- github
- ocaml
- opam-repository
- c56e58
- compilers,4.14,dune.3.20.2,revdeps,molenc.11.4.0
(not at the head of any monitored branch or PR)
2025-09-03 22:18.56: New job: test molenc.11.4.0 with dune.3.20.2, using opam 2.3
from https://github.com/ocaml/opam-repository.git#refs/pull/28437/head (c56e58d25e43ce7dd35f9942ad32b42e22d608c9)
on debian-12-ocaml-4.14/amd64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/28437/head" && git reset --hard c56e58d2
git fetch origin master
git merge --no-edit 48e6fa91c818759730429373230507f2458bffc3
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-12-ocaml-4.14@sha256:4603dfe290f76ff9a2d24e81f3f31209452440f74fe71806d899fe199d10f678
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-2.3 /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn dune.3.20.2 3.20.2
RUN opam reinstall dune.3.20.2; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-12\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'dune.3.20.2' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN opam reinstall molenc.11.4.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-12\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'molenc.11.4.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN (opam reinstall --with-test molenc.11.4.0) || true
RUN opam reinstall --with-test --verbose molenc.11.4.0; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-12\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'molenc.11.4.0' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2025-09-03 22:18.56: Using cache hint "ocaml/opam:debian-12-ocaml-4.14@sha256:4603dfe290f76ff9a2d24e81f3f31209452440f74fe71806d899fe199d10f678-dune.3.20.2-molenc.11.4.0-c56e58d25e43ce7dd35f9942ad32b42e22d608c9"
2025-09-03 22:18.56: Using OBuilder spec:
((from ocaml/opam:debian-12-ocaml-4.14@sha256:4603dfe290f76ff9a2d24e81f3f31209452440f74fe71806d899fe199d10f678)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-2.3 /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "opam option solver=builtin-0install && opam config report"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn dune.3.20.2 3.20.2"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall dune.3.20.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'dune.3.20.2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall molenc.11.4.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'molenc.11.4.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (network host)
(shell "(opam reinstall --with-test molenc.11.4.0) || true"))
(run (shell "opam reinstall --with-test --verbose molenc.11.4.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'molenc.11.4.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2025-09-03 22:18.56: Waiting for resource in pool OCluster
2025-09-04 10:38.06: Waiting for worker…
2025-09-04 10:40.44: Got resource from pool OCluster
Building on odawa.caelum.ci.dev
All commits already cached
HEAD is now at 48e6fa91c8 Merge pull request #28440 from hannesm/align-git-kv-git-net-dev-repo
Merge made by the 'ort' strategy.
packages/chrome-trace/chrome-trace.3.20.2/opam | 41 ++++++++++++
.../dune-action-plugin.3.20.2/opam | 54 ++++++++++++++++
.../dune-build-info/dune-build-info.3.20.2/opam | 47 ++++++++++++++
.../dune-configurator.3.20.2/opam | 51 +++++++++++++++
packages/dune-glob/dune-glob.3.20.2/opam | 44 +++++++++++++
.../dune-private-libs.3.20.2/opam | 52 +++++++++++++++
packages/dune-rpc-lwt/dune-rpc-lwt.3.20.2/opam | 43 +++++++++++++
packages/dune-rpc/dune-rpc.3.20.2/opam | 46 ++++++++++++++
packages/dune-site/dune-site.3.20.2/opam | 39 ++++++++++++
packages/dune/dune.3.20.2/opam | 74 ++++++++++++++++++++++
packages/dyn/dyn.3.20.2/opam | 42 ++++++++++++
packages/ocamlc-loc/ocamlc-loc.3.20.2/opam | 45 +++++++++++++
packages/ordering/ordering.3.20.2/opam | 40 ++++++++++++
packages/stdune/stdune.3.20.2/opam | 46 ++++++++++++++
packages/xdg/xdg.3.20.2/opam | 41 ++++++++++++
15 files changed, 705 insertions(+)
create mode 100644 packages/chrome-trace/chrome-trace.3.20.2/opam
create mode 100644 packages/dune-action-plugin/dune-action-plugin.3.20.2/opam
create mode 100644 packages/dune-build-info/dune-build-info.3.20.2/opam
create mode 100644 packages/dune-configurator/dune-configurator.3.20.2/opam
create mode 100644 packages/dune-glob/dune-glob.3.20.2/opam
create mode 100644 packages/dune-private-libs/dune-private-libs.3.20.2/opam
create mode 100644 packages/dune-rpc-lwt/dune-rpc-lwt.3.20.2/opam
create mode 100644 packages/dune-rpc/dune-rpc.3.20.2/opam
create mode 100644 packages/dune-site/dune-site.3.20.2/opam
create mode 100644 packages/dune/dune.3.20.2/opam
create mode 100644 packages/dyn/dyn.3.20.2/opam
create mode 100644 packages/ocamlc-loc/ocamlc-loc.3.20.2/opam
create mode 100644 packages/ordering/ordering.3.20.2/opam
create mode 100644 packages/stdune/stdune.3.20.2/opam
