(for PR #24267)
2025-11-10 11:02.16: New job: build odnnr.2.0.0, using opam dev
from https://github.com/ocaml/opam-repository.git#refs/pull/24267/head (41de505ec8ff3637ab3cb06a41ccbc29683f566c)
on ubuntu-25.04-ocaml-5.4/amd64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/24267/head" && git reset --hard 41de505e
git fetch origin master
git merge --no-edit 21f97b2e6d7c617fc0a79cc8e59b2e10690960e1
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:ubuntu-25.04-ocaml-5.4@sha256:117d8d80401eece679b2b42d0580c7231ba19f00d371da5e24bf136e45e6515d
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn odnnr.2.0.0 2.0.0
RUN opam reinstall odnnr.2.0.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"ubuntu-25.04\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'odnnr.2.0.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2025-11-10 11:02.16: Using cache hint "ocaml/opam:ubuntu-25.04-ocaml-5.4@sha256:117d8d80401eece679b2b42d0580c7231ba19f00d371da5e24bf136e45e6515d-odnnr.2.0.0-41de505ec8ff3637ab3cb06a41ccbc29683f566c"
2025-11-10 11:02.16: Using OBuilder spec:
((from ocaml/opam:ubuntu-25.04-ocaml-5.4@sha256:117d8d80401eece679b2b42d0580c7231ba19f00d371da5e24bf136e45e6515d)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "opam option solver=builtin-0install && opam config report"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn odnnr.2.0.0 2.0.0"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall odnnr.2.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"ubuntu-25.04\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'odnnr.2.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2025-11-10 11:02.16: Waiting for resource in pool OCluster
2025-11-10 12:29.29: Waiting for worker…
2025-11-10 12:34.14: Got resource from pool OCluster
Building on doris.caelum.ci.dev
All commits already cached
HEAD is now at 21f97b2e6d Merge pull request #28836 from dbuenzli/b0-publish-bytesrw.0.3.0
Merge made by the 'ort' strategy.
packages/odnnr/odnnr.2.0.0/opam | 4 +---
packages/oplsr/oplsr.8.0.1/opam | 3 +--
packages/orrandomForest/orrandomForest.1.0.0/opam | 5 +----
packages/orrandomForest/orrandomForest.2.0.1/opam | 7 +------
packages/orrandomForest/orrandomForest.3.0.0/opam | 7 +------
packages/orsvm_e1071/orsvm_e1071.2.0.0/opam | 3 ---
packages/orsvm_e1071/orsvm_e1071.3.0.0/opam | 5 +----
packages/orsvm_e1071/orsvm_e1071.3.0.1/opam | 2 +-
packages/orsvm_e1071/orsvm_e1071.3.0.2/opam | 2 +-
packages/orsvm_e1071/orsvm_e1071.4.0.0/opam | 2 +-
packages/orxgboost/orxgboost.1.0.1/opam | 5 +----
packages/orxgboost/orxgboost.1.1.0/opam | 5 +----
packages/orxgboost/orxgboost.1.2.0/opam | 5 +----
13 files changed, 12 insertions(+), 43 deletions(-)
(from ocaml/opam:ubuntu-25.04-ocaml-5.4@sha256:117d8d80401eece679b2b42d0580c7231ba19f00d371da5e24bf136e45e6515d)
Unable to find image 'ocaml/opam:ubuntu-25.04-ocaml-5.4@sha256:117d8d80401eece679b2b42d0580c7231ba19f00d371da5e24bf136e45e6515d' locally
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Digest: sha256:117d8d80401eece679b2b42d0580c7231ba19f00d371da5e24bf136e45e6515d
Status: Downloaded newer image for ocaml/opam@sha256:117d8d80401eece679b2b42d0580c7231ba19f00d371da5e24bf136e45e6515d
2025-11-10 12:35.08 ---> using "da00588125bcaf007281e764dbac2e2e2a043cceec831e625f9a2f227af7192a" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2025-11-10 12:35.08 ---> using "5da1ef1d2d196037c2a28a2279c6c13e6961d941062b30728e0c26a1b3215f7e" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Continue? [Y/n] y
[NOTE] The 'jobs' option was reset, its value was 71 and its new value will vary according to the current number of cores on your machine. You can restore the fixed value using:
opam option jobs=71 --global
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2025-11-10 12:35.08 ---> using "c3220dfb706f401b5828b4b0652547570243c359fd8489690ff2b5b4e0e3762a" from cache
