(for PR #23309)

2026-04-27 07:45.27: New job: build odnnr.2.0.3, using opam dev
                              from https://github.com/ocaml/opam-repository.git#refs/pull/23309/head (6b62b33f94fa0d7f64aa4da5cb0c75e78fa3b3ee)
                              on ubuntu-26.04-ocaml-5.4/amd64

To reproduce locally:

cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/23309/head" && git reset --hard 6b62b33f
git fetch origin master
git merge --no-edit d5058a91d400180e2118d7eeefa040cfcee45d2c
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:ubuntu-26.04-ocaml-5.4@sha256:23f9b6595fd2952b198a6391d29b6f92c0edcf528ec4c73ef7766b7810f23b93
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn odnnr.2.0.3 2.0.3
RUN opam reinstall odnnr.2.0.3; \
    res=$?; \
    test "$res" != 31 && exit "$res"; \
    export OPAMCLI=2.0; \
    build_dir=$(opam var prefix)/.opam-switch/build; \
    failed=$(ls "$build_dir"); \
    partial_fails=""; \
    for pkg in $failed; do \
    if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"ubuntu-26.04\""; then \
    echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
    fi; \
    test "$pkg" != 'odnnr.2.0.3' && partial_fails="$partial_fails $pkg"; \
    done; \
    test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
    exit 1

END-OF-DOCKERFILE
docker build -f ../Dockerfile .

2026-04-27 07:45.27: Using cache hint "ocaml/opam:ubuntu-26.04-ocaml-5.4@sha256:23f9b6595fd2952b198a6391d29b6f92c0edcf528ec4c73ef7766b7810f23b93-odnnr.2.0.3-6b62b33f94fa0d7f64aa4da5cb0c75e78fa3b3ee"
2026-04-27 07:45.27: Using OBuilder spec:
((from ocaml/opam:ubuntu-26.04-ocaml-5.4@sha256:23f9b6595fd2952b198a6391d29b6f92c0edcf528ec4c73ef7766b7810f23b93)
 (user (uid 1000) (gid 1000))
 (workdir /home/opam)
 (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
 (run (network host)
      (shell "opam init --reinit --config .opamrc-sandbox -ni"))
 (run (shell "opam option solver=builtin-0install && opam config report"))
 (env OPAMDOWNLOADJOBS 1)
 (env OPAMERRLOGLEN 0)
 (env OPAMPRECISETRACKING 1)
 (env CI true)
 (env OPAM_REPO_CI true)
 (run (shell "rm -rf opam-repository/"))
 (copy (src .) (dst opam-repository/))
 (run (shell "opam repository set-url --strict default opam-repository/"))
 (run (network host)
      (shell "opam update --depexts || true"))
 (run (shell "opam pin add -k version -yn odnnr.2.0.3 2.0.3"))
 (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
      (network host)
      (shell  "opam reinstall odnnr.2.0.3;\
             \n        res=$?;\
             \n        test \"$res\" != 31 && exit \"$res\";\
             \n        export OPAMCLI=2.0;\
             \n        build_dir=$(opam var prefix)/.opam-switch/build;\
             \n        failed=$(ls \"$build_dir\");\
             \n        partial_fails=\"\";\
             \n        for pkg in $failed; do\
             \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"ubuntu-26.04\\\"\"; then\
             \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
             \n          fi;\
             \n          test \"$pkg\" != 'odnnr.2.0.3' && partial_fails=\"$partial_fails $pkg\";\
             \n        done;\
             \n        test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
             \n        exit 1"))
)

2026-04-27 07:45.27: Connecting to build cluster…
2026-04-27 07:45.27: Waiting for resource in pool OCluster
2026-04-27 07:58.49: Waiting for worker…
2026-04-27 08:00.28: Got resource from pool OCluster
Building on odawa.caelum.ci.dev
All commits already cached
HEAD is now at d5058a91d4 Merge pull request #29801 from YuriyKrasilnikov/opam-publish-idna.0.4.0
Merge made by the 'ort' strategy.
 packages/odnnr/odnnr.2.0.3/files/install_keras.r |  8 +++++
 packages/odnnr/odnnr.2.0.3/opam                  | 46 ++++++++++++++++++++++++
 2 files changed, 54 insertions(+)
 create mode 100644 packages/odnnr/odnnr.2.0.3/files/install_keras.r
 create mode 100644 packages/odnnr/odnnr.2.0.3/opam

(from ocaml/opam:ubuntu-26.04-ocaml-5.4@sha256:23f9b6595fd2952b198a6391d29b6f92c0edcf528ec4c73ef7766b7810f23b93)
Unable to find image 'ocaml/opam:ubuntu-26.04-ocaml-5.4@sha256:23f9b6595fd2952b198a6391d29b6f92c0edcf528ec4c73ef7766b7810f23b93' locally
docker.io/ocaml/opam@sha256:23f9b6595fd2952b198a6391d29b6f92c0edcf528ec4c73ef7766b7810f23b93: Pulling from ocaml/opam
5f528443f346: Already exists
9d7db96ef8a1: Already exists
69cd0ed39c32: Already exists
8ddd605780bc: Already exists
b3563cf9c718: Already exists
0ff6404f2cf9: Already exists
0fd106322b2a: Already exists
6cfb66f33040: Already exists
b054a68819af: Already exists
935df48738cf: Already exists
6d7855f07084: Already exists
baf8b6b1404d: Already exists
d11a2bc559d8: Already exists
47b449369e16: Already exists
8821a6dafec4: Already exists
de6cbfe58b17: Already exists
4789d14f0dba: Already exists
dc40a97042b2: Already exists
5ba7a82e9924: Already exists
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1bd9b354e379: Already exists
d95538300577: Already exists
ccb31d3e72ef: Already exists
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2a4924aaac32: Already exists
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1a958ae6c150: Already exists
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7a4d6fbc7167: Already exists
d0314755e705: Already exists
9fe4679cfa16: Already exists
3da651ad3c12: Already exists
d706efa35e7e: Already exists
6e4c6034b693: Pulling fs layer
36d0bd387fb0: Pulling fs layer
d28a1a7cd77e: Pulling fs layer
95308d60d7f3: Pulling fs layer
26bd9639e4ee: Pulling fs layer
33968c9edaaf: Pulling fs layer
8b13cfd06b81: Pulling fs layer
95308d60d7f3: Waiting
26bd9639e4ee: Waiting
8b13cfd06b81: Waiting
33968c9edaaf: Waiting
36d0bd387fb0: Verifying Checksum
36d0bd387fb0: Download complete
6e4c6034b693: Verifying Checksum
6e4c6034b693: Download complete
d28a1a7cd77e: Download complete
6e4c6034b693: Pull complete
36d0bd387fb0: Pull complete
d28a1a7cd77e: Pull complete
26bd9639e4ee: Download complete
33968c9edaaf: Verifying Checksum
33968c9edaaf: Download complete
8b13cfd06b81: Download complete
95308d60d7f3: Verifying Checksum
95308d60d7f3: Download complete
95308d60d7f3: Pull complete
26bd9639e4ee: Pull complete
33968c9edaaf: Pull complete
8b13cfd06b81: Pull complete
Digest: sha256:23f9b6595fd2952b198a6391d29b6f92c0edcf528ec4c73ef7766b7810f23b93
Status: Downloaded newer image for ocaml/opam@sha256:23f9b6595fd2952b198a6391d29b6f92c0edcf528ec4c73ef7766b7810f23b93
2026-04-27 08:00.32 ---> using "adfe62a45dcf1f3d9a164e7f0368fcd193a49fd597399c1056161905cce9782f" from cache

