- github
- ocaml
- opam-repository
- c715a9
- compilers,4.14,qcheck-ounit.0.26,revdeps,lbvs_consent.2.1.1
(not at the head of any monitored branch or PR)
2025-07-08 20:22.24: New job: test lbvs_consent.2.1.1 with qcheck-ounit.0.26, using opam 2.3
from https://github.com/ocaml/opam-repository.git#refs/pull/28148/head (c715a95fe87d4397d1f0658b2ae5acd528de705e)
on debian-12-ocaml-4.14/amd64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/28148/head" && git reset --hard c715a95f
git fetch origin master
git merge --no-edit 11a53009bd75423d805636ff9384bf7cce8b0a9a
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-12-ocaml-4.14@sha256:143576507f5c7de2dab1a2bc4748de0e63d8dc0c9524de1e8ea0b273ddd270ab
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-2.3 /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn qcheck-ounit.0.26 0.26
RUN opam reinstall qcheck-ounit.0.26; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-12\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'qcheck-ounit.0.26' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN opam reinstall lbvs_consent.2.1.1; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-12\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'lbvs_consent.2.1.1' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN (opam reinstall --with-test lbvs_consent.2.1.1) || true
RUN opam reinstall --with-test --verbose lbvs_consent.2.1.1; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-12\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'lbvs_consent.2.1.1' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2025-07-08 20:22.24: Using cache hint "ocaml/opam:debian-12-ocaml-4.14@sha256:143576507f5c7de2dab1a2bc4748de0e63d8dc0c9524de1e8ea0b273ddd270ab-qcheck-ounit.0.26-lbvs_consent.2.1.1-c715a95fe87d4397d1f0658b2ae5acd528de705e"
2025-07-08 20:22.24: Using OBuilder spec:
((from ocaml/opam:debian-12-ocaml-4.14@sha256:143576507f5c7de2dab1a2bc4748de0e63d8dc0c9524de1e8ea0b273ddd270ab)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-2.3 /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "opam option solver=builtin-0install && opam config report"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn qcheck-ounit.0.26 0.26"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall qcheck-ounit.0.26;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'qcheck-ounit.0.26' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall lbvs_consent.2.1.1;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lbvs_consent.2.1.1' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (network host)
(shell "(opam reinstall --with-test lbvs_consent.2.1.1) || true"))
(run (shell "opam reinstall --with-test --verbose lbvs_consent.2.1.1;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lbvs_consent.2.1.1' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2025-07-08 20:22.24: Waiting for resource in pool OCluster
2025-07-08 20:22.56: Waiting for worker…
2025-07-08 20:24.26: Got resource from pool OCluster
Building on laodoke.caelum.ci.dev
All commits already cached
Updating files: 72% (12873/17825)
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Updating files: 100% (17825/17825), done.
HEAD is now at 11a53009bd Merge pull request #27805 from fccm2/conf-gegl
Updating 11a53009bd..c715a95fe8
Fast-forward
packages/qcheck-alcotest/qcheck-alcotest.0.26/opam | 37 +++++++++++++++++++
packages/qcheck-core/qcheck-core.0.26/opam | 38 ++++++++++++++++++++
packages/qcheck-ounit/qcheck-ounit.0.26/opam | 37 +++++++++++++++++++
packages/qcheck/qcheck.0.26/opam | 42 ++++++++++++++++++++++
4 files changed, 154 insertions(+)
create mode 100644 packages/qcheck-alcotest/qcheck-alcotest.0.26/opam
create mode 100644 packages/qcheck-core/qcheck-core.0.26/opam
create mode 100644 packages/qcheck-ounit/qcheck-ounit.0.26/opam
create mode 100644 packages/qcheck/qcheck.0.26/opam
(from ocaml/opam:debian-12-ocaml-4.14@sha256:143576507f5c7de2dab1a2bc4748de0e63d8dc0c9524de1e8ea0b273ddd270ab)
Unable to find image 'ocaml/opam:debian-12-ocaml-4.14@sha256:143576507f5c7de2dab1a2bc4748de0e63d8dc0c9524de1e8ea0b273ddd270ab' locally
docker.io/ocaml/opam@sha256:143576507f5c7de2dab1a2bc4748de0e63d8dc0c9524de1e8ea0b273ddd270ab: Pulling from ocaml/opam
a304af663f1a: Already exists