/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version 2.5.0~alpha1
# self-upgrade no
# system arch=x86_64 os=linux os-distribution=ubuntu os-version=25.04
# solver builtin-0install
# install-criteria -changed,-count[avoid-version,solution]
# upgrade-criteria -count[avoid-version,solution]
# jobs 255
# repositories 1 (version-controlled)
# pinned 1 (version)
# current-switch 5.4
# invariant ["ocaml-base-compiler" {>= "5.4.0"}]
# compiler-packages ocaml-base-compiler.5.4.0, ocaml-compiler.5.4.0, ocaml-options-vanilla.1
# ocaml:native true
# ocaml:native-tools true
# ocaml:native-dynlink true
# ocaml:stubsdir /home/opam/.opam/5.4/lib/ocaml/stublibs:/home/opam/.opam/5.4/lib/ocaml
# ocaml:preinstalled false
# ocaml:compiler 5.4.0
2025-11-10 12:35.08 ---> using "70e18b58ddc5ddab24ea15aae8ab7a9bab9b164713b4664b439d5a4a43e6e1a9" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2025-11-10 12:35.08 ---> using "7e17bd963762fd6ef8baf24e49a7f1aa040d5189f769f046364ec0aa8f41f6a2" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2025-11-10 12:35.18 ---> saved as "9a47b9088bedf7a563fdbe1af120a10503986ad7fe20f84a58d8efa04aab20d9"
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2025-11-10 12:35.37 ---> saved as "0d3480fa2a0d24aa1216a05a4306d35d252b3c88b4fd9e742c3100d3636b713b"
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://security.ubuntu.com/ubuntu plucky-security InRelease [126 kB]
- Hit:2 http://archive.ubuntu.com/ubuntu plucky InRelease
- Get:3 http://archive.ubuntu.com/ubuntu plucky-updates InRelease [126 kB]
- Get:4 http://archive.ubuntu.com/ubuntu plucky-backports InRelease [126 kB]
- Fetched 378 kB in 2s (156 kB/s)
- Reading package lists...
-
2025-11-10 12:35.40 ---> saved as "0214ab63b033854ede149337f80a7760cd273c5255473e4aab54029ddd111c3d"
/home/opam: (run (shell "opam pin add -k version -yn odnnr.2.0.0 2.0.0"))
odnnr is now pinned to version 2.0.0
2025-11-10 12:35.42 ---> saved as "cb86d2f9dc953d96cfc2ed2befd94c37894e8326ba271330c0dfa768ee5e858b"
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall odnnr.2.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"ubuntu-25.04\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'odnnr.2.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
odnnr.2.0.0 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 14 packages
- install batteries 3.10.0 [required by odnnr]
- install camlp-streams 5.0.1 [required by batteries]
- install conf-autoconf 0.2 [required by cpu]
- install conf-gnuplot 0.1 [required by odnnr]
- install conf-r 1.0.0 [required by odnnr]
- install cpm 12.2.0 [required by odnnr]
- install cpu 2.0.0 [required by parany]
- install dolog 4.0.0 [required by odnnr]
- install dune 3.20.2 [required by odnnr]
- install minicli 5.0.2 [required by odnnr]
- install num 1.6 [required by batteries]
- install ocamlfind 1.9.8 [required by batteries]
- install odnnr 2.0.0 (pinned)
- install parany 12.2.2 [required by odnnr]
The following system packages will first need to be installed:
autoconf gnuplot-x11 r-base-core
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "gnuplot-x11" "r-base-core"
- Preconfiguring packages ...
- Selecting previously unselected package libpython3.13-minimal:amd64.
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- Preparing to unpack .../libpython3.13-minimal_3.13.3-1ubuntu0.3_amd64.deb ...
- Unpacking libpython3.13-minimal:amd64 (3.13.3-1ubuntu0.3) ...
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- Preparing to unpack .../python3.13-minimal_3.13.3-1ubuntu0.3_amd64.deb ...
- Unpacking python3.13-minimal (3.13.3-1ubuntu0.3) ...
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- Setting up libpkgconf3:amd64 (1.8.1-4) ...
- Setting up linux-sysctl-defaults (4.10.1ubuntu2) ...
- Setting up libgles2:amd64 (1.7.0-1build1) ...