create mode 100644 packages/xdg/xdg.3.20.2/opam
(from ocaml/opam:debian-12-ocaml-4.14@sha256:4603dfe290f76ff9a2d24e81f3f31209452440f74fe71806d899fe199d10f678)
2025-09-04 10:41.20 ---> using "77a40307c411f5d1823247ca3b8b3ea2aa56acde8c01fd84fb59cd0eebf33d78" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-2.3 /usr/bin/opam"))
2025-09-04 10:41.20 ---> using "c026694a7f8bbf828d61abaf1ba9ea717728e71cdd844e07de0a7a47bf374891" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This development version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Continue? [y/n] y
[NOTE] The 'jobs' option was reset, its value was 71 and its new value will vary according to the current number of cores on your machine. You can restore the fixed value using:
opam option jobs=71 --global
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2025-09-04 10:41.20 ---> using "1fcdc6aa00cef1b6c13f5ac5ea17ef3b8e8ee84bdcf4cec01b64e5dcf9a8851e" from cache
/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version 2.3.0 (35acd0c5abc5e66cdbd5be16ba77aa6c33a4c724)
# self-upgrade no
# system arch=x86_64 os=linux os-distribution=debian os-version=12
# solver builtin-0install
# install-criteria -changed,-count[avoid-version,solution]
# upgrade-criteria -count[avoid-version,solution]
# jobs 255
# repositories 1 (version-controlled)
# pinned 1 (version)
# current-switch 4.14
# invariant ["ocaml-base-compiler" {= "4.14.2"}]
# compiler-packages ocaml-base-compiler.4.14.2, ocaml-options-vanilla.1
# ocaml:native true
# ocaml:native-tools true
# ocaml:native-dynlink true
# ocaml:stubsdir /home/opam/.opam/4.14/lib/ocaml/stublibs:/home/opam/.opam/4.14/lib/ocaml
# ocaml:preinstalled false
# ocaml:compiler 4.14.2
2025-09-04 10:41.20 ---> using "2d46141becfbbbbbbe98c1384933b2bdb43bfeae47155579163d54a9d154d5d9" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2025-09-04 10:41.20 ---> using "967ac08931cb898a3361431f42e1141490c4262301076d051ed73170eaf25424" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2025-09-04 10:41.21 ---> using "c94c80755ee2b6b21028e6f1b0238bb710783ad1365abe725a5560b4002bc908" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2025-09-04 10:41.21 ---> using "4475aed4fb3f63fb51711edc14a1550417bec1fbeeda35e50af9a14a7c56f9c2" from cache
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian bookworm InRelease
- Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB]
- Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB]
- Get:4 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [277 kB]
- Fetched 380 kB in 0s (1212 kB/s)
- Reading package lists...
2025-09-04 10:41.21 ---> using "01b36b6b852c01cb468dc16f633ffec5a116bebc09b76dda91b15f4c7b50cb68" from cache
/home/opam: (run (shell "opam pin add -k version -yn dune.3.20.2 3.20.2"))
dune is now pinned to version 3.20.2
2025-09-04 10:41.21 ---> using "19c9422e2eb21e20e2287953d689ef1f5c42ccd6055b4cf8487665957d77577d" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall dune.3.20.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'dune.3.20.2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
dune.3.20.2 is not installed. Install it? [y/n] y
The following actions will be performed:
=== install 1 package
- install dune 3.20.2 (pinned)
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved dune.3.20.2 (cached)
-> installed dune.3.20.2
Done.
# To update the current shell environment, run: eval $(opam env)
2025-09-04 10:41.21 ---> using "b7cbbf5da597b225d6f3f7f2b6670f325ba39c8f0c1ba72b9afab4e6cc719b2c" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall molenc.11.4.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'molenc.11.4.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
molenc.11.4.0 is not installed. Install it? [y/n] y
The following actions will be performed:
=== install 46 packages
- install base v0.16.4 [required by owl]
- install base-bytes base [required by dokeysto]
- install batteries 3.9.0 [required by molenc]
- install bigarray-compat 1.1.0 [required by ctypes]
- install bst 7.1.0 [required by molenc]
- install camlp-streams 5.0.1 [required by batteries]
- install camltc 0.9.8 [required by dokeysto_camltc]
- install camlzip 1.13 [required by npy]
- install conf-autoconf 0.2 [required by cpu]
- install conf-bash 1 [required by camltc]
- install conf-graphviz 0.1 [required by molenc]
- install conf-openblas 0.2.2 [required by owl]
- install conf-pkg-config 4 [required by conf-zlib]
- install conf-python-3 9.0.0 [required by molenc]
- install conf-rdkit 1 [required by molenc]
- install conf-zlib 1 [required by camlzip]
- install cpm 12.2.0 [required by molenc]
- install cppo 1.8.0 [required by lwt]
- install cpu 2.0.0 [required by parany]
- install csexp 1.5.2 [required by dune-configurator]
- install ctypes 0.23.0 [required by owl]
- install dokeysto 4.0.1 [required by dokeysto_camltc]
- install dokeysto_camltc 4.0.0 [required by molenc]
