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'orrandomForest.3.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
The following actions will be performed:
=== recompile 1 package
- recompile orrandomForest 3.0.0 (pinned)
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/4: [orrandomForest.3.0.0: extract]
-> retrieved orrandomForest.3.0.0 (cached)
Processing 2/4: [orrandomForest: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "orrandomForest" "-j" "255" (CWD=/home/opam/.opam/4.14/.opam-switch/build/orrandomForest.3.0.0)
-> compiled orrandomForest.3.0.0
-> removed orrandomForest.3.0.0
-> installed orrandomForest.3.0.0
Done.
<><> orrandomForest.3.0.0 installed successfully ><><><><><><><><><><><><><><><>
=> Please interact with R to install needed things in user-space:
R
install.packages('Marix', repos='http://cran.r-project.org')
install.packages('randomForest', repos='http://cran.r-project.org')
# To update the current shell environment, run: eval $(opam env)
2025-11-10 12:47.24 ---> saved as "620e2e0e8b67e33fc4138406a242dcf3b4f51e0a20e96d36c14124a52941f0a1"
Job succeeded
2025-11-10 12:47.38: Job succeeded