- Setting up libdata-dump-perl (1.25-1) ...
- Setting up libepoxy0:amd64 (1.5.10-2) ...
- Setting up libxfixes3:amd64 (1:6.0.0-2build1) ...
- Setting up libxcb-sync1:amd64 (1.17.0-2) ...
- Setting up libipc-system-simple-perl (1.30-2) ...
- Setting up libxml-xpathengine-perl (0.14-2) ...
- Setting up aglfn (1.7+git20191031.4036a9c-2) ...
- Setting up libavahi-common-data:amd64 (0.8-16ubuntu2) ...
- Setting up libncurses6:amd64 (6.5+20250216-2) ...
- Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu1) ...
- Setting up libfribidi0:amd64 (1.0.16-1) ...
- Setting up libxinerama1:amd64 (2:1.1.4-3build1) ...
- Setting up libimagequant0:amd64 (2.18.0-1build1) ...
- Setting up libxv1:amd64 (2:1.0.11-1.1build1) ...
- Setting up fonts-dejavu-mono (2.37-8) ...
- Setting up libpng16-16t64:amd64 (1.6.47-1.1) ...
- Setting up systemd-timesyncd (257.4-1ubuntu3.2) ...
- Creating group 'systemd-timesync' with GID 997.
- Creating user 'systemd-timesync' (systemd Time Synchronization) with UID 997 and GID 997.
- Created symlink '/etc/systemd/system/dbus-org.freedesktop.timesync1.service' → '/usr/lib/systemd/system/systemd-timesyncd.service'.
- Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service' → '/usr/lib/systemd/system/systemd-timesyncd.service'.
- Setting up libio-html-perl (1.004-3) ...
- Setting up libxrandr2:amd64 (2:1.5.4-1) ...
- Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
- Setting up fonts-dejavu-core (2.37-8) ...
- Setting up ucf (3.0050) ...
- Setting up pkgconf-bin (1.8.1-4) ...
- Setting up gir1.2-glib-2.0:amd64 (2.84.1-1ubuntu0.1) ...
- Setting up libsensors5:amd64 (1:3.6.0-10) ...
- Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
- Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ...
- Setting up libvulkan1:amd64 (1.4.304.0-1) ...
- Setting up autoconf (2.72-3ubuntu1) ...
- Setting up libwebp7:amd64 (1.5.0-0.1) ...
- Setting up libtimedate-perl (2.3300-2) ...
- Setting up liblzma-dev:amd64 (5.6.4-1ubuntu1) ...
- Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
- Setting up libdevmapper1.02.1:amd64 (2:1.02.201-1ubuntu1) ...
- Setting up libpcre2-posix3:amd64 (10.45-1ubuntu0.1) ...
- Setting up dmsetup (2:1.02.201-1ubuntu1) ...
- Setting up libxshmfence1:amd64 (1.3-1build5) ...
- Setting up at-spi2-common (2.56.1-1) ...
- Setting up libxcb-randr0:amd64 (1.17.0-2) ...
- Setting up dbus-session-bus-common (1.16.2-2ubuntu1) ...
- Setting up liblua5.4-0:amd64 (5.4.7-1) ...
- Setting up libthai-data (0.1.29-2build1) ...
- Setting up libgirepository-1.0-1:amd64 (1.84.0-1) ...
- Setting up libwayland-egl1:amd64 (1.23.1-3) ...
- Setting up libxss1:amd64 (1:1.2.3-1build3) ...
- Setting up libicu76:amd64 (76.1-1ubuntu2) ...
- Setting up libxkbfile1:amd64 (1:1.1.0-1build4) ...
- Setting up libpaper2:amd64 (2.2.5-0.3) ...
- Setting up libwxbase3.2-1t64:amd64 (3.2.6+dfsg-2ubuntu1) ...
- Setting up dbus-system-bus-common (1.16.2-2ubuntu1) ...
- Creating group 'messagebus' with GID 996.
- Creating user 'messagebus' (System Message Bus) with UID 996 and GID 996.
- Setting up libde265-0:amd64 (1.0.15-1build5) ...
- Setting up libwebpmux3:amd64 (1.5.0-0.1) ...
- Setting up libdeflate-dev:amd64 (1.23-1) ...
- Setting up libdrm-common (2.4.124-2) ...
- Setting up libxcomposite1:amd64 (1:0.4.6-1) ...