- install dolog 4.0.0 [required by molenc]
- install dune-configurator 3.20.2 [required by owl]
- install extunix 0.4.4 [required by dokeysto]
- install integers 0.7.0 [required by ctypes]
- install logs 0.9.0 [required by camltc]
- install lwt 5.9.2 [required by camltc]
- install minicli 5.0.2 [required by molenc]
- install molenc 11.4.0
- install npy 0.0.9 [required by owl]
- install num 1.6 [required by batteries]
- install ocaml-compiler-libs v0.12.4 [required by ppxlib]
- install ocamlbuild 0.16.1 [required by logs]
- install ocamlfind 1.9.8 [required by batteries]
- install ocamlgraph 2.2.0 [required by molenc]
- install ocplib-endian 1.2 [required by lwt]
- install owl 1.2 [required by molenc]
- install owl-base 1.2 [required by owl]
- install parany 14.0.1 [required by molenc]
- install ppx_derivers 1.2.1 [required by ppxlib]
- install ppxlib 0.36.0 [required by extunix]
- install sexplib0 v0.16.0 [required by base]
- install stdlib-shims 0.3.0 [required by integers]
- install topkg 1.1.0 [required by logs]
The following system packages will first need to be installed:
autoconf graphviz liblapacke-dev libopenblas-dev librdkit-dev pkg-config python3 python3-rdkit zlib1g-dev
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "graphviz" "liblapacke-dev" "libopenblas-dev" "librdkit-dev" "pkg-config" "python3" "python3-rdkit" "zlib1g-dev"
- debconf: delaying package configuration, since apt-utils is not installed
- Selecting previously unselected package libpython3.11-minimal:amd64.
- (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 18747 files and directories currently installed.)
- Preparing to unpack .../libpython3.11-minimal_3.11.2-6+deb12u6_amd64.deb ...
- Unpacking libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ...
- Selecting previously unselected package python3.11-minimal.
- Preparing to unpack .../python3.11-minimal_3.11.2-6+deb12u6_amd64.deb ...
- Unpacking python3.11-minimal (3.11.2-6+deb12u6) ...
- Setting up libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ...
- Setting up python3.11-minimal (3.11.2-6+deb12u6) ...
- Selecting previously unselected package python3-minimal.
- (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19054 files and directories currently installed.)
- Preparing to unpack .../python3-minimal_3.11.2-1+b1_amd64.deb ...
- Unpacking python3-minimal (3.11.2-1+b1) ...
- Selecting previously unselected package media-types.
- Preparing to unpack .../media-types_10.0.0_all.deb ...
- Unpacking media-types (10.0.0) ...
- Selecting previously unselected package libpython3.11-stdlib:amd64.
- Preparing to unpack .../libpython3.11-stdlib_3.11.2-6+deb12u6_amd64.deb ...
- Unpacking libpython3.11-stdlib:amd64 (3.11.2-6+deb12u6) ...
- Selecting previously unselected package python3.11.
- Preparing to unpack .../python3.11_3.11.2-6+deb12u6_amd64.deb ...
- Unpacking python3.11 (3.11.2-6+deb12u6) ...
- Selecting previously unselected package libpython3-stdlib:amd64.
- Preparing to unpack .../libpython3-stdlib_3.11.2-1+b1_amd64.deb ...
- Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ...
- Setting up python3-minimal (3.11.2-1+b1) ...
- Selecting previously unselected package python3.
- (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19464 files and directories currently installed.)
- Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ...
- Unpacking python3 (3.11.2-1+b1) ...
- Selecting previously unselected package m4.
- Preparing to unpack .../01-m4_1.4.19-3_amd64.deb ...
- Unpacking m4 (1.4.19-3) ...
- Selecting previously unselected package autoconf.
- Preparing to unpack .../02-autoconf_2.71-3_all.deb ...
- Unpacking autoconf (2.71-3) ...
- Selecting previously unselected package autotools-dev.
- Preparing to unpack .../03-autotools-dev_20220109.1_all.deb ...
- Unpacking autotools-dev (20220109.1) ...
- Selecting previously unselected package automake.
- Preparing to unpack .../04-automake_1%3a1.16.5-1.3_all.deb ...
- Unpacking automake (1:1.16.5-1.3) ...
- Selecting previously unselected package fontconfig.
- Preparing to unpack .../05-fontconfig_2.14.1-4_amd64.deb ...
- Unpacking fontconfig (2.14.1-4) ...
- Selecting previously unselected package fonts-freefont-ttf.
- Preparing to unpack .../06-fonts-freefont-ttf_20120503-10_all.deb ...
- Unpacking fonts-freefont-ttf (20120503-10) ...
- Selecting previously unselected package fonts-liberation2.
- Preparing to unpack .../07-fonts-liberation2_2.1.5-1_all.deb ...
- Unpacking fonts-liberation2 (2.1.5-1) ...
- Selecting previously unselected package libann0.
- Preparing to unpack .../08-libann0_1.1.2+doc-9+b1_amd64.deb ...
- Unpacking libann0 (1.1.2+doc-9+b1) ...
- Selecting previously unselected package libcdt5:amd64.
- Preparing to unpack .../09-libcdt5_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking libcdt5:amd64 (2.42.2-7+deb12u1) ...