8ed16bb8b84e: Pulling fs layer
335dc0a99bb8: Pulling fs layer
8aac4d9dd913: Pulling fs layer
dd17a8488c63: Pulling fs layer
335dc0a99bb8: Waiting
8aac4d9dd913: Waiting
dd17a8488c63: Waiting
335dc0a99bb8: Download complete
8aac4d9dd913: Verifying Checksum
8aac4d9dd913: Download complete
dd17a8488c63: Download complete
8ed16bb8b84e: Verifying Checksum
8ed16bb8b84e: Download complete
8ed16bb8b84e: Pull complete
335dc0a99bb8: Pull complete
8aac4d9dd913: Pull complete
dd17a8488c63: Pull complete
Digest: sha256:143576507f5c7de2dab1a2bc4748de0e63d8dc0c9524de1e8ea0b273ddd270ab
Status: Downloaded newer image for ocaml/opam@sha256:143576507f5c7de2dab1a2bc4748de0e63d8dc0c9524de1e8ea0b273ddd270ab
2025-07-08 20:25.18 ---> using "cbce109115830ce8e290fcb66720c8f15adbd56f7256c117251ab82bc5715165" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-2.3 /usr/bin/opam"))
2025-07-08 20:25.18 ---> using "859f467b8f1e0997453778978cb05314781fcf229a7a46a3e2828bd1d8ec2d14" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This development version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Continue? [y/n] y
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2025-07-08 20:25.18 ---> using "65b30b61870eb9a225634d1fd8d6da8812c6a382d9e1c357506f34e87afd200b" from cache
/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version 2.3.0 (35acd0c5abc5e66cdbd5be16ba77aa6c33a4c724)
# self-upgrade no
# system arch=x86_64 os=linux os-distribution=debian os-version=12
# solver builtin-0install
# install-criteria -changed,-count[avoid-version,solution]
# upgrade-criteria -count[avoid-version,solution]
# jobs 71
# repositories 1 (version-controlled)
# pinned 1 (version)
# current-switch 4.14
# invariant ["ocaml-base-compiler" {= "4.14.2"}]
# compiler-packages ocaml-base-compiler.4.14.2, ocaml-options-vanilla.1
# ocaml:native true
# ocaml:native-tools true
# ocaml:native-dynlink true
# ocaml:stubsdir /home/opam/.opam/4.14/lib/ocaml/stublibs:/home/opam/.opam/4.14/lib/ocaml
# ocaml:preinstalled false
# ocaml:compiler 4.14.2
2025-07-08 20:25.18 ---> using "7b77f5c2c4be7cc4a239111e315b4dceecb1805f8f7c4dfe948fd7a5daead8a6" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2025-07-08 20:25.18 ---> using "38b75597606ef9e6851c1727ab267ec48baaf3349adaf4a26ef88742d1f9a941" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2025-07-08 20:25.20 ---> using "e5e0ad7e6732f1c94a1d4149243a5b40298927f8a5e74f8fd4614b112917b51f" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2025-07-08 20:25.20 ---> using "f66140815209defa9a14523460172baf42b9ba4b4cf6a360c62bb479344a5585" from cache
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian bookworm InRelease
- Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB]
- Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB]
- Get:4 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [272 kB]
- Fetched 375 kB in 0s (1042 kB/s)
- Reading package lists...
-
2025-07-08 20:25.20 ---> using "80fa3a76c0c8ac55be27390fc6c3ca2a95f9d1d9bb66d1a0dac432480b33e126" from cache
/home/opam: (run (shell "opam pin add -k version -yn qcheck-ounit.0.26 0.26"))
qcheck-ounit is now pinned to version 0.26
2025-07-08 20:25.20 ---> using "4035fea9c9b32c5664760068c97a61a67c4a07f157e9b43d70ade187343e6eeb" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall qcheck-ounit.0.26;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'qcheck-ounit.0.26' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
qcheck-ounit.0.26 is not installed. Install it? [y/n] y
The following actions will be performed:
=== install 6 packages
- install dune 3.19.1 [required by qcheck-ounit]
- install ounit2 2.2.7 [required by qcheck-ounit]
- install qcheck-core 0.26 [required by qcheck-ounit]
- install qcheck-ounit 0.26 (pinned)
- install seq base [required by ounit2]
- install stdlib-shims 0.3.0 [required by ounit2]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved dune.3.19.1 (cached)
-> retrieved ounit2.2.2.7 (cached)
-> retrieved qcheck-core.0.26, qcheck-ounit.0.26 (cached)
-> retrieved seq.base (cached)
-> installed seq.base
-> retrieved stdlib-shims.0.3.0 (cached)
-> installed dune.3.19.1
-> installed stdlib-shims.0.3.0
-> installed ounit2.2.2.7
-> installed qcheck-core.0.26
-> installed qcheck-ounit.0.26
Done.