- Setting up libpython3.13-stdlib:amd64 (3.13.3-1ubuntu0.3) ...
- Setting up libjson-c5:amd64 (0.18+ds-1) ...
- Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4ubuntu0.4) ...
- Setting up xdg-utils (1.2.1-2ubuntu1) ...
- update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/open.1.gz because associated file /usr/share/man/man1/xdg-open.1.gz (of link group open) doesn't exist
- Setting up liburi-perl (5.30-1) ...
- Setting up dbus-bin (1.16.2-2ubuntu1) ...
- Setting up libx11-protocol-perl (0.56-9) ...
- Setting up libblas-dev:amd64 (3.12.1-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
- Setting up libkmod2:amd64 (33+20240816-2ubuntu1) ...
- Setting up libpython3-stdlib:amd64 (3.13.3-1) ...
- Setting up libbz2-dev:amd64 (1.0.8-6) ...
- Setting up libxkbcommon0:amd64 (1.7.0-2) ...
- Setting up libwayland-client0:amd64 (1.23.1-3) ...
- Setting up libnet-ssleay-perl:amd64 (1.94-3) ...
- Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
- Setting up automake (1:1.17-3ubuntu1) ...
- update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/automake.1.gz because associated file /usr/share/man/man1/automake-1.17.1.gz (of link group automake) doesn't exist
- update-alternatives: warning: skip creation of /usr/share/man/man1/aclocal.1.gz because associated file /usr/share/man/man1/aclocal-1.17.1.gz (of link group automake) doesn't exist
- Setting up libgfortran-14-dev:amd64 (14.2.0-19ubuntu2) ...
- Setting up gnuplot-data (6.0.2+dfsg1-1ubuntu0.1) ...
- Setting up libice6:amd64 (2:1.1.1-1) ...
- Setting up libhttp-date-perl (6.06-1) ...
- Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ...
- Setting up liblapack3:amd64 (3.12.1-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libncurses-dev:amd64 (6.5+20250216-2) ...
- Setting up libfile-basedir-perl (0.09-2) ...
- Setting up libatk1.0-0t64:amd64 (2.56.1-1) ...
- Setting up libfile-listing-perl (6.16-1) ...
- Setting up libpcre2-dev:amd64 (10.45-1ubuntu0.1) ...
- Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ...
- Setting up libpng-tools (1.6.47-1.1) ...
- Setting up python3.13 (3.13.3-1ubuntu0.3) ...
- Setting up fontconfig-config (2.15.0-2.2ubuntu1) ...
- Setting up libxtst6:amd64 (2:1.2.5-1) ...
- Setting up libxcursor1:amd64 (1:1.2.3-1) ...
- Setting up libpng-dev:amd64 (1.6.47-1.1) ...
- Setting up libavahi-common3:amd64 (0.8-16ubuntu2) ...
- Setting up libnet-http-perl (6.23-1) ...
- Setting up python3 (3.13.3-1) ...
- running python rtupdate hooks for python3.13...
- running python post-rtupdate hooks for python3.13...
- Setting up dbus-daemon (1.16.2-2ubuntu1) ...
- Setting up libpaper-utils (2.2.5-0.3) ...
- Setting up libreadline-dev:amd64 (8.2-6) ...
- Setting up libcolord2:amd64 (1.4.7-3) ...
- Setting up gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
- Setting up pkgconf:amd64 (1.8.1-4) ...
- Setting up libdconf1:amd64 (0.40.0-5ubuntu0.1) ...
- Setting up libthai0:amd64 (0.1.29-2build1) ...
- Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ...
- Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
- Setting up gir1.2-girepository-2.0:amd64 (1.84.0-1) ...
- Setting up libatspi2.0-0t64:amd64 (2.56.1-1) ...
- Setting up dbus (1.16.2-2ubuntu1) ...
- Setting up python3-gi (3.50.0-4build1) ...
- Setting up shared-mime-info (2.4-5build1) ...
- Setting up liblapack-dev:amd64 (3.12.1-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- Setting up libllvm20:amd64 (1:20.1.2-0ubuntu1) ...
- Setting up icu-devtools (76.1-1ubuntu2) ...
- Setting up libfile-desktopentry-perl (0.22-3) ...
- Setting up libwww-robotrules-perl (6.02-1) ...
- Setting up libdrm2:amd64 (2.4.124-2) ...
- Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4.2) ...