/: (user (uid 1000) (gid 1000))

/: (workdir /home/opam)

/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2026-04-27 08:00.32 ---> using "843c3e370eb29e298d2bc36daff7f6e792e7da2551f6d2ff8c3da016f2738dd7" from cache

/home/opam: (run (network host)
                 (shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
  - you won't be able to use mercurial repositories unless you install the hg command on your system.
  - you won't be able to use darcs repositories unless you install the darcs command on your system.

This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.

Continue? [Y/n] y
[NOTE] The 'jobs' option was reset, its value was 71 and its new value will vary according to the current number of cores on your machine. You can restore the fixed value using:
           opam option jobs=71 --global
Format upgrade done.

<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2026-04-27 08:00.32 ---> using "16f7ac1b9630e6bc4de059844db39ee49ebf40749d9d61c8212d99f3c5c4ae4a" from cache

/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version         2.5.1
# self-upgrade         no
# system               arch=x86_64 os=linux os-distribution=ubuntu os-version=26.04
# solver               builtin-0install
# install-criteria     -changed,-count[avoid-version,solution]
# upgrade-criteria     -count[avoid-version,solution]
# jobs                 255
# repositories         1 (version-controlled)
# pinned               1 (version)
# current-switch       5.4
# invariant            ["ocaml-base-compiler" {= "5.4.1"}]
# compiler-packages    ocaml-base-compiler.5.4.1, ocaml-compiler.5.4.1, ocaml-options-vanilla.1
# ocaml:native         true
# ocaml:native-tools   true
# ocaml:native-dynlink true
# ocaml:stubsdir       /home/opam/.opam/5.4/lib/ocaml/stublibs:/home/opam/.opam/5.4/lib/ocaml
# ocaml:preinstalled   false
# ocaml:compiler       5.4.1
2026-04-27 08:00.32 ---> using "fd1a6a86fd08b62793e2a01d47f0f4e6592162e0b53889622a0e0aca6ab20c29" from cache

/home/opam: (env OPAMDOWNLOADJOBS 1)

/home/opam: (env OPAMERRLOGLEN 0)

/home/opam: (env OPAMPRECISETRACKING 1)

/home/opam: (env CI true)

/home/opam: (env OPAM_REPO_CI true)

/home/opam: (run (shell "rm -rf opam-repository/"))
2026-04-27 08:00.32 ---> using "225cc9a3c6189b93190408dae6903df36414d189171725b965a49e16c4f5f65a" from cache

/home/opam: (copy (src .) (dst opam-repository/))
2026-04-27 08:00.40 ---> saved as "b2d4ce58bca687d1a688b7956baca66f401c6f307f48a6fab5768e32dffe3e66"

/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2026-04-27 08:00.56 ---> saved as "5f2d6a237a6cf3a16e535640dc1af3cff4cbb7890d35af3272b61ca2dec74113"

/home/opam: (run (network host)
                 (shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://security.ubuntu.com/ubuntu resolute-security InRelease
- Hit:2 http://archive.ubuntu.com/ubuntu resolute InRelease
- Hit:3 http://archive.ubuntu.com/ubuntu resolute-updates InRelease
- Hit:4 http://archive.ubuntu.com/ubuntu resolute-backports InRelease
- Reading package lists...
- 
2026-04-27 08:00.58 ---> saved as "349132b9e14c0b509ce9ab8fc128633f861f64d38fa03840ad2b9b9c314e6eff"

/home/opam: (run (shell "opam pin add -k version -yn odnnr.2.0.3 2.0.3"))
odnnr is now pinned to version 2.0.3
2026-04-27 08:00.59 ---> saved as "e8340bb60d54c22fb5a6a44fbdb36901960536a27f3462c107f29248e82593f7"

/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
                 (network host)
                 (shell  "opam reinstall odnnr.2.0.3;\
                        \n        res=$?;\
                        \n        test \"$res\" != 31 && exit \"$res\";\
                        \n        export OPAMCLI=2.0;\
                        \n        build_dir=$(opam var prefix)/.opam-switch/build;\
                        \n        failed=$(ls \"$build_dir\");\
                        \n        partial_fails=\"\";\
                        \n        for pkg in $failed; do\
                        \n          if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"ubuntu-26.04\\\"\"; then\
                        \n            echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
                        \n          fi;\
                        \n          test \"$pkg\" != 'odnnr.2.0.3' && partial_fails=\"$partial_fails $pkg\";\
                        \n        done;\
                        \n        test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
                        \n        exit 1"))
odnnr.2.0.3 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 14 packages
  - install batteries     3.10.0         [required by odnnr]
  - install camlp-streams 5.0.1          [required by batteries]
  - install conf-autoconf 0.2            [required by cpu]
  - install conf-gnuplot  0.1            [required by odnnr]
  - install conf-r        1.0.0          [required by odnnr]
  - install cpm           12.2.0         [required by odnnr]
  - install cpu           2.0.0          [required by parany]
  - install dolog         6.0.0          [required by odnnr]
  - install dune          3.22.2         [required by odnnr]
  - install minicli       5.0.2          [required by odnnr]
  - install num           1.6            [required by batteries]
  - install ocamlfind     1.9.8          [required by batteries]
  - install odnnr         2.0.3 (pinned)
  - install parany        14.0.1         [required by odnnr]

The following system packages will first need to be installed:
    autoconf gnuplot-x11 r-base-core

<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>

opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
  2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
  3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
  4. Abort the installation

[1/2/3/4] 1

+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "gnuplot-x11" "r-base-core"
- Preconfiguring packages ...
- Selecting previously unselected package libsystemd-shared:amd64.
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- Preparing to unpack .../libsystemd-shared_259.5-0ubuntu3_amd64.deb ...
- Unpacking libsystemd-shared:amd64 (259.5-0ubuntu3) ...
- Setting up libsystemd-shared:amd64 (259.5-0ubuntu3) ...
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- Preparing to unpack .../systemd_259.5-0ubuntu3_amd64.deb ...
- Unpacking systemd (259.5-0ubuntu3) ...
- Setting up systemd (259.5-0ubuntu3) ...
- Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' → '/usr/lib/systemd/system/getty@.service'.

- Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' → '/usr/lib/systemd/system/remote-fs.target'.

- Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' → '/usr/lib/systemd/system/systemd-pstore.service'.

- Initializing machine ID from random generator.

- /usr/lib/tmpfiles.d/systemd-network.conf:10: Failed to resolve user 'systemd-network': Unknown user

- /usr/lib/tmpfiles.d/systemd-network.conf:11: Failed to resolve user 'systemd-network': Unknown user

- /usr/lib/tmpfiles.d/systemd-network.conf:12: Failed to resolve user 'systemd-network': Unknown user

- /usr/lib/tmpfiles.d/systemd-network.conf:13: Failed to resolve user 'systemd-network': Unknown user

- /usr/lib/tmpfiles.d/systemd.conf:21: Failed to resolve group 'systemd-journal': Unknown group

- /usr/lib/tmpfiles.d/systemd.conf:22: Failed to resolve group 'systemd-journal': Unknown group

- /usr/lib/tmpfiles.d/systemd.conf:26: Failed to resolve group 'systemd-journal': Unknown group

- /usr/lib/tmpfiles.d/systemd.conf:27: Failed to resolve group 'systemd-journal': Unknown group

- /usr/lib/tmpfiles.d/systemd.conf:28: Failed to resolve group 'systemd-journal': Unknown group

- Creating group 'systemd-journal' with GID 999.

- Creating group 'systemd-network' with GID 998.

- Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998.

