(for PR #29096)
2025-12-15 03:22.25: New job: test linwrap.4.0.0 with dune-configurator.3.21.0~alpha4, using opam dev
from https://github.com/ocaml/opam-repository.git#refs/pull/29096/head (7d6af52f05e2c06c00193b2918193b6994ece701)
on debian-13-ocaml-4.14/amd64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/29096/head" && git reset --hard 7d6af52f
git fetch origin master
git merge --no-edit 2625e9877b44d517ad87b5bf4ff708f3e44b78d8
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-13-ocaml-4.14@sha256:277168101f7d4ebc452a75f825628d280c76dd0be7d8bcb58c24a5e50fe3d10d
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn dune-configurator.3.21.0~alpha4 3.21.0~alpha4
RUN opam reinstall dune-configurator.3.21.0~alpha4; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'dune-configurator.3.21.0~alpha4' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN opam reinstall linwrap.4.0.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'linwrap.4.0.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN (opam reinstall --with-test linwrap.4.0.0) || true
RUN opam reinstall --with-test --verbose linwrap.4.0.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'linwrap.4.0.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2025-12-15 03:22.25: Using cache hint "ocaml/opam:debian-13-ocaml-4.14@sha256:277168101f7d4ebc452a75f825628d280c76dd0be7d8bcb58c24a5e50fe3d10d-dune-configurator.3.21.0~alpha4-linwrap.4.0.0-7d6af52f05e2c06c00193b2918193b6994ece701"
2025-12-15 03:22.25: Using OBuilder spec:
((from ocaml/opam:debian-13-ocaml-4.14@sha256:277168101f7d4ebc452a75f825628d280c76dd0be7d8bcb58c24a5e50fe3d10d)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "opam option solver=builtin-0install && opam config report"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn dune-configurator.3.21.0~alpha4 3.21.0~alpha4"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall dune-configurator.3.21.0~alpha4;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'dune-configurator.3.21.0~alpha4' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall linwrap.4.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'linwrap.4.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (network host)
(shell "(opam reinstall --with-test linwrap.4.0.0) || true"))
(run (shell "opam reinstall --with-test --verbose linwrap.4.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'linwrap.4.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2025-12-15 03:22.25: Waiting for resource in pool OCluster
2025-12-15 04:54.52: Waiting for worker…
2025-12-15 04:57.25: Got resource from pool OCluster
Building on odawa.caelum.ci.dev
All commits already cached
HEAD is now at 2625e9877b Merge pull request #29094 from anmonteiro/patch-9
Updating 2625e9877b..7d6af52f05
Fast-forward
.../chrome-trace/chrome-trace.3.21.0~alpha4/opam | 41 ++++++++++++
.../dune-action-plugin.3.21.0~alpha4/opam | 54 ++++++++++++++++
.../dune-build-info.3.21.0~alpha4/opam | 47 ++++++++++++++
.../dune-configurator.3.21.0~alpha4/opam | 51 +++++++++++++++
packages/dune-glob/dune-glob.3.21.0~alpha4/opam | 44 +++++++++++++
.../dune-private-libs.3.21.0~alpha4/opam | 52 +++++++++++++++
.../dune-rpc-lwt/dune-rpc-lwt.3.21.0~alpha4/opam | 43 +++++++++++++
packages/dune-rpc/dune-rpc.3.21.0~alpha4/opam | 46 +++++++++++++
packages/dune-site/dune-site.3.21.0~alpha4/opam | 39 +++++++++++
packages/dune/dune.3.21.0~alpha4/opam | 75 ++++++++++++++++++++++
packages/dyn/dyn.3.21.0~alpha4/opam | 42 ++++++++++++
packages/fs-io/fs-io.3.21.0~alpha4/opam | 41 ++++++++++++
packages/ocamlc-loc/ocamlc-loc.3.21.0~alpha4/opam | 45 +++++++++++++
packages/ordering/ordering.3.21.0~alpha4/opam | 40 ++++++++++++
packages/stdune/stdune.3.21.0~alpha4/opam | 48 ++++++++++++++