- Selecting previously unselected package libcgraph6:amd64.
- Preparing to unpack .../10-libcgraph6_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking libcgraph6:amd64 (2.42.2-7+deb12u1) ...
- Selecting previously unselected package libglib2.0-0:amd64.
- Preparing to unpack .../11-libglib2.0-0_2.74.6-2+deb12u6_amd64.deb ...
- Unpacking libglib2.0-0:amd64 (2.74.6-2+deb12u6) ...
- Selecting previously unselected package libgts-0.7-5:amd64.
- Preparing to unpack .../12-libgts-0.7-5_0.7.6+darcs121130-5+b1_amd64.deb ...
- Unpacking libgts-0.7-5:amd64 (0.7.6+darcs121130-5+b1) ...
- Selecting previously unselected package libpixman-1-0:amd64.
- Preparing to unpack .../13-libpixman-1-0_0.42.2-1_amd64.deb ...
- Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
- Selecting previously unselected package libxcb-render0:amd64.
- Preparing to unpack .../14-libxcb-render0_1.15-1_amd64.deb ...
- Unpacking libxcb-render0:amd64 (1.15-1) ...
- Selecting previously unselected package libxcb-shm0:amd64.
- Preparing to unpack .../15-libxcb-shm0_1.15-1_amd64.deb ...
- Unpacking libxcb-shm0:amd64 (1.15-1) ...
- Selecting previously unselected package libxrender1:amd64.
- Preparing to unpack .../16-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
- Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
- Selecting previously unselected package libcairo2:amd64.
- Preparing to unpack .../17-libcairo2_1.16.0-7_amd64.deb ...
- Unpacking libcairo2:amd64 (1.16.0-7) ...
- Selecting previously unselected package libltdl7:amd64.
- Preparing to unpack .../18-libltdl7_2.4.7-7~deb12u1_amd64.deb ...
- Unpacking libltdl7:amd64 (2.4.7-7~deb12u1) ...
- Selecting previously unselected package libfribidi0:amd64.
- Preparing to unpack .../19-libfribidi0_1.0.8-2.1_amd64.deb ...
- Unpacking libfribidi0:amd64 (1.0.8-2.1) ...
- Selecting previously unselected package libgraphite2-3:amd64.
- Preparing to unpack .../20-libgraphite2-3_1.3.14-1_amd64.deb ...
- Unpacking libgraphite2-3:amd64 (1.3.14-1) ...
- Selecting previously unselected package libharfbuzz0b:amd64.
- Preparing to unpack .../21-libharfbuzz0b_6.0.0+dfsg-3_amd64.deb ...
- Unpacking libharfbuzz0b:amd64 (6.0.0+dfsg-3) ...
- Selecting previously unselected package libthai-data.
- Preparing to unpack .../22-libthai-data_0.1.29-1_all.deb ...
- Unpacking libthai-data (0.1.29-1) ...
- Selecting previously unselected package libdatrie1:amd64.
- Preparing to unpack .../23-libdatrie1_0.2.13-2+b1_amd64.deb ...
- Unpacking libdatrie1:amd64 (0.2.13-2+b1) ...
- Selecting previously unselected package libthai0:amd64.
- Preparing to unpack .../24-libthai0_0.1.29-1_amd64.deb ...
- Unpacking libthai0:amd64 (0.1.29-1) ...
- Selecting previously unselected package libpango-1.0-0:amd64.
- Preparing to unpack .../25-libpango-1.0-0_1.50.12+ds-1_amd64.deb ...
- Unpacking libpango-1.0-0:amd64 (1.50.12+ds-1) ...
- Selecting previously unselected package libpangoft2-1.0-0:amd64.
- Preparing to unpack .../26-libpangoft2-1.0-0_1.50.12+ds-1_amd64.deb ...
- Unpacking libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ...
- Selecting previously unselected package libpangocairo-1.0-0:amd64.
- Preparing to unpack .../27-libpangocairo-1.0-0_1.50.12+ds-1_amd64.deb ...
- Unpacking libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ...
- Selecting previously unselected package libpathplan4:amd64.
- Preparing to unpack .../28-libpathplan4_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking libpathplan4:amd64 (2.42.2-7+deb12u1) ...
- Selecting previously unselected package libgvc6.
- Preparing to unpack .../29-libgvc6_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking libgvc6 (2.42.2-7+deb12u1) ...
- Selecting previously unselected package libgvpr2:amd64.
- Preparing to unpack .../30-libgvpr2_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking libgvpr2:amd64 (2.42.2-7+deb12u1) ...
- Selecting previously unselected package liblab-gamut1:amd64.
- Preparing to unpack .../31-liblab-gamut1_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking liblab-gamut1:amd64 (2.42.2-7+deb12u1) ...
- Selecting previously unselected package x11-common.
- Preparing to unpack .../32-x11-common_1%3a7.7+23_all.deb ...
- Unpacking x11-common (1:7.7+23) ...
- Selecting previously unselected package libice6:amd64.
- Preparing to unpack .../33-libice6_2%3a1.0.10-1_amd64.deb ...
- Unpacking libice6:amd64 (2:1.0.10-1) ...