# To update the current shell environment, run: eval $(opam env)
2025-07-08 20:25.56 ---> saved as "bbfbef5f7c86c4287b075a6172fcaabadf3ca511408ad98f1d6b390e0c80ef71"
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall lbvs_consent.2.1.1;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lbvs_consent.2.1.1' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
lbvs_consent.2.1.1 is not installed. Install it? [y/n] y
The following actions will be performed:
=== install 38 packages
- install base-bytes base [required by dokeysto]
- install batteries 3.9.0 [required by lbvs_consent]
- install bitv 2.0 [required by lbvs_consent]
- install camlp-streams 5.0.1 [required by batteries]
- install camltc 0.9.8 [required by dokeysto_camltc]
- install camlzip 1.13 [required by lbvs_consent]
- install conf-bash 1 [required by camltc]
- install conf-boost 1 [required by lbvs_consent]
- install conf-openbabel 0.1 [required by lbvs_consent]
- install conf-pkg-config 4 [required by lbvs_consent]
- install conf-python-3 9.0.0 [required by lbvs_consent]
- install conf-rdkit 1 [required by lbvs_consent]
- install conf-zlib 1 [required by camlzip]
- install cpm 12.2.0 [required by lbvs_consent]
- install cppo 1.8.0 [required by lwt]
- install csexp 1.5.2 [required by dune-configurator]
- install dokeysto 4.0.1 [required by dokeysto_camltc]
- install dokeysto_camltc 4.0.0 [required by lbvs_consent]
- install dolog 4.0.0 [required by lbvs_consent]
- install dune-configurator 3.19.1 [required by parmap]
- install extunix 0.4.4 [required by dokeysto]
- install lbvs_consent 2.1.1
- install logs 0.8.0 [required by camltc]
- install lwt 5.9.1 [required by camltc]
- install minicli 5.0.2 [required by lbvs_consent]
- install minivpt 2.0.0 [required by lbvs_consent]
- install num 1.6 [required by batteries]
- install obuild 0.1.11 [required by minivpt]
- install ocaml-compiler-libs v0.12.4 [required by ppxlib]
- install ocamlbuild 0.16.1 [required by logs]
- install ocamlfind 1.9.8 [required by camlzip, batteries, minivpt]
- install ocplib-endian 1.2 [required by lwt]
- install parmap 1.2.5 [required by lbvs_consent]
- install ppx_derivers 1.2.1 [required by ppxlib]
- install ppxlib 0.36.0 [required by extunix]
- install qcheck 0.26 [required by lbvs_consent]
- install sexplib0 v0.17.0 [required by ppxlib]
- install topkg 1.0.8 [required by logs]
The following system packages will first need to be installed:
libboost-dev libopenbabel-dev librdkit-dev pkg-config python3 python3-rdkit zlib1g-dev
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "libboost-dev" "libopenbabel-dev" "librdkit-dev" "pkg-config" "python3" "python3-rdkit" "zlib1g-dev"
- debconf: delaying package configuration, since apt-utils is not installed
- Selecting previously unselected package libpython3.11-minimal:amd64.
- (Reading database ...
(Reading database ... 5%
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(Reading database ... 18747 files and directories currently installed.)
- Preparing to unpack .../libpython3.11-minimal_3.11.2-6+deb12u6_amd64.deb ...
- Unpacking libpython3.11-minimal:amd64 (3.11.2-6+deb12u6) ...
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- Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ...
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- Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u6) ...
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- Setting up libmaeparser1:amd64 (1.3.0-1) ...
- Setting up libblas3:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libpkgconf3:amd64 (1.8.1-1) ...
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- Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u2) ...
- Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ...
- Setting up libinchi1 (1.03+dfsg-4+b2) ...
- Setting up python3.11 (3.11.2-6+deb12u6) ...
- Setting up liblapack3:amd64 (3.11.0-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up libpython3.11:amd64 (3.11.2-6+deb12u6) ...
- Setting up librdkit1 (202209.3-1) ...
- Setting up libopenbabel7 (3.1.1+dfsg-9+b3) ...