.../top-closure/top-closure.3.21.0~alpha4/opam | 40 ++++++++++++
packages/xdg/xdg.3.21.0~alpha4/opam | 41 ++++++++++++
17 files changed, 789 insertions(+)
create mode 100644 packages/chrome-trace/chrome-trace.3.21.0~alpha4/opam
create mode 100644 packages/dune-action-plugin/dune-action-plugin.3.21.0~alpha4/opam
create mode 100644 packages/dune-build-info/dune-build-info.3.21.0~alpha4/opam
create mode 100644 packages/dune-configurator/dune-configurator.3.21.0~alpha4/opam
create mode 100644 packages/dune-glob/dune-glob.3.21.0~alpha4/opam
create mode 100644 packages/dune-private-libs/dune-private-libs.3.21.0~alpha4/opam
create mode 100644 packages/dune-rpc-lwt/dune-rpc-lwt.3.21.0~alpha4/opam
create mode 100644 packages/dune-rpc/dune-rpc.3.21.0~alpha4/opam
create mode 100644 packages/dune-site/dune-site.3.21.0~alpha4/opam
create mode 100644 packages/dune/dune.3.21.0~alpha4/opam
create mode 100644 packages/dyn/dyn.3.21.0~alpha4/opam
create mode 100644 packages/fs-io/fs-io.3.21.0~alpha4/opam
create mode 100644 packages/ocamlc-loc/ocamlc-loc.3.21.0~alpha4/opam
create mode 100644 packages/ordering/ordering.3.21.0~alpha4/opam
create mode 100644 packages/stdune/stdune.3.21.0~alpha4/opam
create mode 100644 packages/top-closure/top-closure.3.21.0~alpha4/opam
create mode 100644 packages/xdg/xdg.3.21.0~alpha4/opam
(from ocaml/opam:debian-13-ocaml-4.14@sha256:277168101f7d4ebc452a75f825628d280c76dd0be7d8bcb58c24a5e50fe3d10d)
2025-12-15 04:58.24 ---> using "d81b3b20b9dbe813f4813251eb45f7f230344599357169e34b0d2f872bf65895" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2025-12-15 04:58.24 ---> using "4c0c738834a7be54719ab9b07c911eba51e45ad4298c42597f7d3da72b1c15d4" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Continue? [Y/n] y
[NOTE] The 'jobs' option was reset, its value was 71 and its new value will vary according to the current number of cores on your machine. You can restore the fixed value using:
opam option jobs=71 --global
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2025-12-15 04:58.24 ---> using "8bb6d27bb5f7ebe9771219e3ecd730184d5e10ab877134c11c12ee3b1a6d3b96" from cache
/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version 2.5.0
# self-upgrade no
# system arch=x86_64 os=linux os-distribution=debian os-version=13
# solver builtin-0install
# install-criteria -changed,-count[avoid-version,solution]
# upgrade-criteria -count[avoid-version,solution]
# jobs 255
# repositories 1 (version-controlled)
# pinned 1 (version)
# current-switch 4.14
# invariant ["ocaml-base-compiler" {= "4.14.2"}]
# compiler-packages ocaml-base-compiler.4.14.2, ocaml-options-vanilla.1
# ocaml:native true
# ocaml:native-tools true
# ocaml:native-dynlink true
# ocaml:stubsdir /home/opam/.opam/4.14/lib/ocaml/stublibs:/home/opam/.opam/4.14/lib/ocaml
# ocaml:preinstalled false
# ocaml:compiler 4.14.2
2025-12-15 04:58.24 ---> using "35019bd57e8933485bd938828fe288c3674216a4757e13b1dac8ce6b21035ac2" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2025-12-15 04:58.24 ---> using "e09ab9992a764acab15da9cff99e3d4d978b8a77f33714cc5d19d16d3539eb49" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2025-12-15 04:58.24 ---> using "effd8012bb926235286407b71766f59239cdbd05eeb488dee8fd8b0266ec56c0" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2025-12-15 04:58.24 ---> using "da8e6b523210d6314ae3052775034fea74104aae3f193362b9609201bf93d1d2" from cache
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian trixie InRelease
- Get:2 http://deb.debian.org/debian trixie-updates InRelease [47.3 kB]
- Get:3 http://deb.debian.org/debian-security trixie-security InRelease [43.4 kB]
- Get:4 http://deb.debian.org/debian-security trixie-security/main amd64 Packages [84.8 kB]
- Fetched 176 kB in 0s (2191 kB/s)
- Reading package lists...
