- github
- ocaml
- opam-repository
- 89a6ae
- compilers,4.14,dune-configurator.3.23.0~alpha2,revdeps,molenc.5.0.0
(not at the head of any monitored branch or PR)
2026-04-30 02:05.06: New job: test molenc.5.0.0 with dune-configurator.3.23.0~alpha2, using opam dev
from https://github.com/ocaml/opam-repository.git#refs/pull/29824/head (89a6ae888498500bf7c0fc05361da936fc6acacf)
on debian-13-ocaml-4.14/amd64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/29824/head" && git reset --hard 89a6ae88
git fetch origin master
git merge --no-edit d1c56642b8ca7e1166c90bfe0c74f38007bbad58
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-13-ocaml-4.14@sha256:9fe84ffeeaa92507d198c7af8adb382726e06ae36c031f5ef645a3241cac0353
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn dune-configurator.3.23.0~alpha2 3.23.0~alpha2
RUN opam reinstall dune-configurator.3.23.0~alpha2; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'dune-configurator.3.23.0~alpha2' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN opam reinstall molenc.5.0.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'molenc.5.0.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN (opam reinstall --with-test molenc.5.0.0) || true
RUN opam reinstall --with-test --verbose molenc.5.0.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'molenc.5.0.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2026-04-30 02:05.06: Using cache hint "ocaml/opam:debian-13-ocaml-4.14@sha256:9fe84ffeeaa92507d198c7af8adb382726e06ae36c031f5ef645a3241cac0353-dune-configurator.3.23.0~alpha2-molenc.5.0.0-89a6ae888498500bf7c0fc05361da936fc6acacf"
2026-04-30 02:05.06: Using OBuilder spec:
((from ocaml/opam:debian-13-ocaml-4.14@sha256:9fe84ffeeaa92507d198c7af8adb382726e06ae36c031f5ef645a3241cac0353)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "opam option solver=builtin-0install && opam config report"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn dune-configurator.3.23.0~alpha2 3.23.0~alpha2"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall dune-configurator.3.23.0~alpha2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'dune-configurator.3.23.0~alpha2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall molenc.5.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'molenc.5.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (network host)
(shell "(opam reinstall --with-test molenc.5.0.0) || true"))
(run (shell "opam reinstall --with-test --verbose molenc.5.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'molenc.5.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2026-04-30 02:05.06: Waiting for resource in pool OCluster
2026-04-30 11:32.11: Waiting for worker…
2026-04-30 11:34.45: Got resource from pool OCluster
Building on laodoke.caelum.ci.dev
All commits already cached
Updating files: 68% (12919/18887)
Updating files: 69% (13033/18887)
Updating files: 70% (13221/18887)
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Updating files: 99% (18699/18887)
Updating files: 100% (18887/18887)
Updating files: 100% (18887/18887), done.
HEAD is now at d1c56642b8 Merge pull request #29820 from jmid/core-0.17.1-bound
Merge made by the 'ort' strategy.