- Selecting previously unselected package systemd-sysv.
- (Reading database ... 
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(Reading database ... 23803 files and directories currently installed.)
- Preparing to unpack .../000-systemd-sysv_259.5-0ubuntu3_amd64.deb ...
- Unpacking systemd-sysv (259.5-0ubuntu3) ...
- Selecting previously unselected package libdbus-1-3:amd64.
- Preparing to unpack .../001-libdbus-1-3_1.16.2-2ubuntu4_amd64.deb ...
- Unpacking libdbus-1-3:amd64 (1.16.2-2ubuntu4) ...
- Selecting previously unselected package dbus-bin.
- Preparing to unpack .../002-dbus-bin_1.16.2-2ubuntu4_amd64.deb ...
- Unpacking dbus-bin (1.16.2-2ubuntu4) ...
- Selecting previously unselected package dbus-session-bus-common.
- Preparing to unpack .../003-dbus-session-bus-common_1.16.2-2ubuntu4_all.deb ...
- Unpacking dbus-session-bus-common (1.16.2-2ubuntu4) ...
- Selecting previously unselected package dbus-daemon.
- Preparing to unpack .../004-dbus-daemon_1.16.2-2ubuntu4_amd64.deb ...
- Unpacking dbus-daemon (1.16.2-2ubuntu4) ...
- Selecting previously unselected package dbus-system-bus-common.
- Preparing to unpack .../005-dbus-system-bus-common_1.16.2-2ubuntu4_all.deb ...
- Unpacking dbus-system-bus-common (1.16.2-2ubuntu4) ...
- Selecting previously unselected package dbus.
- Preparing to unpack .../006-dbus_1.16.2-2ubuntu4_amd64.deb ...
- Unpacking dbus (1.16.2-2ubuntu4) ...
- Selecting previously unselected package libpam-systemd:amd64.
- Preparing to unpack .../007-libpam-systemd_259.5-0ubuntu3_amd64.deb ...
- Unpacking libpam-systemd:amd64 (259.5-0ubuntu3) ...
- Selecting previously unselected package dbus-user-session.
- Preparing to unpack .../008-dbus-user-session_1.16.2-2ubuntu4_amd64.deb ...
- Unpacking dbus-user-session (1.16.2-2ubuntu4) ...
- Selecting previously unselected package libdevmapper1.02.1:amd64.
- Preparing to unpack .../009-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ...
- Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
- Selecting previously unselected package dmsetup.
- Preparing to unpack .../010-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ...
- Unpacking dmsetup (2:1.02.205-2ubuntu3) ...
- Selecting previously unselected package libjson-c5:amd64.
- Preparing to unpack .../011-libjson-c5_0.18+ds-3_amd64.deb ...
- Unpacking libjson-c5:amd64 (0.18+ds-3) ...
- Selecting previously unselected package libcryptsetup12:amd64.
- Preparing to unpack .../012-libcryptsetup12_2%3a2.8.4-1ubuntu4_amd64.deb ...
- Unpacking libcryptsetup12:amd64 (2:2.8.4-1ubuntu4) ...
- Selecting previously unselected package libelf1t64:amd64.
- Preparing to unpack .../013-libelf1t64_0.194-4_amd64.deb ...
- Unpacking libelf1t64:amd64 (0.194-4) ...
- Selecting previously unselected package libfribidi0:amd64.
- Preparing to unpack .../014-libfribidi0_1.0.16-5_amd64.deb ...
- Unpacking libfribidi0:amd64 (1.0.16-5) ...
- Selecting previously unselected package libglib2.0-0t64:amd64.
- Preparing to unpack .../015-libglib2.0-0t64_2.88.0-1_amd64.deb ...
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- Unpacking libxkbfile1:amd64 (1:1.1.0-1build5) ...
- Selecting previously unselected package libxml-xpathengine-perl.
- Preparing to unpack .../232-libxml-xpathengine-perl_0.14-2_all.deb ...
- Unpacking libxml-xpathengine-perl (0.14-2) ...
- Selecting previously unselected package libxv1:amd64.
- Preparing to unpack .../233-libxv1_2%3a1.0.13-1_amd64.deb ...
- Unpacking libxv1:amd64 (2:1.0.13-1) ...
- Selecting previously unselected package libxxf86dga1:amd64.
- Preparing to unpack .../234-libxxf86dga1_2%3a1.1.5-1build2_amd64.deb ...
- Unpacking libxxf86dga1:amd64 (2:1.1.5-1build2) ...
- Selecting previously unselected package luit.
- Preparing to unpack .../235-luit_2.0.20250912-1_amd64.deb ...
- Adding 'diversion of /usr/bin/luit to /usr/bin/luit.x11-utils by luit'
- Adding 'diversion of /usr/share/man/man1/luit.1.gz to /usr/share/man/man1/luit.x11-utils.1.gz by luit'
- Unpacking luit (2.0.20250912-1) ...
- Selecting previously unselected package mesa-vulkan-drivers:amd64.
- Preparing to unpack .../236-mesa-vulkan-drivers_26.0.3-1ubuntu1_amd64.deb ...
- Unpacking mesa-vulkan-drivers:amd64 (26.0.3-1ubuntu1) ...
- Selecting previously unselected package zip.
- Preparing to unpack .../237-zip_3.0-15ubuntu3_amd64.deb ...
- Unpacking zip (3.0-15ubuntu3) ...
- Selecting previously unselected package xdg-utils.
- Preparing to unpack .../238-xdg-utils_1.2.1-2ubuntu2_all.deb ...
- Unpacking xdg-utils (1.2.1-2ubuntu2) ...
- Selecting previously unselected package r-base-core.
- Preparing to unpack .../239-r-base-core_4.5.2-1ubuntu2_amd64.deb ...
- Unpacking r-base-core (4.5.2-1ubuntu2) ...
- Selecting previously unselected package r-cran-boot.
- Preparing to unpack .../240-r-cran-boot_1.3-32-1_all.deb ...
- Unpacking r-cran-boot (1.3-32-1) ...
- Selecting previously unselected package r-cran-mass.
- Preparing to unpack .../241-r-cran-mass_7.3-65-1_amd64.deb ...
- Unpacking r-cran-mass (7.3-65-1) ...
- Selecting previously unselected package r-cran-class.
- Preparing to unpack .../242-r-cran-class_7.3-23-1_amd64.deb ...
- Unpacking r-cran-class (7.3-23-1) ...
- Selecting previously unselected package r-cran-cluster.
- Preparing to unpack .../243-r-cran-cluster_2.1.8.2-1_amd64.deb ...
- Unpacking r-cran-cluster (2.1.8.2-1) ...
- Selecting previously unselected package r-cran-codetools.
- Preparing to unpack .../244-r-cran-codetools_0.2-20-1build1_all.deb ...
- Unpacking r-cran-codetools (0.2-20-1build1) ...
- Selecting previously unselected package r-cran-foreign.
- Preparing to unpack .../245-r-cran-foreign_0.8.91-1_amd64.deb ...
- Unpacking r-cran-foreign (0.8.91-1) ...
- Selecting previously unselected package r-cran-kernsmooth.
- Preparing to unpack .../246-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ...
- Unpacking r-cran-kernsmooth (2.23-26-1build1) ...
- Selecting previously unselected package r-cran-lattice.
- Preparing to unpack .../247-r-cran-lattice_0.22-9-1_amd64.deb ...
- Unpacking r-cran-lattice (0.22-9-1) ...
- Selecting previously unselected package r-cran-matrix.
- Preparing to unpack .../248-r-cran-matrix_1.7-4-1_amd64.deb ...
- Unpacking r-cran-matrix (1.7-4-1) ...
- Selecting previously unselected package r-cran-nlme.
- Preparing to unpack .../249-r-cran-nlme_3.1.168-1build1_amd64.deb ...
- Unpacking r-cran-nlme (3.1.168-1build1) ...
- Selecting previously unselected package r-cran-mgcv.
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- Unpacking r-cran-mgcv (1.9-4-1) ...
- Selecting previously unselected package r-cran-nnet.
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- Unpacking r-cran-nnet (7.3-20-1) ...
- Selecting previously unselected package r-cran-survival.
- Preparing to unpack .../252-r-cran-survival_3.8-6-1_amd64.deb ...
- Unpacking r-cran-survival (3.8-6-1) ...
- Selecting previously unselected package r-cran-rpart.
- Preparing to unpack .../253-r-cran-rpart_4.1.24-1build1_amd64.deb ...
- Unpacking r-cran-rpart (4.1.24-1build1) ...
- Selecting previously unselected package r-cran-spatial.
- Preparing to unpack .../254-r-cran-spatial_7.3-18-1_amd64.deb ...
- Unpacking r-cran-spatial (7.3-18-1) ...
- Selecting previously unselected package r-doc-html.
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- Unpacking r-doc-html (4.5.2-1ubuntu2) ...
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- Selecting previously unselected package systemd-timesyncd.
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- Unpacking systemd-timesyncd (259.5-0ubuntu3) ...
- Selecting previously unselected package libglvnd0:amd64.
- Preparing to unpack .../258-libglvnd0_1.7.0-3_amd64.deb ...
- Unpacking libglvnd0:amd64 (1.7.0-3) ...
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- Preparing to unpack .../259-libglx0_1.7.0-3_amd64.deb ...
- Unpacking libglx0:amd64 (1.7.0-3) ...
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- Preparing to unpack .../260-libgl1_1.7.0-3_amd64.deb ...
- Unpacking libgl1:amd64 (1.7.0-3) ...
- Selecting previously unselected package x11-utils.
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- Unpacking x11-utils (7.7+7build1) ...
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- Unpacking x11-xserver-utils (7.7+11build1) ...
- Selecting previously unselected package libauthen-sasl-perl.
- Preparing to unpack .../263-libauthen-sasl-perl_2.2000-1_all.deb ...
- Unpacking libauthen-sasl-perl (2.2000-1) ...
- Setting up libhwy1t64:amd64 (1.3.0-2) ...
- Setting up libtext-iconv-perl:amd64 (1.7-8.1) ...
- Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
- Setting up libxcb-dri3-0:amd64 (1.17.0-2ubuntu1) ...
- Setting up liblcms2-2:amd64 (2.17-1) ...
- Setting up libpixman-1-0:amd64 (0.46.4-1) ...
- Setting up libtext-charwidth-perl:amd64 (0.04-11build4) ...
- Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ...
- Setting up libaom3:amd64 (3.13.1-2) ...
- Setting up libx11-xcb1:amd64 (2:1.8.13-1) ...
- Setting up libpciaccess0:amd64 (0.18.1-1ubuntu4) ...
- Setting up luit (2.0.20250912-1) ...
- Setting up systemd-sysv (259.5-0ubuntu3) ...
- Setting up libtie-ixhash-perl (1.23-4) ...
- Setting up libxdamage1:amd64 (1:1.1.7-1) ...
- Setting up libxcb-xfixes0:amd64 (1.17.0-2ubuntu1) ...
- Setting up libogg0:amd64 (1.3.6-2) ...
- Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ...
- Setting up libxpm4:amd64 (1:3.5.17-1build3) ...
- Setting up r-doc-html (4.5.2-1ubuntu2) ...
- Setting up hicolor-icon-theme (0.18-2build1) ...
- Setting up libxi6:amd64 (2:1.8.2-2) ...
- Setting up libfont-afm-perl (1.20-4) ...
- Setting up libxrender1:amd64 (1:0.9.12-1build1) ...
- Setting up libdatrie1:amd64 (0.2.14-1) ...
- Setting up xdg-user-dirs (0.19-1) ...
- Created symlink '/etc/systemd/user/graphical-session-pre.target.wants/xdg-user-dirs.service' → '/usr/lib/systemd/user/xdg-user-dirs.service'.