- Selecting previously unselected package libsm6:amd64.
- Preparing to unpack .../34-libsm6_2%3a1.2.3-1_amd64.deb ...
- Unpacking libsm6:amd64 (2:1.2.3-1) ...
- Selecting previously unselected package libxt6:amd64.
- Preparing to unpack .../35-libxt6_1%3a1.2.1-1.1_amd64.deb ...
- Unpacking libxt6:amd64 (1:1.2.1-1.1) ...
- Selecting previously unselected package libxmu6:amd64.
- Preparing to unpack .../36-libxmu6_2%3a1.1.3-3_amd64.deb ...
- Unpacking libxmu6:amd64 (2:1.1.3-3) ...
- Selecting previously unselected package libxaw7:amd64.
- Preparing to unpack .../37-libxaw7_2%3a1.0.14-1_amd64.deb ...
- Unpacking libxaw7:amd64 (2:1.0.14-1) ...
- Selecting previously unselected package graphviz.
- Preparing to unpack .../38-graphviz_2.42.2-7+deb12u1_amd64.deb ...
- Unpacking graphviz (2.42.2-7+deb12u1) ...
- Selecting previously unselected package libblas3:amd64.
- Preparing to unpack .../39-libblas3_3.11.0-2_amd64.deb ...
- Unpacking libblas3:amd64 (3.11.0-2) ...
- Selecting previously unselected package libblas-dev:amd64.
- Preparing to unpack .../40-libblas-dev_3.11.0-2_amd64.deb ...
- Unpacking libblas-dev:amd64 (3.11.0-2) ...
- Selecting previously unselected package libboost-iostreams1.74.0:amd64.
- Preparing to unpack .../41-libboost-iostreams1.74.0_1.74.0+ds1-21_amd64.deb ...
- Unpacking libboost-iostreams1.74.0:amd64 (1.74.0+ds1-21) ...
- Selecting previously unselected package libboost-python1.74.0.
- Preparing to unpack .../42-libboost-python1.74.0_1.74.0+ds1-21_amd64.deb ...
- Unpacking libboost-python1.74.0 (1.74.0+ds1-21) ...
- Selecting previously unselected package libboost-serialization1.74.0:amd64.
- Preparing to unpack .../43-libboost-serialization1.74.0_1.74.0+ds1-21_amd64.deb ...
- Unpacking libboost-serialization1.74.0:amd64 (1.74.0+ds1-21) ...
- Selecting previously unselected package libcoordgen3:amd64.
- Preparing to unpack .../44-libcoordgen3_3.0.1-1_amd64.deb ...
- Unpacking libcoordgen3:amd64 (3.0.1-1) ...
- Selecting previously unselected package libgfortran5:amd64.
- Preparing to unpack .../45-libgfortran5_12.2.0-14+deb12u1_amd64.deb ...
- Unpacking libgfortran5:amd64 (12.2.0-14+deb12u1) ...
- Selecting previously unselected package libglib2.0-data.
- Preparing to unpack .../46-libglib2.0-data_2.74.6-2+deb12u6_all.deb ...
- Unpacking libglib2.0-data (2.74.6-2+deb12u6) ...
- Selecting previously unselected package libgts-bin.
- Preparing to unpack .../47-libgts-bin_0.7.6+darcs121130-5+b1_amd64.deb ...
- Unpacking libgts-bin (0.7.6+darcs121130-5+b1) ...
- Selecting previously unselected package libicu72:amd64.
- Preparing to unpack .../48-libicu72_72.1-3+deb12u1_amd64.deb ...
- Unpacking libicu72:amd64 (72.1-3+deb12u1) ...
- Selecting previously unselected package libopenblas0-pthread:amd64.
- Preparing to unpack .../49-libopenblas0-pthread_0.3.21+ds-4_amd64.deb ...
- Unpacking libopenblas0-pthread:amd64 (0.3.21+ds-4) ...
- Selecting previously unselected package liblapack3:amd64.
- Preparing to unpack .../50-liblapack3_3.11.0-2_amd64.deb ...
- Unpacking liblapack3:amd64 (3.11.0-2) ...
- Selecting previously unselected package libopenblas-pthread-dev:amd64.
- Preparing to unpack .../51-libopenblas-pthread-dev_0.3.21+ds-4_amd64.deb ...
- Unpacking libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ...
- Selecting previously unselected package liblapack-dev:amd64.
- Preparing to unpack .../52-liblapack-dev_3.11.0-2_amd64.deb ...
- Unpacking liblapack-dev:amd64 (3.11.0-2) ...
- Selecting previously unselected package libtmglib3:amd64.
- Preparing to unpack .../53-libtmglib3_3.11.0-2_amd64.deb ...
- Unpacking libtmglib3:amd64 (3.11.0-2) ...
- Selecting previously unselected package liblapacke:amd64.
- Preparing to unpack .../54-liblapacke_3.11.0-2_amd64.deb ...
- Unpacking liblapacke:amd64 (3.11.0-2) ...
- Selecting previously unselected package libtmglib-dev:amd64.
- Preparing to unpack .../55-libtmglib-dev_3.11.0-2_amd64.deb ...