.../chrome-trace/chrome-trace.3.23.0~alpha2/opam | 39 +++++++++++
.../dune-action-plugin.3.23.0~alpha2/opam | 52 ++++++++++++++
.../dune-action-trace.3.23.0~alpha2/opam | 39 +++++++++++
.../dune-build-info.3.23.0~alpha2/opam | 45 ++++++++++++
.../dune-configurator.3.23.0~alpha2/opam | 49 +++++++++++++
packages/dune-glob/dune-glob.3.23.0~alpha2/opam | 42 ++++++++++++
.../dune-private-libs.3.23.0~alpha2/opam | 50 ++++++++++++++
.../dune-rpc-lwt/dune-rpc-lwt.3.23.0~alpha2/opam | 41 +++++++++++
packages/dune-rpc/dune-rpc.3.23.0~alpha2/opam | 44 ++++++++++++
packages/dune-site/dune-site.3.23.0~alpha2/opam | 37 ++++++++++
packages/dune/dune.3.23.0~alpha2/opam | 80 ++++++++++++++++++++++
packages/dyn/dyn.3.23.0~alpha2/opam | 40 +++++++++++
packages/fs-io/fs-io.3.23.0~alpha2/opam | 39 +++++++++++
packages/ocamlc-loc/ocamlc-loc.3.23.0~alpha2/opam | 43 ++++++++++++
packages/ordering/ordering.3.23.0~alpha2/opam | 38 ++++++++++
packages/stdune/stdune.3.23.0~alpha2/opam | 46 +++++++++++++
.../top-closure/top-closure.3.23.0~alpha2/opam | 38 ++++++++++
packages/xdg/xdg.3.23.0~alpha2/opam | 39 +++++++++++
18 files changed, 801 insertions(+)
create mode 100644 packages/chrome-trace/chrome-trace.3.23.0~alpha2/opam
create mode 100644 packages/dune-action-plugin/dune-action-plugin.3.23.0~alpha2/opam
create mode 100644 packages/dune-action-trace/dune-action-trace.3.23.0~alpha2/opam
create mode 100644 packages/dune-build-info/dune-build-info.3.23.0~alpha2/opam
create mode 100644 packages/dune-configurator/dune-configurator.3.23.0~alpha2/opam
create mode 100644 packages/dune-glob/dune-glob.3.23.0~alpha2/opam
create mode 100644 packages/dune-private-libs/dune-private-libs.3.23.0~alpha2/opam
create mode 100644 packages/dune-rpc-lwt/dune-rpc-lwt.3.23.0~alpha2/opam
create mode 100644 packages/dune-rpc/dune-rpc.3.23.0~alpha2/opam
create mode 100644 packages/dune-site/dune-site.3.23.0~alpha2/opam
create mode 100644 packages/dune/dune.3.23.0~alpha2/opam
create mode 100644 packages/dyn/dyn.3.23.0~alpha2/opam
create mode 100644 packages/fs-io/fs-io.3.23.0~alpha2/opam
create mode 100644 packages/ocamlc-loc/ocamlc-loc.3.23.0~alpha2/opam
create mode 100644 packages/ordering/ordering.3.23.0~alpha2/opam
create mode 100644 packages/stdune/stdune.3.23.0~alpha2/opam
create mode 100644 packages/top-closure/top-closure.3.23.0~alpha2/opam
create mode 100644 packages/xdg/xdg.3.23.0~alpha2/opam
(from ocaml/opam:debian-13-ocaml-4.14@sha256:9fe84ffeeaa92507d198c7af8adb382726e06ae36c031f5ef645a3241cac0353)
2026-04-30 11:34.50 ---> using "59750879172620501422dd230c4db220684ca7fe3e97409754eb72dcd3390183" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2026-04-30 11:34.50 ---> using "b9ebb375f27da820f646269f579489455309b96c19083cd92f7f6ddd05a4b5f2" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Continue? [Y/n] y
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2026-04-30 11:34.50 ---> using "a861010f9e8d58738e62217a8c0fc067b85ae67b915e1ef93e08d814bb3c914c" from cache
/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version 2.5.1
# self-upgrade no
# system arch=x86_64 os=linux os-distribution=debian os-version=13
# solver builtin-0install
# install-criteria -changed,-count[avoid-version,solution]
# upgrade-criteria -count[avoid-version,solution]
# jobs 71
# repositories 1 (version-controlled)
# pinned 1 (version)
# current-switch 4.14
# invariant ["ocaml-base-compiler" {= "4.14.3"}]
# compiler-packages ocaml-base-compiler.4.14.3, ocaml-options-vanilla.1
# ocaml:native true
# ocaml:native-tools true
# ocaml:native-dynlink true
# ocaml:stubsdir /home/opam/.opam/4.14/lib/ocaml/stublibs:/home/opam/.opam/4.14/lib/ocaml
# ocaml:preinstalled false
# ocaml:compiler 4.14.3
2026-04-30 11:34.50 ---> using "a880c606232c92d84d818c349c45696fe9be139917bfa5f7b1065b497e8df441" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2026-04-30 11:34.50 ---> using "47c085e53aa5880966ff9fc1e1e12a4661255166181f7931a397db06034201cf" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2026-04-30 11:34.51 ---> using "4f46738dfb91aa0cd6670022d574de26b7ba05050d8f85957ea4872d96399e01" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2026-04-30 11:34.51 ---> using "f445e8c26fbca2dd0e343fb9cad949aab8e50ebe8f19361a10c799b6322ab39c" from cache
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian trixie InRelease
- Get:2 http://deb.debian.org/debian trixie-updates InRelease [47.3 kB]
- Get:3 http://deb.debian.org/debian-security trixie-security InRelease [43.4 kB]
- Get:4 http://deb.debian.org/debian-security trixie-security/main amd64 Packages [129 kB]
- Fetched 219 kB in 0s (1642 kB/s)
- Reading package lists...