- Setting up libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
- Setting up libclone-perl:amd64 (0.47-1) ...
- Setting up libglvnd0:amd64 (1.7.0-3) ...
- Setting up libxml2-16:amd64 (2.15.2+dfsg-0.1) ...
- Setting up libio-stringy-perl (2.113-2) ...
- Setting up libdisplay-info3:amd64 (0.3.0-1) ...
- Setting up libtirpc-common (1.3.7-0.1) ...
- Setting up libhtml-tagset-perl (3.24-1) ...
- Setting up libxcb-glx0:amd64 (1.17.0-2ubuntu1) ...
- Setting up liblwp-mediatypes-perl (6.04-2) ...
- Setting up libgdk-pixbuf2.0-common (2.44.5+dfsg-4ubuntu1) ...
- Setting up libcrypt-urandom-perl (0.55-1) ...
- Setting up libxcb-shape0:amd64 (1.17.0-2ubuntu1) ...
- Setting up x11-common (1:7.7+26ubuntu1) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of start.
- Setting up libtry-tiny-perl (0.32-1) ...
- Setting up libsensors-config (1:3.6.2-2build1) ...
- Setting up libxxf86dga1:amd64 (2:1.1.5-1build2) ...
- Setting up libdeflate0:amd64 (1.23-2ubuntu1) ...
- Setting up perl-openssl-defaults:amd64 (7build4) ...
- Setting up m4 (1.4.21-1) ...
- Setting up libnss-systemd:amd64 (259.5-0ubuntu3) ...
- Setting up xkb-data (2.46-2) ...
- Setting up libencode-locale-perl (1.05-3) ...
- Setting up libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
- Setting up libmpg123-0t64:amd64 (1.33.3-2) ...
- Setting up libtext-wrapi18n-perl (0.06-10) ...
- Setting up libjbig0:amd64 (2.1-6.1ubuntu3) ...
- Setting up libelf1t64:amd64 (0.194-4) ...
- Setting up libxxf86vm1:amd64 (1:1.1.4-2) ...
- Setting up libxcb-xkb1:amd64 (1.17.0-2ubuntu1) ...
- Setting up libicu78:amd64 (78.2-2ubuntu1) ...
- Setting up libxcb-present0:amd64 (1.17.0-2ubuntu1) ...
- Setting up libasound2-data (1.2.15.3-1ubuntu1) ...
- Setting up zip (3.0-15ubuntu3) ...
- Setting up autotools-dev (20240727.1build1) ...
- Setting up libpcre2-32-0:amd64 (10.46-1build1) ...
- Setting up libglib2.0-0t64:amd64 (2.88.0-1) ...
- Setting up libblas3:amd64 (3.12.1-7ubuntu1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libglib2.0-data (2.88.0-1) ...
- Setting up linux-sysctl-defaults (4.15ubuntu5) ...
- Setting up libasound2t64:amd64 (1.2.15.3-1ubuntu1) ...
- Setting up libdata-dump-perl (1.25-1) ...
- Setting up libepoxy0:amd64 (1.5.10-2build1) ...
- Setting up libxfixes3:amd64 (1:6.0.0-2build2) ...
- Setting up libxcb-sync1:amd64 (1.17.0-2ubuntu1) ...
- Setting up libipc-system-simple-perl (1.30-2) ...
- Setting up libxml-xpathengine-perl (0.14-2) ...
- Setting up libllvm21:amd64 (1:21.1.8-6ubuntu1) ...
- Setting up aglfn (1.7+git20191031.4036a9c-2build1) ...
- Setting up libavahi-common-data:amd64 (0.8-18ubuntu1) ...
- Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu4) ...
- Setting up libfribidi0:amd64 (1.0.16-5) ...
- Setting up libopus0:amd64 (1.6.1-1) ...
- Setting up shared-mime-info (2.4-5build3) ...
- Setting up libxinerama1:amd64 (2:1.1.4-3build2) ...
- Setting up libimagequant0:amd64 (4.4.1-1) ...
- Setting up libxv1:amd64 (2:1.0.13-1) ...
- Setting up fonts-dejavu-mono (2.37-8build1) ...
- Setting up libpng16-16t64:amd64 (1.6.57-1) ...
- Setting up systemd-timesyncd (259.5-0ubuntu3) ...
- Creating group 'systemd-timesync' with GID 997.

- Creating user 'systemd-timesync' (systemd Time Synchronization) with UID 997 and GID 997.

- Created symlink '/etc/systemd/system/dbus-org.freedesktop.timesync1.service' → '/usr/lib/systemd/system/systemd-timesyncd.service'.

- Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service' → '/usr/lib/systemd/system/systemd-timesyncd.service'.

- Setting up libvorbis0a:amd64 (1.3.7-3build2) ...
- Setting up libio-html-perl (1.004-3) ...
- Setting up libxrandr2:amd64 (2:1.5.4-1build1) ...
- Setting up libtcl8.6:amd64 (8.6.17+dfsg-1build1) ...
- Setting up fonts-dejavu-core (2.37-8build1) ...
- Setting up libflac14:amd64 (1.5.0+ds-5) ...
- Setting up ucf (3.0052ubuntu1) ...
- Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
- Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu4) ...
- Setting up libgfortran5:amd64 (16-20260322-1ubuntu1) ...
- Setting up libvulkan1:amd64 (1.4.341.0-1) ...
- Setting up autoconf (2.72-3.1ubuntu2) ...
- Setting up libwebp7:amd64 (1.5.0-0.1build1) ...
- Setting up libtimedate-perl (2.3300-2) ...
- Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
- Setting up alsa-topology-conf (1.2.5.1-3build1) ...
- Setting up dmsetup (2:1.02.205-2ubuntu3) ...
- Setting up libasyncns0:amd64 (0.8-7) ...
- Setting up libxshmfence1:amd64 (1.3.3-1build1) ...
- Setting up at-spi2-common (2.60.0-1) ...
- Setting up libxcb-randr0:amd64 (1.17.0-2ubuntu1) ...
- Setting up dbus-session-bus-common (1.16.2-2ubuntu4) ...
- Setting up liblua5.4-0:amd64 (5.4.8-1build1) ...
- Setting up libthai-data (0.1.30-1) ...
- Setting up libwayland-egl1:amd64 (1.24.0-2) ...
- Setting up libxss1:amd64 (1:1.2.3-1build4) ...
- Setting up libxkbfile1:amd64 (1:1.1.0-1build5) ...
- Setting up libpaper2:amd64 (2.2.5-0.3maysync1) ...
- Setting up libwxbase3.2-1t64:amd64 (3.2.9+dfsg-1) ...
- Setting up dbus-system-bus-common (1.16.2-2ubuntu4) ...
- Creating group 'messagebus' with GID 996.