- Setting up python3 (3.11.2-1+b1) ...
- running python rtupdate hooks for python3.11...
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- Setting up pkgconf:amd64 (1.8.1-1) ...
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- Setting up python3-numpy (1:1.24.2-1+deb12u1) ...
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- Processing triggers for libc-bin (2.36-9+deb12u10) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved batteries.3.9.0 (cached)
-> retrieved bitv.2.0 (cached)
-> retrieved camlp-streams.5.0.1 (cached)
-> retrieved camltc.0.9.8 (cached)
-> retrieved camlzip.1.13 (cached)
-> retrieved conf-python-3.9.0.0 (cached)
-> retrieved conf-rdkit.1 (cached)
-> installed conf-boost.1
-> retrieved cpm.12.2.0 (cached)
-> installed conf-bash.1
-> retrieved cppo.1.8.0 (cached)
-> installed conf-pkg-config.4
-> installed conf-python-3.9.0.0
-> retrieved csexp.1.5.2 (cached)
-> retrieved dokeysto.4.0.1 (cached)
-> retrieved dokeysto_camltc.4.0.0 (cached)
-> installed conf-openbabel.0.1
-> installed conf-zlib.1
-> retrieved dolog.4.0.0 (cached)
-> installed conf-rdkit.1
-> installed camlp-streams.5.0.1
-> installed bitv.2.0
-> installed csexp.1.5.2
-> installed dolog.4.0.0
-> retrieved dune-configurator.3.19.1 (cached)
-> installed cppo.1.8.0
-> retrieved extunix.0.4.4 (cached)
-> retrieved lbvs_consent.2.1.1 (cached)
-> retrieved logs.0.8.0 (cached)
-> retrieved lwt.5.9.1 (cached)
-> retrieved minicli.5.0.2 (cached)
-> retrieved minivpt.2.0.0 (cached)
-> retrieved num.1.6 (cached)
-> retrieved obuild.0.1.11 (cached)
-> retrieved ocaml-compiler-libs.v0.12.4 (cached)
-> retrieved ocamlbuild.0.16.1 (cached)
-> retrieved ocamlfind.1.9.8 (cached)
-> retrieved ocplib-endian.1.2 (cached)
-> retrieved parmap.1.2.5 (cached)
-> retrieved ppx_derivers.1.2.1 (cached)
-> retrieved ppxlib.0.36.0 (cached)
-> installed ppx_derivers.1.2.1
-> retrieved qcheck.0.26 (cached)
-> retrieved sexplib0.v0.17.0 (cached)
-> installed minicli.5.0.2
-> retrieved topkg.1.0.8 (cached)
-> installed qcheck.0.26
-> installed sexplib0.v0.17.0
-> installed ocaml-compiler-libs.v0.12.4
-> installed dune-configurator.3.19.1
-> installed num.1.6
-> installed parmap.1.2.5
-> installed ocamlfind.1.9.8
-> installed base-bytes.base
-> installed ocplib-endian.1.2
-> installed camlzip.1.13
-> installed ocamlbuild.0.16.1
-> installed lwt.5.9.1
-> installed obuild.0.1.11
-> installed minivpt.2.0.0
-> installed topkg.1.0.8
-> installed batteries.3.9.0
-> installed cpm.12.2.0
-> installed logs.0.8.0
-> installed ppxlib.0.36.0
-> installed camltc.0.9.8
-> installed extunix.0.4.4
-> installed dokeysto.4.0.1
-> installed dokeysto_camltc.4.0.0
-> installed lbvs_consent.2.1.1
Done.
# To update the current shell environment, run: eval $(opam env)
2025-07-08 20:29.54 ---> saved as "03b5e557ef178555bf01a2b88e1827d6aa998093f4dae8ef7447db6166e70065"
/home/opam: (run (network host)
(shell "(opam reinstall --with-test lbvs_consent.2.1.1) || true"))
The following actions will be performed:
=== recompile 1 package
- recompile lbvs_consent 2.1.1
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved lbvs_consent.2.1.1 (https://opam.ocaml.org/cache)
-> removed lbvs_consent.2.1.1
-> installed lbvs_consent.2.1.1
Done.