- Setting up libwayland-cursor0:amd64 (1.23.1-3) ...
- Setting up libhtml-parser-perl:amd64 (3.83-1build1) ...
- Setting up libpam-systemd:amd64 (257.4-1ubuntu3.2) ...
- Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
- Setting up libcryptsetup12:amd64 (2:2.7.5-1ubuntu2) ...
- Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2ubuntu0.1) ...
- Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ...
- Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
- Setting up gfortran-14 (14.2.0-19ubuntu2) ...
- Setting up libsm6:amd64 (2:1.2.4-1) ...
- Setting up libicu-dev:amd64 (76.1-1ubuntu2) ...
- Setting up libavahi-client3:amd64 (0.8-16ubuntu2) ...
- Setting up libio-socket-ssl-perl (2.089-1) ...
- Setting up systemd-resolved (257.4-1ubuntu3.2) ...
- Converting /etc/resolv.conf to a symlink to /run/systemd/resolve/stub-resolv.conf...
- mv: cannot move '/etc/resolv.conf' to '/etc/.resolv.conf.systemd-resolved.bak': Device or resource busy
- Cannot take a backup of /etc/resolv.conf.
- ln: failed to create symbolic link '/etc/resolv.conf': Device or resource busy
- Cannot install symlink from /etc/resolv.conf to ../run/systemd/resolve/stub-resolv.conf
- Creating group 'systemd-resolve' with GID 995.
- Creating user 'systemd-resolve' (systemd Resolver) with UID 995 and GID 995.
- Created symlink '/etc/systemd/system/dbus-org.freedesktop.resolve1.service' → '/usr/lib/systemd/system/systemd-resolved.service'.
- Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-resolved.service' → '/usr/lib/systemd/system/systemd-resolved.service'.
- Setting up libhttp-message-perl (7.00-2ubuntu1) ...
- Setting up libdrm-amdgpu1:amd64 (2.4.124-2) ...
- Setting up libhtml-form-perl (6.12-1) ...
- Setting up libatk-bridge2.0-0t64:amd64 (2.56.1-1) ...
- Setting up mesa-vulkan-drivers:amd64 (25.0.7-0ubuntu0.25.04.2) ...
- Setting up libfile-mimeinfo-perl (0.35-1) ...
- Setting up gtk-update-icon-cache (4.18.5+ds-0ubuntu0.1) ...
- Setting up libhttp-negotiate-perl (6.01-2) ...
- Setting up fontconfig (2.15.0-2.2ubuntu1) ...
- Regenerating fonts cache...
- done.
- Setting up python3-dbus (1.3.2-5build5) ...
- Setting up libxft2:amd64 (2.3.6-1build1) ...
- Setting up libhttp-cookies-perl (6.11-1) ...
- Setting up libhtml-tree-perl (5.07-3) ...
- Setting up libtk8.6:amd64 (8.6.16-1) ...
- Setting up libpango-1.0-0:amd64 (1.56.3-1) ...
- Setting up libdrm-intel1:amd64 (2.4.124-2) ...
- Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
- Setting up libhtml-format-perl (2.16-2) ...
- Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
- Setting up gfortran (4:14.2.0-1ubuntu1) ...
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
- update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
- Setting up libcairo2:amd64 (1.18.4-1) ...
- Setting up dbus-user-session (1.16.2-2ubuntu1) ...
- Setting up libnet-smtp-ssl-perl (1.04-2) ...
- Setting up systemd-cryptsetup (257.4-1ubuntu3.2) ...
- Setting up adwaita-icon-theme (48.0-1) ...
- update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
- Setting up libmailtools-perl (2.22-1) ...
- Setting up libnotify4:amd64 (0.8.4-1) ...
- Setting up libraqm0:amd64 (0.10.2-1) ...
- Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
- Setting up libhttp-daemon-perl (6.16-1) ...
- Setting up libgdk-pixbuf2.0-bin (2.42.12+dfsg-2ubuntu0.1) ...
- Setting up libcairo-gobject2:amd64 (1.18.4-1) ...
- Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ...
- Setting up libcups2t64:amd64 (2.4.12-0ubuntu1.1) ...
- Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ...
- Setting up networkd-dispatcher (2.2.4-1.1) ...
- Created symlink '/etc/systemd/system/multi-user.target.wants/networkd-dispatcher.service' → '/usr/lib/systemd/system/networkd-dispatcher.service'.