- Unpacking libtmglib-dev:amd64 (3.11.0-2) ...
- Selecting previously unselected package liblapacke-dev:amd64.
- Preparing to unpack .../56-liblapacke-dev_3.11.0-2_amd64.deb ...
- Unpacking liblapacke-dev:amd64 (3.11.0-2) ...
- Selecting previously unselected package libmaeparser1:amd64.
- Preparing to unpack .../57-libmaeparser1_1.3.0-1_amd64.deb ...
- Unpacking libmaeparser1:amd64 (1.3.0-1) ...
- Selecting previously unselected package libopenblas0:amd64.
- Preparing to unpack .../58-libopenblas0_0.3.21+ds-4_amd64.deb ...
- Unpacking libopenblas0:amd64 (0.3.21+ds-4) ...
- Selecting previously unselected package libopenblas-dev:amd64.
- Preparing to unpack .../59-libopenblas-dev_0.3.21+ds-4_amd64.deb ...
- Unpacking libopenblas-dev:amd64 (0.3.21+ds-4) ...
- Selecting previously unselected package libpkgconf3:amd64.
- Preparing to unpack .../60-libpkgconf3_1.8.1-1_amd64.deb ...
- Unpacking libpkgconf3:amd64 (1.8.1-1) ...
- Selecting previously unselected package libpython3.11:amd64.
- Preparing to unpack .../61-libpython3.11_3.11.2-6+deb12u6_amd64.deb ...
- Unpacking libpython3.11:amd64 (3.11.2-6+deb12u6) ...
- Selecting previously unselected package librdkit1.
- Preparing to unpack .../62-librdkit1_202209.3-1_amd64.deb ...
- Unpacking librdkit1 (202209.3-1) ...
- Selecting previously unselected package librdkit-dev.
- Preparing to unpack .../63-librdkit-dev_202209.3-1_amd64.deb ...
- Unpacking librdkit-dev (202209.3-1) ...
- Selecting previously unselected package libxml2:amd64.
- Preparing to unpack .../64-libxml2_2.9.14+dfsg-1.3~deb12u4_amd64.deb ...
- Unpacking libxml2:amd64 (2.9.14+dfsg-1.3~deb12u4) ...
- Selecting previously unselected package pkgconf-bin.
- Preparing to unpack .../65-pkgconf-bin_1.8.1-1_amd64.deb ...
- Unpacking pkgconf-bin (1.8.1-1) ...
- Selecting previously unselected package pkgconf:amd64.
- Preparing to unpack .../66-pkgconf_1.8.1-1_amd64.deb ...
- Unpacking pkgconf:amd64 (1.8.1-1) ...
- Selecting previously unselected package pkg-config:amd64.
- Preparing to unpack .../67-pkg-config_1.8.1-1_amd64.deb ...
- Unpacking pkg-config:amd64 (1.8.1-1) ...
- Selecting previously unselected package python3-pkg-resources.
- Preparing to unpack .../68-python3-pkg-resources_66.1.1-1+deb12u1_all.deb ...
- Unpacking python3-pkg-resources (66.1.1-1+deb12u1) ...
- Selecting previously unselected package python3-numpy.
- Preparing to unpack .../69-python3-numpy_1%3a1.24.2-1+deb12u1_amd64.deb ...
- Unpacking python3-numpy (1:1.24.2-1+deb12u1) ...
- Selecting previously unselected package rdkit-data.
- Preparing to unpack .../70-rdkit-data_202209.3-1_all.deb ...
- Unpacking rdkit-data (202209.3-1) ...
- Selecting previously unselected package python3-rdkit.
- Preparing to unpack .../71-python3-rdkit_202209.3-1_amd64.deb ...
- Unpacking python3-rdkit (202209.3-1) ...
- Selecting previously unselected package shared-mime-info.
- Preparing to unpack .../72-shared-mime-info_2.2-1_amd64.deb ...
- Unpacking shared-mime-info (2.2-1) ...
- Selecting previously unselected package xdg-user-dirs.
- Preparing to unpack .../73-xdg-user-dirs_0.18-1_amd64.deb ...
- Unpacking xdg-user-dirs (0.18-1) ...
- Selecting previously unselected package zlib1g-dev:amd64.
- Preparing to unpack .../74-zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ...
- Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ...
- Setting up media-types (10.0.0) ...
- Setting up libgraphite2-3:amd64 (1.3.14-1) ...
- Setting up libpixman-1-0:amd64 (0.42.2-1) ...
- Setting up fontconfig (2.14.1-4) ...
- Regenerating fonts cache...
- done.
- Setting up libicu72:amd64 (72.1-3+deb12u1) ...
- Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
- Setting up libdatrie1:amd64 (0.2.13-2+b1) ...
- Setting up xdg-user-dirs (0.18-1) ...
- Setting up libxcb-render0:amd64 (1.15-1) ...
- Setting up libglib2.0-0:amd64 (2.74.6-2+deb12u6) ...
- No schema files found: doing nothing.
- Setting up libboost-iostreams1.74.0:amd64 (1.74.0+ds1-21) ...
- Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u6) ...