2025-12-15 04:58.24 ---> using "cd39baac0c78bb4b886710bb093d6b750f25b1cabe39d7490bff23ee544310da" from cache
/home/opam: (run (shell "opam pin add -k version -yn dune-configurator.3.21.0~alpha4 3.21.0~alpha4"))
dune-configurator is now pinned to version 3.21.0~alpha4
2025-12-15 04:58.25 ---> using "7b3cd474b666dc4464c9a9a15760409261404712b0a9534f47f427b10a91e917" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall dune-configurator.3.21.0~alpha4;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'dune-configurator.3.21.0~alpha4' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
dune-configurator.3.21.0~alpha4 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 3 packages
- install csexp 1.5.2 [required by dune-configurator]
- install dune 3.21.0~alpha4 [required by dune-configurator]
- install dune-configurator 3.21.0~alpha4 (pinned)
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved csexp.1.5.2 (cached)
-> retrieved dune.3.21.0~alpha4, dune-configurator.3.21.0~alpha4 (cached)
-> installed dune.3.21.0~alpha4
-> installed csexp.1.5.2
-> installed dune-configurator.3.21.0~alpha4
Done.
# To update the current shell environment, run: eval $(opam env)
2025-12-15 04:58.25 ---> using "4381dc27198c5878c4abc161632636ac362e5f10b007d48ac6d7fc7662ba7d0f" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall linwrap.4.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'linwrap.4.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
linwrap.4.0.0 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 33 packages
- install base-bytes base [required by dokeysto, ocamlnet]
- install batteries 3.10.0 [required by linwrap]
- install camlp-streams 5.0.1 [required by batteries]
- install camltc 0.9.8 [required by dokeysto_camltc]
- install conf-autoconf 0.2 [required by cpu]
- install conf-bash 1 [required by camltc]
- install conf-liblinear-tools 1.0.0 [required by linwrap]
- install conf-python-3 9.0.0 [required by linwrap]
- install conf-rdkit 1 [required by linwrap]
- install conf-which 1 [required by conf-liblinear-tools]
- install cpm 12.2.0 [required by linwrap]
- install cppo 1.8.0 [required by lwt]
- install cpu 2.0.0 [required by parany]
- install dokeysto 4.0.2 [required by dokeysto_camltc]
- install dokeysto_camltc 4.0.2 [required by linwrap]
- install dolog 4.0.0 [required by linwrap]
- install extunix 0.4.4 [required by dokeysto]
- install linwrap 4.0.0
- install logs 0.10.0 [required by camltc]
- install lwt 5.9.2 [required by camltc]
- install minicli 5.0.2 [required by linwrap]
- install num 1.6 [required by batteries]
- install ocaml-compiler-libs v0.12.4 [required by ppxlib]
- install ocamlbuild 0.16.1 [required by ocamlnet]
- install ocamlfind 1.9.8 [required by batteries]
- install ocamlnet 4.1.9-2 [required by parany]
- install ocplib-endian 1.2 [required by lwt]
- install parany 9.0.0 [required by linwrap]
- install ppx_derivers 1.2.1 [required by ppxlib]
- install ppxlib 0.37.0 [required by extunix]
- install sexplib0 v0.17.0 [required by ppxlib]
- install stdlib-shims 0.3.0 [required by ppxlib]
- install topkg 1.1.1 [required by logs]
The following system packages will first need to be installed:
autoconf liblinear-tools librdkit-dev python3 python3-rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "liblinear-tools" "librdkit-dev" "python3" "python3-rdkit"
- Preconfiguring packages ...
- Selecting previously unselected package libpython3.13-minimal:amd64.
- (Reading database ...
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(Reading database ... 20622 files and directories currently installed.)
- Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ...
- Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ...
- Selecting previously unselected package python3.13-minimal.
- Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ...
- Unpacking python3.13-minimal (3.13.5-2) ...
- Setting up libpython3.13-minimal:amd64 (3.13.5-2) ...
- Setting up python3.13-minimal (3.13.5-2) ...
- Selecting previously unselected package python3-minimal.
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(Reading database ... 20947 files and directories currently installed.)
- Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ...
- Unpacking python3-minimal (3.13.5-1) ...
- Selecting previously unselected package media-types.
- Preparing to unpack .../1-media-types_13.0.0_all.deb ...
- Unpacking media-types (13.0.0) ...
- Selecting previously unselected package readline-common.
- Preparing to unpack .../2-readline-common_8.2-6_all.deb ...
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- Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
- Unpacking libreadline8t64:amd64 (8.2-6) ...
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- Preparing to unpack .../00-python3_3.13.5-1_amd64.deb ...
- Unpacking python3 (3.13.5-1) ...
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- Setting up media-types (13.0.0) ...
- Setting up libboost-python1.83.0 (1.83.0-4.2) ...
- Setting up libpixman-1-0:amd64 (0.44.0-3) ...
- Setting up libxrender1:amd64 (1:0.9.12-1) ...
- Setting up libxcb-render0:amd64 (1.17.0-2+b1) ...
- Setting up fonts-freefont-ttf (20211204+svn4273-2) ...
- Setting up m4 (1.4.19-8) ...
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- Setting up rdkit-data (202503.1-4) ...
- Setting up libboost-serialization1.83.0:amd64 (1.83.0-4.2) ...
- Setting up libboost-numpy1.83.0 (1.83.0-4.2) ...
- Setting up autotools-dev (20240727.1) ...
- Setting up libblas3:amd64 (3.12.1-6) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.2) ...
- Setting up fonts-dejavu-mono (2.37-8) ...
- Setting up libpng16-16t64:amd64 (1.6.48-1+deb13u1) ...
- Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ...
- Setting up fonts-dejavu-core (2.37-8) ...
- Setting up libgfortran5:amd64 (14.2.0-19) ...
- Setting up autoconf (2.72-3.1) ...
- Setting up libcoordgen3:amd64 (3.0.2-1+b2) ...
- Setting up libinchi1.07 (1.07.3+dfsg-1) ...
- Setting up readline-common (8.2-6) ...
- Setting up automake (1:1.17-4) ...
- update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
- Setting up liblapack3:amd64 (3.12.1-6) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up fontconfig-config (2.15.0-2.3) ...
- Setting up liblinear4:amd64 (2.3.0+dfsg-5+b2) ...
- Setting up libmaeparser1:amd64 (1.3.1-1+b2) ...
- Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
- Setting up libreadline8t64:amd64 (8.2-6) ...
- Setting up libfontconfig1:amd64 (2.15.0-2.3) ...
- Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ...
- Setting up libpython3-stdlib:amd64 (3.13.5-1) ...
- Setting up liblinear-tools (2.3.0+dfsg-5+b2) ...
- Setting up python3.13 (3.13.5-2) ...
- Setting up python3 (3.13.5-1) ...
- running python rtupdate hooks for python3.13...
- running python post-rtupdate hooks for python3.13...
- Setting up libcairo2:amd64 (1.18.4-1+b1) ...
- Setting up python3-numpy (1:2.2.4+ds-1) ...
- Setting up librdkit1t64 (202503.1-4) ...
- Setting up python3-rdkit (202503.1-4) ...