- Setting up mesa-libgallium:amd64 (25.0.7-0ubuntu0.25.04.2) ...
- Setting up libxmu6:amd64 (2:1.1.3-3build2) ...
- Setting up libgbm1:amd64 (25.0.7-0ubuntu0.25.04.2) ...
- Setting up libgl1-mesa-dri:amd64 (25.0.7-0ubuntu0.25.04.2) ...
- Setting up dconf-service (0.40.0-5ubuntu0.1) ...
- Setting up libxaw7:amd64 (2:1.0.16-1) ...
- Setting up x11-xserver-utils (7.7+11) ...
- Setting up librsvg2-2:amd64 (2.60.0+dfsg-1) ...
- Setting up libegl-mesa0:amd64 (25.0.7-0ubuntu0.25.04.2) ...
- Setting up r-base-core (4.4.3-1) ...
- Creating config file /etc/R/Renviron with new version
- Setting up librsvg2-common:amd64 (2.60.0+dfsg-1) ...
- Setting up r-cran-lattice (0.22-6-1) ...
- Setting up r-cran-nlme (3.1.167-1) ...
- Setting up r-cran-cluster (2.1.8.1-1) ...
- Setting up libegl1:amd64 (1.7.0-1build1) ...
- Setting up r-cran-nnet (7.3-20-1) ...
- Setting up r-cran-codetools (0.2-20-1) ...
- Setting up r-cran-boot (1.3-31-1) ...
- Setting up libglx-mesa0:amd64 (25.0.7-0ubuntu0.25.04.2) ...
- Setting up r-base-dev (4.4.3-1) ...
- Setting up libglx0:amd64 (1.7.0-1build1) ...
- Setting up dconf-gsettings-backend:amd64 (0.40.0-5ubuntu0.1) ...
- Setting up r-cran-spatial (7.3-18-1) ...
- Setting up r-cran-mass (7.3-65-1) ...
- Setting up r-cran-foreign (0.8.88-1) ...
- Setting up libgl1:amd64 (1.7.0-1build1) ...
- Setting up r-cran-matrix (1.7-3-1) ...
- Setting up r-cran-kernsmooth (2.23-26-1) ...
- Setting up zutty (0.16.2.20241020+dfsg1-1) ...
- update-alternatives: using /usr/bin/zutty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/x-terminal-emulator.1.gz because associated file /usr/share/man/man1/zutty.1.gz (of link group x-terminal-emulator) doesn't exist
- Setting up r-cran-mgcv (1.9-1-1) ...
- Setting up x11-utils (7.7+7) ...
- Setting up libgtk-3-common (3.24.49-2ubuntu1) ...
- Setting up gsettings-desktop-schemas (48.0-1ubuntu1) ...
- Setting up r-cran-class (7.3-23-1) ...
- Setting up r-cran-survival (3.8-3-1) ...
- Setting up libgtk-3-0t64:amd64 (3.24.49-2ubuntu1) ...
- Setting up at-spi2-core (2.56.1-1) ...
- Setting up libwxgtk3.2-1t64:amd64 (3.2.6+dfsg-2ubuntu1) ...
- Setting up r-cran-rpart (4.1.24-1) ...
- Setting up libgtk-3-bin (3.24.49-2ubuntu1) ...
- Setting up r-recommended (4.4.3-1) ...
- Setting up libheif1:amd64 (1.19.7-1) ...
- Setting up libgd3:amd64 (2.3.3-12ubuntu3) ...
- Setting up gnuplot-x11 (6.0.2+dfsg1-1ubuntu0.1) ...
- update-alternatives: using /usr/bin/gnuplot-x11 to provide /usr/bin/gnuplot (gnuplot) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/gnuplot.1.gz because associated file /usr/share/man/man1/gnuplot-x11.1.gz (of link group gnuplot) doesn't exist
- Setting up libheif-plugin-aomdec:amd64 (1.19.7-1) ...
- Setting up liblwp-protocol-https-perl (6.14-1) ...
- Setting up libheif-plugin-libde265:amd64 (1.19.7-1) ...
- Setting up libwww-perl (6.78-1) ...
- Setting up libheif-plugin-aomenc:amd64 (1.19.7-1) ...
- Setting up libxml-parser-perl (2.47-1build4) ...
- Setting up libxml-twig-perl (1:3.52-3) ...
- Setting up libnet-dbus-perl (1.2.0-2build4) ...