- Setting up liblab-gamut1:amd64 (2.42.2-7+deb12u1) ...
- Setting up x11-common (1:7.7+23) ...
- invoke-rc.d: could not determine current runlevel
- invoke-rc.d: policy-rc.d denied execution of restart.
- Setting up fonts-freefont-ttf (20120503-10) ...
- Setting up m4 (1.4.19-3) ...
- Setting up libxcb-shm0:amd64 (1.15-1) ...
- Setting up rdkit-data (202209.3-1) ...
- Setting up libcairo2:amd64 (1.16.0-7) ...
- Setting up libmaeparser1:amd64 (1.3.0-1) ...
- Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-5+b1) ...
- Setting up autotools-dev (20220109.1) ...
- Setting up libblas3:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libglib2.0-data (2.74.6-2+deb12u6) ...
- Setting up libpkgconf3:amd64 (1.8.1-1) ...
- Setting up fonts-liberation2 (2.1.5-1) ...
- Setting up libpathplan4:amd64 (2.42.2-7+deb12u1) ...
- Setting up libann0 (1.1.2+doc-9+b1) ...
- Setting up libfribidi0:amd64 (1.0.8-2.1) ...
- Setting up pkgconf-bin (1.8.1-1) ...
- Setting up libltdl7:amd64 (2.4.7-7~deb12u1) ...
- Setting up libgfortran5:amd64 (12.2.0-14+deb12u1) ...
- Setting up autoconf (2.71-3) ...
- Setting up libboost-serialization1.74.0:amd64 (1.74.0+ds1-21) ...
- Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ...
- Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ...
- Setting up libthai-data (0.1.29-1) ...
- Setting up libcdt5:amd64 (2.42.2-7+deb12u1) ...
- Setting up libcgraph6:amd64 (2.42.2-7+deb12u1) ...
- Setting up libcoordgen3:amd64 (3.0.1-1) ...
- Setting up libboost-python1.74.0 (1.74.0+ds1-21) ...
- Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u4) ...
- Setting up libblas-dev:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
- Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ...
- Setting up automake (1:1.16.5-1.3) ...
- update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
- Setting up libgts-bin (0.7.6+darcs121130-5+b1) ...
- Setting up python3.11 (3.11.2-6+deb12u6) ...
- Setting up libice6:amd64 (2:1.0.10-1) ...
- Setting up liblapack3:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode
- Setting up libpython3.11:amd64 (3.11.2-6+deb12u6) ...
- Setting up librdkit1 (202209.3-1) ...
- Setting up python3 (3.11.2-1+b1) ...
- running python rtupdate hooks for python3.11...
- running python post-rtupdate hooks for python3.11...
- Setting up pkgconf:amd64 (1.8.1-1) ...
- Setting up libthai0:amd64 (0.1.29-1) ...
- Setting up libtmglib3:amd64 (3.11.0-2) ...
- Setting up shared-mime-info (2.2-1) ...
- Setting up liblapack-dev:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- Setting up librdkit-dev (202209.3-1) ...
- Setting up pkg-config:amd64 (1.8.1-1) ...
- Setting up libgvpr2:amd64 (2.42.2-7+deb12u1) ...
- Setting up libopenblas0:amd64 (0.3.21+ds-4) ...
- Setting up liblapacke:amd64 (3.11.0-2) ...
- Setting up libtmglib-dev:amd64 (3.11.0-2) ...
- Setting up libsm6:amd64 (2:1.2.3-1) ...
- Setting up python3-pkg-resources (66.1.1-1+deb12u1) ...
- Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
- update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode
- Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ...
- Setting up liblapacke-dev:amd64 (3.11.0-2) ...
- Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ...
- Setting up libxt6:amd64 (1:1.2.1-1.1) ...
- Setting up python3-numpy (1:1.24.2-1+deb12u1) ...
- Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ...
- Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ...
- Setting up libxmu6:amd64 (2:1.1.3-3) ...
- Setting up libxaw7:amd64 (2:1.0.14-1) ...
- Setting up python3-rdkit (202209.3-1) ...
- Setting up libgvc6 (2.42.2-7+deb12u1) ...
- Setting up graphviz (2.42.2-7+deb12u1) ...