# To update the current shell environment, run: eval $(opam env)
2025-07-08 20:30.12 ---> saved as "a5610428301e04a1978305df0464d16437844a6ca72d42af96dfcb2c3a5ae7a1"
/home/opam: (run (shell "opam reinstall --with-test --verbose lbvs_consent.2.1.1;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-12\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lbvs_consent.2.1.1' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
The following actions will be performed:
=== recompile 1 package
- recompile lbvs_consent 2.1.1
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/4: [lbvs_consent.2.1.1: extract]
-> retrieved lbvs_consent.2.1.1 (cached)
[lbvs_consent: patch] applying makefile.patch
Processing 2/4: [lbvs_consent: patch]
Processing 2/4: [lbvs_consent: make obmaccs]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "make" "obmaccs" (CWD=/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.1)
- cd src; make
- make[1]: Entering directory '/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.1/src'
- c++ -W -Wall `pkg-config --silence-errors --cflags openbabel-2.0 || pkg-config --cflags openbabel-3` ob_maccs.cpp \
- -o lbvs_consent_ob_maccs `pkg-config --silence-errors --libs openbabel-2.0 || pkg-config --libs openbabel-3` -Wl,-R/usr/lib
- In file included from /usr/include/openbabel3/openbabel/fingerprint.h:28,
- from ob_maccs.cpp:1:
- /usr/include/openbabel3/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
- 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/c++/12/bits/stl_tree.h:65,
- from /usr/include/c++/12/map:60,
- from /usr/include/openbabel3/openbabel/fingerprint.h:23:
- /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
- 131 | struct binary_function
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/openbabel3/openbabel/mol.h:48,
- from ob_maccs.cpp:2:
- /usr/include/openbabel3/openbabel/base.h: In member function 'virtual const char* OpenBabel::OBBase::GetTitle(bool) const':
- /usr/include/openbabel3/openbabel/base.h:286:49: warning: unused parameter 'replaceNewlines' [-Wunused-parameter]
- 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";}
- | ^
- /usr/include/openbabel3/openbabel/base.h:37:20: note: in definition of macro 'UNUSED'
- 37 | # define UNUSED(x) x
- | ^
- make[1]: Leaving directory '/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.1/src'
Processing 2/4: [lbvs_consent: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "lbvs_consent" "-j" "71" (CWD=/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.1)
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/.lbvs_consent.objs/byte -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bitv -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/cpm -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/minivpt -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -I /home/opam/.opam/4.14/lib/parmap -I /home/opam/.opam/4.14/lib/zip -no-alias-deps -open Lbvs_consent -o src/.lbvs_consent.objs/byte/lbvs_consent__MyList.cmo -c -impl src/myList.ml)
- File "src/myList.ml", line 51, characters 13-31:
- 51 | Array.sort Pervasives.compare xs;
- ^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Stdlib.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- File "src/myList.ml", line 64, characters 13-31:
- 64 | Array.sort Pervasives.compare xs;
- ^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Stdlib.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- File "src/myList.ml", line 193, characters 14-30:
- 193 | map of_str (BatString.nsplit s' ~by:";")
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/.lbvs_consent.objs/byte -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bitv -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/cpm -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/minivpt -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -I /home/opam/.opam/4.14/lib/parmap -I /home/opam/.opam/4.14/lib/zip -no-alias-deps -open Lbvs_consent -o src/.lbvs_consent.objs/byte/lbvs_consent__MyIntSet.cmo -c -impl src/myIntSet.ml)
- File "src/myIntSet.ml", line 22, characters 20-36:
- 22 | let int_strings = BatString.nsplit ~by:";" chopped in
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlopt.opt -w -40 -g -I src/.lbvs_consent.objs/byte -I src/.lbvs_consent.objs/native -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bitv -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/cpm -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/minivpt -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -I /home/opam/.opam/4.14/lib/parmap -I /home/opam/.opam/4.14/lib/zip -intf-suffix .ml -no-alias-deps -open Lbvs_consent -o src/.lbvs_consent.objs/native/lbvs_consent__MyList.cmx -c -impl src/myList.ml)
- File "src/myList.ml", line 51, characters 13-31:
- 51 | Array.sort Pervasives.compare xs;
- ^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Stdlib.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- File "src/myList.ml", line 64, characters 13-31:
- 64 | Array.sort Pervasives.compare xs;
- ^^^^^^^^^^^^^^^^^^
- Alert deprecated: module Stdlib.Pervasives
- Use Stdlib instead.