-
2026-04-30 11:34.51 ---> using "b966a5b49a15ba3eb63ca44315c18e89b0e8b1ab5327a74622eb8f27705503f7" from cache
/home/opam: (run (shell "opam pin add -k version -yn dune-configurator.3.23.0~alpha2 3.23.0~alpha2"))
dune-configurator is now pinned to version 3.23.0~alpha2
2026-04-30 11:34.51 ---> using "9626eb3f72c6886eed38db70a806f24da7d64d25588b5416dc43cf8d67558751" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall dune-configurator.3.23.0~alpha2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'dune-configurator.3.23.0~alpha2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
dune-configurator.3.23.0~alpha2 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 3 packages
- install csexp 1.5.2 [required by dune-configurator]
- install dune 3.23.0~alpha2 [required by dune-configurator]
- install dune-configurator 3.23.0~alpha2 (pinned)
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved csexp.1.5.2 (cached)
-> retrieved dune.3.23.0~alpha2, dune-configurator.3.23.0~alpha2 (cached)
-> installed dune.3.23.0~alpha2
-> installed csexp.1.5.2
-> installed dune-configurator.3.23.0~alpha2
Done.
# To update the current shell environment, run: eval $(opam env)
2026-04-30 11:34.51 ---> using "79495b309dbba2c640b58413499799bf6eb0b6e53b5025f16354c21ab3266ac1" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall molenc.5.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'molenc.5.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
molenc.5.0.0 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 11 packages
- install batteries 3.10.0 [required by molenc]
- install bst 7.1.0 [required by molenc]
- install camlp-streams 5.0.1 [required by batteries]
- install conf-python-3 9.0.0 [required by molenc]
- install conf-rdkit 1 [required by molenc]
- install dolog 4.0.0 [required by molenc]
- install minicli 5.0.2 [required by molenc]
- install molenc 5.0.0
- install num 1.6 [required by batteries]
- install ocamlfind 1.9.8 [required by batteries]
- install parmap 1.2.5 [required by molenc]
The following system packages will first need to be installed:
librdkit-dev python3 python3-rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "librdkit-dev" "python3" "python3-rdkit"
- Preconfiguring packages ...
- Selecting previously unselected package libpython3.13-minimal:amd64.
- (Reading database ...
(Reading database ... 5%
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(Reading database ... 20623 files and directories currently installed.)
- Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ...
- Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ...
- Selecting previously unselected package python3.13-minimal.
- Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ...
- Unpacking python3.13-minimal (3.13.5-2) ...
- Setting up libpython3.13-minimal:amd64 (3.13.5-2) ...
- Setting up python3.13-minimal (3.13.5-2) ...
- Selecting previously unselected package python3-minimal.
- (Reading database ...
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(Reading database ... 20948 files and directories currently installed.)
- Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ...
- Unpacking python3-minimal (3.13.5-1) ...
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- Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
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- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
- Unpacking libreadline8t64:amd64 (8.2-6) ...
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- Setting up python3-minimal (3.13.5-1) ...
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- Setting up libpixman-1-0:amd64 (0.44.0-3) ...
- Setting up libxrender1:amd64 (1:0.9.12-1) ...