- Processing triggers for libc-bin (2.36-9+deb12u10) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved base.v0.16.4 (cached)
-> retrieved batteries.3.9.0 (cached)
-> retrieved bigarray-compat.1.1.0 (cached)
-> retrieved bst.7.1.0 (cached)
-> retrieved camlp-streams.5.0.1 (cached)
-> retrieved camltc.0.9.8 (cached)
-> retrieved camlzip.1.13 (cached)
-> retrieved conf-openblas.0.2.2 (cached)
-> retrieved conf-python-3.9.0.0 (cached)
-> retrieved conf-rdkit.1 (cached)
-> retrieved cpm.12.2.0 (cached)
-> installed conf-autoconf.0.2
-> retrieved cppo.1.8.0 (cached)
-> retrieved cpu.2.0.0 (cached)
-> installed conf-bash.1
-> retrieved csexp.1.5.2 (cached)
-> installed bigarray-compat.1.1.0
-> installed conf-graphviz.0.1
-> installed conf-pkg-config.4
-> installed conf-python-3.9.0.0
-> retrieved ctypes.0.23.0 (cached)
-> installed camlp-streams.5.0.1
-> installed conf-zlib.1
-> retrieved dokeysto.4.0.1 (cached)
-> retrieved dokeysto_camltc.4.0.0 (cached)
-> retrieved dolog.4.0.0 (cached)
-> installed conf-rdkit.1
-> installed conf-openblas.0.2.2
-> installed csexp.1.5.2
-> installed dolog.4.0.0
-> retrieved dune-configurator.3.20.2 (cached)
-> installed cppo.1.8.0
-> retrieved extunix.0.4.4 (cached)
-> retrieved integers.0.7.0 (cached)
-> retrieved logs.0.9.0 (cached)
-> retrieved lwt.5.9.2 (cached)
-> retrieved minicli.5.0.2 (cached)
-> retrieved molenc.11.4.0 (cached)
-> retrieved npy.0.0.9 (cached)
-> retrieved num.1.6 (cached)
-> retrieved ocaml-compiler-libs.v0.12.4 (cached)
-> installed cpu.2.0.0
-> retrieved ocamlbuild.0.16.1 (cached)
-> retrieved ocamlfind.1.9.8 (cached)
-> installed minicli.5.0.2
-> retrieved ocamlgraph.2.2.0 (cached)
-> retrieved ocplib-endian.1.2 (cached)
-> installed ocaml-compiler-libs.v0.12.4
-> installed dune-configurator.3.20.2
-> installed num.1.6
-> retrieved owl.1.2, owl-base.1.2 (cached)
-> installed ocamlgraph.2.2.0
-> retrieved parany.14.0.1 (cached)
-> retrieved ppx_derivers.1.2.1 (cached)
-> retrieved ppxlib.0.36.0 (cached)
-> installed ocamlfind.1.9.8
-> installed base-bytes.base
-> installed ocamlbuild.0.16.1
-> installed parany.14.0.1
-> installed ppx_derivers.1.2.1
-> retrieved sexplib0.v0.16.0 (cached)
-> retrieved stdlib-shims.0.3.0 (cached)
-> retrieved topkg.1.1.0 (cached)
-> installed stdlib-shims.0.3.0
-> installed ocplib-endian.1.2
-> installed sexplib0.v0.16.0
-> installed camlzip.1.13
-> installed integers.0.7.0
-> installed npy.0.0.9
-> installed owl-base.1.2
-> installed lwt.5.9.2
-> installed batteries.3.9.0
-> installed bst.7.1.0
-> installed cpm.12.2.0
-> installed topkg.1.1.0
-> installed base.v0.16.4
-> installed logs.0.9.0
-> installed ctypes.0.23.0
-> installed camltc.0.9.8
-> installed ppxlib.0.36.0
-> installed extunix.0.4.4
-> installed dokeysto.4.0.1
-> installed dokeysto_camltc.4.0.0
-> installed owl.1.2
-> installed molenc.11.4.0
Done.
# To update the current shell environment, run: eval $(opam env)
2025-09-04 10:42.53 ---> saved as "d81e14d88c6174b2debea5d491a1f5ff67cd964635a6ff9677bc5690481a732f"
/home/opam: (run (network host)
(shell "(opam reinstall --with-test molenc.11.4.0) || true"))
The following actions will be performed:
=== recompile 1 package
- recompile molenc 11.4.0
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved molenc.11.4.0 (https://opam.ocaml.org/cache)
-> removed molenc.11.4.0
-> installed molenc.11.4.0
Done.
# To update the current shell environment, run: eval $(opam env)
2025-09-04 10:43.00 ---> saved as "476e9d5664a14b52392f33f3b14e9cd62380bafcb19b8caf01cafc27b7c24d57"
/home/opam: (run (shell "opam reinstall --with-test --verbose molenc.11.4.0;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'molenc.11.4.0' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
The following actions will be performed:
=== recompile 1 package
- recompile molenc 11.4.0
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/4: [molenc.11.4.0: extract]
-> retrieved molenc.11.4.0 (cached)
Processing 2/4: [molenc: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "molenc" "-j" "255" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
-> compiled molenc.11.4.0
-> removed molenc.11.4.0
Processing 4/4: [molenc: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc.sh" "/home/opam/.opam/4.14/bin/molenc.sh" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_common.py" "/home/opam/.opam/4.14/bin/molenc_common.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_lizard.py" "/home/opam/.opam/4.14/bin/molenc_lizard.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_scan.py" "/home/opam/.opam/4.14/bin/molenc_scan.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/molenc_type_atoms.py" "/home/opam/.opam/4.14/bin/molenc_type_atoms.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/smi2png.py" "/home/opam/.opam/4.14/bin/molenc_smi2png.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.11.4.0)
-> installed molenc.11.4.0
Done.
# To update the current shell environment, run: eval $(opam env)
2025-09-04 10:43.07 ---> saved as "9ea18da4109263cd1cebe2b60208dbe165cb19af897588c7106e49289bd64699"
Job succeeded
2025-09-04 10:43.13: Job succeeded