- Creating user 'messagebus' (System Message Bus) with UID 996 and GID 996.

- Setting up libsamplerate0:amd64 (0.2.2-4build2) ...
- Setting up libwebpmux3:amd64 (1.5.0-0.1build1) ...
- Setting up libdrm-common (2.4.131-1) ...
- Setting up libxcomposite1:amd64 (1:0.4.6-1build1) ...
- Setting up libjxl0.11:amd64 (0.11.1-6ubuntu4) ...
- Setting up libjson-c5:amd64 (0.18+ds-3) ...
- Setting up xdg-utils (1.2.1-2ubuntu2) ...
- update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/open.1.gz because associated file /usr/share/man/man1/xdg-open.1.gz (of link group open) does not exist
- Setting up liburi-perl (5.34-2build1) ...
- Setting up dbus-bin (1.16.2-2ubuntu4) ...
- Setting up libx11-protocol-perl (0.56-9) ...
- Setting up libmp3lame0:amd64 (3.101~svn6525+dfsg-2) ...
- Setting up libvorbisenc2:amd64 (1.3.7-3build2) ...
- Setting up libkmod2:amd64 (34.2-2ubuntu2) ...
- Setting up libxres1:amd64 (2:1.2.1-1build2) ...
- Setting up ncurses-term (6.6+20251231-1) ...
- Setting up libxkbcommon0:amd64 (1.13.1-1) ...
- Setting up libwayland-client0:amd64 (1.24.0-2) ...
- Setting up libnet-ssleay-perl:amd64 (1.94-3) ...
- Setting up libjpeg8:amd64 (8c-2ubuntu12) ...
- Setting up automake (1:1.18.1-3build1) ...
- update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/automake.1.gz because associated file /usr/share/man/man1/automake-1.18.1.gz (of link group automake) does not exist
- update-alternatives: warning: skip creation of /usr/share/man/man1/aclocal.1.gz because associated file /usr/share/man/man1/aclocal-1.18.1.gz (of link group automake) does not exist
- Setting up gnuplot-data (6.0.2+dfsg1-2ubuntu2) ...
- Setting up libice6:amd64 (2:1.1.1-1build1) ...
- Setting up libhttp-date-perl (6.06-1) ...
- Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libfile-basedir-perl (0.09-2) ...
- Setting up libatk1.0-0t64:amd64 (2.60.0-1) ...
- Setting up libfile-listing-perl (6.16-1) ...
- Setting up user-session-migration (0.5.1) ...
- Created symlink '/etc/systemd/user/graphical-session-pre.target.wants/user-session-migration.service' → '/usr/lib/systemd/user/user-session-migration.service'.

- Setting up libtirpc3t64:amd64 (1.3.7-0.1) ...
- Setting up alsa-ucm-conf (1.2.15.3-1ubuntu1) ...
- Setting up fontconfig-config (2.17.1-3ubuntu1) ...
- Setting up libxtst6:amd64 (2:1.2.5-1build1) ...
- Setting up libauthen-sasl-perl (2.2000-1) ...
- Setting up libxcursor1:amd64 (1:1.2.3-1build1) ...
- Setting up libibus-1.0-5:amd64 (1.5.34~rc2-1) ...
- Setting up libavahi-common3:amd64 (0.8-18ubuntu1) ...
- Setting up libnet-http-perl (6.24-1build1) ...
- Setting up dbus-daemon (1.16.2-2ubuntu4) ...
- Setting up libpaper-utils (2.2.5-0.3maysync1) ...
- Setting up libcolord2:amd64 (1.4.8-3) ...
- Setting up libdconf1:amd64 (0.49.0-4) ...
- Setting up libthai0:amd64 (0.1.30-1) ...
- Setting up libfreetype6:amd64 (2.14.2+dfsg-1) ...
- Setting up libatspi2.0-0t64:amd64 (2.60.0-1) ...
- Setting up dbus (1.16.2-2ubuntu4) ...
- Setting up libxkbcommon-x11-0:amd64 (1.13.1-1) ...
- Setting up libfile-desktopentry-perl (0.23-1) ...
- Setting up libwww-robotrules-perl (6.02-1build1) ...
- Setting up libdrm2:amd64 (2.4.131-1) ...
- Setting up libtiff6:amd64 (4.7.0-3ubuntu4) ...
- Setting up libwayland-cursor0:amd64 (1.24.0-2) ...
- Setting up libhtml-parser-perl:amd64 (3.83-1build1) ...
- Setting up libpam-systemd:amd64 (259.5-0ubuntu3) ...
- Setting up libdecor-0-0:amd64 (0.2.5-1) ...
- Setting up libharfbuzz0b:amd64 (12.3.2-2) ...
- Setting up libcryptsetup12:amd64 (2:2.8.4-1ubuntu4) ...
- Setting up libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
- Setting up libsndfile1:amd64 (1.2.2-4) ...
- Setting up libsm6:amd64 (2:1.2.6-1build1) ...
- Setting up libavahi-client3:amd64 (0.8-18ubuntu1) ...
- Setting up libio-socket-ssl-perl (2.098-1) ...
- Setting up systemd-resolved (259.5-0ubuntu3) ...
- Converting /etc/resolv.conf to a symlink to /run/systemd/resolve/stub-resolv.conf...
- mv: cannot move '/etc/resolv.conf' to '/etc/.resolv.conf.systemd-resolved.bak': Device or resource busy
- Cannot take a backup of /etc/resolv.conf.
- ln: failed to create symbolic link '/etc/resolv.conf': Device or resource busy
- Cannot install symlink from /etc/resolv.conf to ../run/systemd/resolve/stub-resolv.conf
- Creating group 'systemd-resolve' with GID 995.

- Creating user 'systemd-resolve' (systemd Resolver) with UID 995 and GID 995.

- Created symlink '/etc/systemd/system/dbus-org.freedesktop.resolve1.service' → '/usr/lib/systemd/system/systemd-resolved.service'.

- Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-resolved.service' → '/usr/lib/systemd/system/systemd-resolved.service'.

- Created symlink '/etc/systemd/system/sockets.target.wants/systemd-resolved-varlink.socket' → '/usr/lib/systemd/system/systemd-resolved-varlink.socket'.

- Created symlink '/etc/systemd/system/sockets.target.wants/systemd-resolved-monitor.socket' → '/usr/lib/systemd/system/systemd-resolved-monitor.socket'.