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- Setting up libboost-numpy1.83.0 (1.83.0-4.2) ...
- Setting up libblas3:amd64 (3.12.1-6) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.2) ...
- Setting up fonts-dejavu-mono (2.37-8) ...
- Setting up libpng16-16t64:amd64 (1.6.48-1+deb13u4) ...
- Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ...
- Setting up fonts-dejavu-core (2.37-8) ...
- Setting up libgfortran5:amd64 (14.2.0-19) ...
- Setting up libcoordgen3:amd64 (3.0.2-1+b2) ...
- Setting up libinchi1.07 (1.07.3+dfsg-1) ...
- Setting up readline-common (8.2-6) ...
- Setting up liblapack3:amd64 (3.12.1-6) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up fontconfig-config (2.15.0-2.3) ...
- Setting up libmaeparser1:amd64 (1.3.1-1+b2) ...
- Setting up libfreetype6:amd64 (2.13.3+dfsg-1+deb13u1) ...
- Setting up libreadline8t64:amd64 (8.2-6) ...
- Setting up libfontconfig1:amd64 (2.15.0-2.3) ...
- Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ...
- Setting up libpython3-stdlib:amd64 (3.13.5-1) ...
- Setting up python3.13 (3.13.5-2) ...
- Setting up python3 (3.13.5-1) ...
- running python rtupdate hooks for python3.13...
- running python post-rtupdate hooks for python3.13...
- Setting up libcairo2:amd64 (1.18.4-1+b1) ...
- Setting up python3-numpy (1:2.2.4+ds-1) ...
- Setting up librdkit1t64 (202503.1-4) ...
- Setting up python3-rdkit (202503.1-4) ...
- Setting up librdkit-dev (202503.1-4) ...
- Processing triggers for libc-bin (2.41-12+deb13u2) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved batteries.3.10.0 (cached)
-> retrieved bst.7.1.0 (cached)
-> retrieved camlp-streams.5.0.1 (cached)
-> retrieved conf-python-3.9.0.0 (cached)
-> retrieved conf-rdkit.1 (cached)
-> retrieved dolog.4.0.0 (cached)
-> retrieved minicli.5.0.2 (cached)
-> installed conf-python-3.9.0.0
-> retrieved molenc.5.0.0 (cached)
-> retrieved num.1.6 (cached)
-> retrieved ocamlfind.1.9.8 (cached)
-> installed dolog.4.0.0
-> installed camlp-streams.5.0.1
-> installed minicli.5.0.2
-> installed conf-rdkit.1
-> retrieved parmap.1.2.5 (cached)
-> installed parmap.1.2.5
-> installed num.1.6
-> installed ocamlfind.1.9.8
-> installed batteries.3.10.0
-> installed bst.7.1.0
-> installed molenc.5.0.0
Done.
# To update the current shell environment, run: eval $(opam env)
2026-04-30 11:35.30 ---> saved as "220092db16121c3825792737f29e676a54397cfc73d43933c2309179576d52c1"
/home/opam: (run (network host)
(shell "(opam reinstall --with-test molenc.5.0.0) || true"))
The following actions will be performed:
=== recompile 1 package
- recompile molenc 5.0.0
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved molenc.5.0.0 (https://opam.ocaml.org/cache)
-> removed molenc.5.0.0
-> installed molenc.5.0.0
Done.