-
- If you need to stay compatible with OCaml < 4.07, you can use the
- stdlib-shims library: https://github.com/ocaml/stdlib-shims
- File "src/myList.ml", line 193, characters 14-30:
- 193 | map of_str (BatString.nsplit s' ~by:";")
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlopt.opt -w -40 -g -I src/.lbvs_consent.objs/byte -I src/.lbvs_consent.objs/native -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bitv -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/cpm -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/minivpt -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -I /home/opam/.opam/4.14/lib/parmap -I /home/opam/.opam/4.14/lib/zip -intf-suffix .ml -no-alias-deps -open Lbvs_consent -o src/.lbvs_consent.objs/native/lbvs_consent__MyIntSet.cmx -c -impl src/myIntSet.ml)
- File "src/myIntSet.ml", line 22, characters 20-36:
- 22 | let int_strings = BatString.nsplit ~by:";" chopped in
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/.mol_get.eobjs/byte -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bitv -I /home/opam/.opam/4.14/lib/bytes -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/camltc -I /home/opam/.opam/4.14/lib/camltc/tc -I /home/opam/.opam/4.14/lib/cpm -I /home/opam/.opam/4.14/lib/dokeysto -I /home/opam/.opam/4.14/lib/dokeysto_camltc -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/extunix -I /home/opam/.opam/4.14/lib/logs -I /home/opam/.opam/4.14/lib/logs/lwt -I /home/opam/.opam/4.14/lib/lwt -I /home/opam/.opam/4.14/lib/lwt/unix -I /home/opam/.opam/4.14/lib/minicli -I /home/opam/.opam/4.14/lib/minivpt -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -I /home/opam/.opam/4.14/lib/ocplib-endian -I /home/opam/.opam/4.14/lib/ocplib-endian/bigstring -I /home/opam/.opam/4.14/lib/parmap -I /home/opam/.opam/4.14/lib/zip -I src/.lbvs_consent.objs/byte -no-alias-deps -o src/.mol_get.eobjs/byte/mol_get.cmo -c -impl src/mol_get.ml)
- File "src/mol_get.ml", line 77, characters 22-38:
- 77 | | On_cli names -> BatString.nsplit names ~by:","
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
- (cd _build/default && /home/opam/.opam/4.14/bin/ocamlopt.opt -w -40 -g -I src/.mol_get.eobjs/byte -I src/.mol_get.eobjs/native -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bitv -I /home/opam/.opam/4.14/lib/bytes -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/camltc -I /home/opam/.opam/4.14/lib/camltc/tc -I /home/opam/.opam/4.14/lib/cpm -I /home/opam/.opam/4.14/lib/dokeysto -I /home/opam/.opam/4.14/lib/dokeysto_camltc -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/extunix -I /home/opam/.opam/4.14/lib/logs -I /home/opam/.opam/4.14/lib/logs/lwt -I /home/opam/.opam/4.14/lib/lwt -I /home/opam/.opam/4.14/lib/lwt/unix -I /home/opam/.opam/4.14/lib/minicli -I /home/opam/.opam/4.14/lib/minivpt -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -I /home/opam/.opam/4.14/lib/ocplib-endian -I /home/opam/.opam/4.14/lib/ocplib-endian/bigstring -I /home/opam/.opam/4.14/lib/parmap -I /home/opam/.opam/4.14/lib/zip -I src/.lbvs_consent.objs/byte -I src/.lbvs_consent.objs/native -intf-suffix .ml -no-alias-deps -o src/.mol_get.eobjs/native/mol_get.cmx -c -impl src/mol_get.ml)
- File "src/mol_get.ml", line 77, characters 22-38:
- 77 | | On_cli names -> BatString.nsplit names ~by:","
- ^^^^^^^^^^^^^^^^
- Alert deprecated: BatString.nsplit
- Use split_on_string instead.
-> compiled lbvs_consent.2.1.1
-> removed lbvs_consent.2.1.1
Processing 4/4: [lbvs_consent: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/lbvs_consent_ecfp4.py" "/home/opam/.opam/4.14/bin/lbvs_consent_ecfp4.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.1)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "src/lbvs_consent_ob_maccs" "/home/opam/.opam/4.14/bin/lbvs_consent_ob_maccs" (CWD=/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.1)
-> installed lbvs_consent.2.1.1
Done.
# To update the current shell environment, run: eval $(opam env)
2025-07-08 20:30.29 ---> saved as "6d96b10dd740720c3294daa188561f249943b12d332ccd89d3562fca13bc8dff"
Job succeeded
2025-07-08 20:30.39: Job succeeded