- Processing triggers for systemd (257.4-1ubuntu3.2) ...
- Processing triggers for procps (2:4.0.4-7ubuntu1) ...
- grep: /proc/1/environ: Permission denied
- procps: Applying updated sysctl configuration
- sysctl: setting key "net.core.default_qdisc", ignoring: Read-only file system
- sysctl: setting key "kernel.printk", ignoring: Read-only file system
- sysctl: setting key "kernel.core_pattern", ignoring: Read-only file system
- sysctl: setting key "net.ipv6.conf.all.use_tempaddr", ignoring: Read-only file system
- sysctl: setting key "net.ipv6.conf.default.use_tempaddr", ignoring: Read-only file system
- sysctl: setting key "kernel.kptr_restrict", ignoring: Read-only file system
- sysctl: setting key "kernel.sysrq", ignoring: Read-only file system
- sysctl: setting key "vm.max_map_count", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.default.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.all.rp_filter", ignoring: Read-only file system
- sysctl: setting key "kernel.yama.ptrace_scope", ignoring: Read-only file system
- sysctl: setting key "vm.mmap_min_addr", ignoring: Read-only file system
- sysctl: setting key "kernel.unprivileged_userns_clone", ignoring: Read-only file system
- sysctl: setting key "kernel.sysrq", ignoring: Read-only file system
- sysctl: setting key "kernel.core_uses_pid", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.default.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.docker0.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno1.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno2.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno33np0.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno34np1.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.enp161s0f0.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.enp161s0f1.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.enp161s0f2.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.enp161s0f3.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.lo.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.default.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.docker0.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno1.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno2.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno33np0.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno34np1.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.enp161s0f0.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.enp161s0f1.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.enp161s0f2.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.enp161s0f3.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.lo.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.default.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.docker0.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno1.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno2.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno33np0.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno34np1.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.enp161s0f0.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.enp161s0f1.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.enp161s0f2.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.enp161s0f3.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.lo.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.ping_group_range", ignoring: Read-only file system
- sysctl: setting key "net.core.default_qdisc", ignoring: Read-only file system
- sysctl: setting key "fs.protected_hardlinks", ignoring: Read-only file system
- sysctl: setting key "fs.protected_symlinks", ignoring: Read-only file system
- sysctl: setting key "fs.protected_regular", ignoring: Read-only file system
- sysctl: setting key "fs.protected_fifos", ignoring: Read-only file system
- sysctl: setting key "kernel.pid_max", ignoring: Read-only file system
- Processing triggers for libc-bin (2.41-6ubuntu1.2) ...
- Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2ubuntu0.1) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved batteries.3.10.0 (cached)
-> retrieved camlp-streams.5.0.1 (cached)
-> retrieved conf-r.1.0.0 (cached)
-> retrieved cpm.12.2.0 (cached)
-> retrieved cpu.2.0.0 (cached)
-> retrieved dolog.4.0.0 (cached)
-> installed conf-gnuplot.0.1
-> installed conf-autoconf.0.2
-> installed conf-r.1.0.0
-> retrieved dune.3.20.2 (cached)
-> retrieved minicli.5.0.2 (cached)
-> retrieved num.1.6 (cached)
-> retrieved ocamlfind.1.9.8 (cached)
-> retrieved odnnr.2.0.0 (cached)
-> retrieved parany.12.2.2 (cached)
-> installed num.1.6
-> installed ocamlfind.1.9.8
-> installed dune.3.20.2
-> installed minicli.5.0.2
-> installed dolog.4.0.0
-> installed camlp-streams.5.0.1
-> installed cpu.2.0.0
-> installed parany.12.2.2
-> installed batteries.3.10.0
-> installed cpm.12.2.0
-> installed odnnr.2.0.0
Done.
<><> odnnr.2.0.0 installed successfully <><><><><><><><><><><><><><><><><><><><>
=> Please interact with R to install required dependencies in user-space:
R
install.packages('keras', repos='http://cran.r-project.org')
library(keras)
install_keras(method = 'conda', tensorflow = 'cpu')
# To update the current shell environment, run: eval $(opam env)
2025-11-10 12:36.45 ---> saved as "39a390ed05f248512c93a54d2ccb1cb5cf9c2e80217d6f960126f1577cbc364f"
Job succeeded
2025-11-10 12:37.02: Job succeeded