- Setting up libhttp-message-perl (7.01-1ubuntu1) ...
- Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
- Setting up libhtml-form-perl (6.13-1build1) ...
- Setting up libatk-bridge2.0-0t64:amd64 (2.60.0-1) ...
- Setting up mesa-vulkan-drivers:amd64 (26.0.3-1ubuntu1) ...
- Setting up libfile-mimeinfo-perl (0.36-2) ...
- Setting up libhttp-negotiate-perl (6.01-2) ...
- Setting up fontconfig (2.17.1-3ubuntu1) ...
- Regenerating fonts cache... 
- done.
- Setting up libxft2:amd64 (2.3.6-1build2) ...
- Setting up libhttp-cookies-perl (6.11-1) ...
- Setting up libpulse0:amd64 (1:17.0+dfsg1-2ubuntu4) ...
- Setting up libhtml-tree-perl (5.07-3) ...
- Setting up libtk8.6:amd64 (8.6.17-1build1) ...
- Setting up libpango-1.0-0:amd64 (1.57.0-1) ...
- Setting up libdrm-intel1:amd64 (2.4.131-1) ...
- Setting up libhtml-format-perl (2.16-2) ...
- Setting up libcairo2:amd64 (1.18.4-3) ...
- Setting up dbus-user-session (1.16.2-2ubuntu4) ...
- Setting up libnet-smtp-ssl-perl (1.04-2) ...
- Setting up systemd-cryptsetup (259.5-0ubuntu3) ...
- Setting up libmailtools-perl (2.22-1) ...
- Setting up libxt6t64:amd64 (1:1.2.1-1.3build1) ...
- Setting up libhttp-daemon-perl (6.16-1) ...
- Setting up alacritty (0.16.1-2ubuntu1) ...
- update-alternatives: using /usr/bin/alacritty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/x-terminal-emulator.1.gz because associated file /usr/share/man/man1/alacritty.1.gz (of link group x-terminal-emulator) does not exist
- Setting up libcairo-gobject2:amd64 (1.18.4-3) ...
- Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ...
- Setting up ibus-gtk3:amd64 (1.5.34~rc2-1) ...
- Setting up libcups2t64:amd64 (2.4.16-1ubuntu1) ...
- Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ...
- Setting up mesa-libgallium:amd64 (26.0.3-1ubuntu1) ...
- Setting up libxmu6:amd64 (2:1.1.3-4) ...
- Setting up libgbm1:amd64 (26.0.3-1ubuntu1) ...
- Setting up libgl1-mesa-dri:amd64 (26.0.3-1ubuntu1) ...
- Setting up dconf-service (0.49.0-4) ...
- Setting up libxaw7:amd64 (2:1.0.16-1build1) ...
- Setting up x11-xserver-utils (7.7+11build1) ...
- Setting up r-base-core (4.5.2-1ubuntu2) ...
- Creating config file /etc/R/Renviron with new version
- Setting up r-cran-lattice (0.22-9-1) ...
- Setting up r-cran-nlme (3.1.168-1build1) ...
- Setting up r-cran-cluster (2.1.8.2-1) ...
- Setting up r-cran-nnet (7.3-20-1) ...
- Setting up r-cran-codetools (0.2-20-1build1) ...
- Setting up r-cran-boot (1.3-32-1) ...
- Setting up libglx-mesa0:amd64 (26.0.3-1ubuntu1) ...
- Setting up libsdl2-classic:amd64 (2.32.10+dfsg-6) ...
- Setting up libglx0:amd64 (1.7.0-3) ...
- Setting up dconf-gsettings-backend:amd64 (0.49.0-4) ...
- Setting up r-cran-spatial (7.3-18-1) ...
- Setting up r-cran-mass (7.3-65-1) ...
- Setting up r-cran-foreign (0.8.91-1) ...
- Setting up libgl1:amd64 (1.7.0-3) ...
- Setting up r-cran-matrix (1.7-4-1) ...
- Setting up r-cran-kernsmooth (2.23-26-1build1) ...
- Setting up r-cran-mgcv (1.9-4-1) ...
- Setting up x11-utils (7.7+7build1) ...
- Setting up libsdl2-2.0-0:amd64 (2.32.10+dfsg-6) ...
- Setting up libgtk-3-common (3.24.52-0ubuntu1) ...
- Setting up gsettings-desktop-schemas (50.0-1ubuntu2) ...
- Setting up r-cran-class (7.3-23-1) ...
- Setting up r-cran-survival (3.8-6-1) ...
- Setting up at-spi2-core (2.60.0-1) ...
- Setting up r-cran-rpart (4.1.24-1build1) ...
- Setting up r-recommended (4.5.2-1ubuntu2) ...
- Setting up libheif1:amd64 (1.21.2-3) ...
- Setting up librsvg2-2:amd64 (2.61.3+dfsg-3) ...
- Setting up libgd3:amd64 (2.3.3-13ubuntu2) ...
- Setting up glycin-loaders (2.1.1+ds-0ubuntu1) ...
- Setting up libheif-plugin-aomdec:amd64 (1.21.2-3) ...
- Setting up libglycin-2-0:amd64 (2.1.1+ds-0ubuntu1) ...
- Setting up liblwp-protocol-https-perl (6.14-1) ...
- Setting up libwww-perl (6.81-1build1) ...
- Setting up libheif-plugin-aomenc:amd64 (1.21.2-3) ...
- Setting up glycin-thumbnailers (2.1.1+ds-0ubuntu1) ...
- Setting up libgdk-pixbuf-2.0-0:amd64 (2.44.5+dfsg-4ubuntu1) ...
- Setting up gtk-update-icon-cache (4.22.2+ds-1ubuntu1) ...
- Setting up libxml-parser-perl (2.47-1ubuntu1) ...
- Setting up libxml-twig-perl (1:3.54-1build1) ...
- Setting up libnet-dbus-perl (1.2.0-2build4) ...
- Setting up adwaita-icon-theme (50.0-1) ...
- update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
- Setting up libnotify4:amd64 (0.8.8-1) ...
- Setting up libgtk-3-0t64:amd64 (3.24.52-0ubuntu1) ...
- Setting up librsvg2-common:amd64 (2.61.3+dfsg-3) ...
- Setting up libdecor-0-plugin-1-gtk:amd64 (0.2.5-1) ...
- Setting up libwxgtk3.2-1t64:amd64 (3.2.9+dfsg-1) ...
- Setting up gnuplot-x11 (6.0.2+dfsg1-2ubuntu2) ...
- update-alternatives: using /usr/bin/gnuplot-x11 to provide /usr/bin/gnuplot (gnuplot) in auto mode
- update-alternatives: warning: skip creation of /usr/share/man/man1/gnuplot.1.gz because associated file /usr/share/man/man1/gnuplot-x11.1.gz (of link group gnuplot) does not exist
- Setting up libgtk-3-bin (3.24.52-0ubuntu1) ...
- Processing triggers for systemd (259.5-0ubuntu3) ...
- Processing triggers for procps (2:4.0.4-9ubuntu1) ...
- grep: /proc/1/environ: Permission denied
- procps: Applying updated sysctl configuration
- sysctl: setting key "kernel.core_pattern", ignoring: Read-only file system
- sysctl: setting key "kernel.sysrq", ignoring: Read-only file system
- sysctl: setting key "kernel.core_uses_pid", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.default.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.docker0.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno12399np0.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno12409np1.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno8303.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno8403.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.lo.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.default.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.docker0.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno12399np0.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno12409np1.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno8303.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno8403.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.lo.accept_source_route", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.default.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.docker0.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno12399np0.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno12409np1.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno8303.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.eno8403.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.lo.promote_secondaries", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.ping_group_range", ignoring: Read-only file system
- sysctl: setting key "net.core.default_qdisc", ignoring: Read-only file system
- sysctl: setting key "fs.protected_hardlinks", ignoring: Read-only file system
- sysctl: setting key "fs.protected_symlinks", ignoring: Read-only file system
- sysctl: setting key "fs.protected_regular", ignoring: Read-only file system
- sysctl: setting key "fs.protected_fifos", ignoring: Read-only file system
- sysctl: setting key "vm.max_map_count", ignoring: Read-only file system
- sysctl: setting key "kernel.pid_max", ignoring: Read-only file system
- sysctl: setting key "net.core.default_qdisc", ignoring: Read-only file system
- sysctl: setting key "kernel.printk", ignoring: Read-only file system
- sysctl: setting key "net.ipv6.conf.all.use_tempaddr", ignoring: Read-only file system
- sysctl: setting key "net.ipv6.conf.default.use_tempaddr", ignoring: Read-only file system
- sysctl: setting key "kernel.kptr_restrict", ignoring: Read-only file system
- sysctl: setting key "kernel.sysrq", ignoring: Read-only file system
- sysctl: setting key "vm.max_map_count", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.default.rp_filter", ignoring: Read-only file system
- sysctl: setting key "net.ipv4.conf.all.rp_filter", ignoring: Read-only file system
- sysctl: setting key "kernel.yama.ptrace_scope", ignoring: Read-only file system
- sysctl: setting key "vm.mmap_min_addr", ignoring: Read-only file system
- Processing triggers for libc-bin (2.43-2ubuntu2) ...
- Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.44.5+dfsg-4ubuntu1) ...