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- Processing triggers for libc-bin (2.41-12) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved batteries.3.10.0 (cached)
-> retrieved camlp-streams.5.0.1 (cached)
-> retrieved camltc.0.9.8 (cached)
-> retrieved conf-python-3.9.0.0 (cached)
-> retrieved conf-rdkit.1 (cached)
-> retrieved cpm.12.2.0 (cached)
-> retrieved cppo.1.8.0 (cached)
-> retrieved cpu.2.0.0 (cached)
-> retrieved dokeysto.4.0.2, dokeysto_camltc.4.0.2 (cached)
-> retrieved dolog.4.0.0 (cached)
-> installed conf-bash.1
-> installed conf-which.1
-> installed conf-python-3.9.0.0
-> installed conf-autoconf.0.2
-> retrieved extunix.0.4.4 (cached)
-> installed conf-liblinear-tools.1.0.0
-> retrieved linwrap.4.0.0 (cached)
-> retrieved logs.0.10.0 (cached)
-> retrieved lwt.5.9.2 (cached)
-> installed camlp-streams.5.0.1
-> installed conf-rdkit.1
-> retrieved minicli.5.0.2 (cached)
-> retrieved num.1.6 (cached)
-> retrieved ocaml-compiler-libs.v0.12.4 (cached)
-> installed dolog.4.0.0
-> retrieved ocamlbuild.0.16.1 (cached)
-> retrieved ocamlfind.1.9.8 (cached)
-> installed minicli.5.0.2
-> retrieved ocamlnet.4.1.9-2 (cached)
-> installed cppo.1.8.0
-> retrieved ocplib-endian.1.2 (cached)
-> retrieved parany.9.0.0 (cached)
-> retrieved ppx_derivers.1.2.1 (cached)
-> installed ocaml-compiler-libs.v0.12.4
-> retrieved ppxlib.0.37.0 (cached)
-> retrieved sexplib0.v0.17.0 (cached)
-> installed ppx_derivers.1.2.1
-> retrieved stdlib-shims.0.3.0 (cached)
-> retrieved topkg.1.1.1 (cached)
-> installed stdlib-shims.0.3.0
-> installed num.1.6
-> installed sexplib0.v0.17.0
-> installed cpu.2.0.0
-> installed ocamlfind.1.9.8
-> installed base-bytes.base
-> installed ocamlbuild.0.16.1
-> installed ocplib-endian.1.2
-> installed lwt.5.9.2
-> installed batteries.3.10.0
-> installed cpm.12.2.0
-> installed topkg.1.1.1
-> installed logs.0.10.0
-> installed ppxlib.0.37.0
-> installed camltc.0.9.8
-> installed extunix.0.4.4
-> installed dokeysto.4.0.2
-> installed dokeysto_camltc.4.0.2
-> installed ocamlnet.4.1.9-2
-> installed parany.9.0.0
-> installed linwrap.4.0.0
Done.
# To update the current shell environment, run: eval $(opam env)
2025-12-15 04:59.52 ---> saved as "da152ac46ce83758690a7b84a9d3606af90e0060b2afe97e20bc407a5e1664a8"
/home/opam: (run (network host)
(shell "(opam reinstall --with-test linwrap.4.0.0) || true"))
The following actions will be performed:
=== recompile 1 package
- recompile linwrap 4.0.0
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved linwrap.4.0.0 (https://opam.ocaml.org/cache)
-> removed linwrap.4.0.0
-> installed linwrap.4.0.0
Done.
# To update the current shell environment, run: eval $(opam env)
2025-12-15 04:59.59 ---> saved as "82d2ca9774708581a0f3eaf7f3f1d3c72eb69e611b5c7505410bae758fdb7aa3"
/home/opam: (run (shell "opam reinstall --with-test --verbose linwrap.4.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'linwrap.4.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
The following actions will be performed:
=== recompile 1 package
- recompile linwrap 4.0.0
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/4: [linwrap.4.0.0: extract]
-> retrieved linwrap.4.0.0 (cached)
Processing 2/4: [linwrap: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "linwrap" "-j" "255" (CWD=/home/opam/.opam/4.14/.opam-switch/build/linwrap.4.0.0)
-> compiled linwrap.4.0.0
-> removed linwrap.4.0.0
Processing 4/4: [linwrap: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/ecfp6.py" "/home/opam/.opam/4.14/bin/linwrap_ecfp6.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/linwrap.4.0.0)
-> installed linwrap.4.0.0
Done.
# To update the current shell environment, run: eval $(opam env)
2025-12-15 05:00.05 ---> saved as "99280b78db4901deff0cbe5c6ab7415d08ad29ef2fc759d80a0f8bf9adb19661"
Job succeeded
2025-12-15 05:00.21: Job succeeded