# To update the current shell environment, run: eval $(opam env)
2026-04-30 11:35.39 ---> saved as "af7a8d1eabb33af6eaac46006626e9cc895f26f2d00a549522795426fe175c92"
/home/opam: (run (shell "opam reinstall --with-test --verbose molenc.5.0.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'molenc.5.0.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
The following actions will be performed:
=== recompile 1 package
- recompile molenc 5.0.0
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/4: [molenc.5.0.0: extract]
-> retrieved molenc.5.0.0 (cached)
Processing 2/4: [molenc: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "molenc" "-j" "71" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.5.0.0)
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/.molenc.objs/byte -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -no-alias-deps -open Molenc -o src/.molenc.objs/byte/molenc__Utls.cmo -c -impl src/utls.ml)
- File "src/utls.ml", line 332, characters 13-31:
- 332 | Array.sort Pervasives.compare xs;
- ^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Stdlib.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/.molenc.objs/byte -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -no-alias-deps -open Molenc -o src/.molenc.objs/byte/molenc__Atom_env.cmo -c -impl src/atom_env.ml)
- File "src/atom_env.ml", line 30, characters 16-32:
- 30 | let strings = BatString.nsplit s ~by:"," in
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
- File "src/atom_env.ml", line 50, characters 22-38:
- 50 | let layer_strings = BatString.nsplit s ~by:";" in
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/.molenc.objs/byte -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -no-alias-deps -open Molenc -o src/.molenc.objs/byte/molenc__MyList.cmo -c -impl src/myList.ml)
- File "src/myList.ml", line 27, characters 14-30:
- 27 | map of_str (BatString.nsplit s' ~by:";")
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/.molenc.objs/byte -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -no-alias-deps -open Molenc -o src/.molenc.objs/byte/molenc__Ap_types.cmo -c -impl src/ap_types.ml)
- File "src/ap_types.ml", line 54, characters 25-41:
- 54 | let dist_strings = BatString.nsplit line ~by:" " in
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlopt.opt -w -40 -g -I src/.molenc.objs/byte -I src/.molenc.objs/native -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -intf-suffix .ml -no-alias-deps -open Molenc -o src/.molenc.objs/native/molenc__Utls.cmx -c -impl src/utls.ml)
- File "src/utls.ml", line 332, characters 13-31:
- 332 | Array.sort Pervasives.compare xs;
- ^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Stdlib.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlopt.opt -w -40 -g -I src/.molenc.objs/byte -I src/.molenc.objs/native -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -intf-suffix .ml -no-alias-deps -open Molenc -o src/.molenc.objs/native/molenc__Atom_env.cmx -c -impl src/atom_env.ml)
- File "src/atom_env.ml", line 30, characters 16-32:
- 30 | let strings = BatString.nsplit s ~by:"," in
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
- File "src/atom_env.ml", line 50, characters 22-38:
- 50 | let layer_strings = BatString.nsplit s ~by:";" in
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlopt.opt -w -40 -g -I src/.molenc.objs/byte -I src/.molenc.objs/native -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -intf-suffix .ml -no-alias-deps -open Molenc -o src/.molenc.objs/native/molenc__MyList.cmx -c -impl src/myList.ml)
- File "src/myList.ml", line 27, characters 14-30:
- 27 | map of_str (BatString.nsplit s' ~by:";")
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlopt.opt -w -40 -g -I src/.molenc.objs/byte -I src/.molenc.objs/native -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -intf-suffix .ml -no-alias-deps -open Molenc -o src/.molenc.objs/native/molenc__Ap_types.cmx -c -impl src/ap_types.ml)
- File "src/ap_types.ml", line 54, characters 25-41:
- 54 | let dist_strings = BatString.nsplit line ~by:" " in
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
-> compiled molenc.5.0.0
-> removed molenc.5.0.0
Processing 4/4: [molenc: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_common.py" "/home/opam/.opam/4.14/bin/molenc_common.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.5.0.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_type_atoms.py" "/home/opam/.opam/4.14/bin/molenc_type_atoms.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.5.0.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.py" "/home/opam/.opam/4.14/bin/molenc_scan.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.5.0.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc.sh" "/home/opam/.opam/4.14/bin/molenc.sh" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.5.0.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.sh" "/home/opam/.opam/4.14/bin/molenc_scan.sh" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.5.0.0)
-> installed molenc.5.0.0
Done.
# To update the current shell environment, run: eval $(opam env)
2026-04-30 11:35.49 ---> saved as "943c9dd4bd05f55e3626c97abaf60bea8671a06eebc7e718318f6b55f0cebdbf"
Job succeeded
2026-04-30 11:35.58: Job succeeded