<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved batteries.3.10.0  (cached)
-> retrieved camlp-streams.5.0.1  (cached)
-> retrieved conf-r.1.0.0  (cached)
-> retrieved cpm.12.2.0  (cached)
-> retrieved cpu.2.0.0  (cached)
-> retrieved dolog.6.0.0  (cached)
-> installed conf-gnuplot.0.1
-> installed conf-autoconf.0.2
-> installed conf-r.1.0.0
-> retrieved dune.3.22.2  (cached)
-> retrieved minicli.5.0.2  (cached)
-> retrieved num.1.6  (cached)
-> retrieved ocamlfind.1.9.8  (cached)
-> retrieved odnnr.2.0.3  (https://github.com/UnixJunkie/odnnr/archive/v2.0.3.tar.gz)
-> retrieved parany.14.0.1  (cached)
-> installed num.1.6
-> installed ocamlfind.1.9.8
-> installed dune.3.22.2
-> installed dolog.6.0.0
-> installed minicli.5.0.2
-> installed camlp-streams.5.0.1
-> installed cpu.2.0.0
-> installed parany.14.0.1
-> installed batteries.3.10.0
-> installed cpm.12.2.0
[ERROR] The installation of odnnr failed at "R CMD BATCH install_keras.r".

#=== ERROR while installing odnnr.2.0.3 =======================================#
# context              2.5.1 | linux/x86_64 | ocaml-base-compiler.5.4.1 | pinned(https://github.com/UnixJunkie/odnnr/archive/v2.0.3.tar.gz)
# path                 ~/.opam/5.4/.opam-switch/build/odnnr.2.0.3
# command              ~/.opam/opam-init/hooks/sandbox.sh install R CMD BATCH install_keras.r
# exit-code            1
# env-file             ~/.opam/log/odnnr-7-1fe7e3.env
# output-file          ~/.opam/log/odnnr-7-1fe7e3.out



<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions failed
| - install odnnr 2.0.3
+- 
+- The following changes have been performed
| - install batteries     3.10.0
| - install camlp-streams 5.0.1
| - install conf-autoconf 0.2
| - install conf-gnuplot  0.1
| - install conf-r        1.0.0
| - install cpm           12.2.0
| - install cpu           2.0.0
| - install dolog         6.0.0
| - install dune          3.22.2
| - install minicli       5.0.2
| - install num           1.6
| - install ocamlfind     1.9.8
| - install parany        14.0.1
+- 

<><> odnnr.2.0.3 troubleshooting ><><><><><><><><><><><><><><><><><><><><><><><>
=> Please interact with pip3 then R to install required dependencies in user-space:
   pip3 install tensorflow keras
   R
   install.packages('keras', repos='http://cran.r-project.org')
   library(keras)
# To update the current shell environment, run: eval $(opam env)

The former state can be restored with:
    /usr/bin/opam switch import "/home/opam/.opam/5.4/.opam-switch/backup/state-20260427080100.export"
[WARNING] OPAMCONFIRMLEVEL was ignored because CLI 2.0 was requested and it was introduced in 2.1.
[WARNING] OPAMCONFIRMLEVEL was ignored because CLI 2.0 was requested and it was introduced in 2.1.
"/usr/bin/env" "bash" "-c" "opam reinstall odnnr.2.0.3;
        res=$?;
        test "$res" != 31 && exit "$res";
        export OPAMCLI=2.0;
        build_dir=$(opam var prefix)/.opam-switch/build;
        failed=$(ls "$build_dir");
        partial_fails="";
        for pkg in $failed; do
          if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"ubuntu-26.04\""; then
            echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.";
          fi;
          test "$pkg" != 'odnnr.2.0.3' && partial_fails="$partial_fails $pkg";
        done;
        test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}";
        exit 1" failed with exit status 1
2026-04-27 08:02.17: Job failed: Failed: Build failed
2026-04-27 08:02.17: Log analysis:
2026-04-27 08:02.17: >>> 
[ERROR] The installation of odnnr failed at "R CMD BATCH install_keras.r".
 (score = 20)
2026-04-27 08:02.17: The installation of odnnr failed at "R CMD BATCH install_keras.r".