- github
- ocaml
- opam-repository
- db50ce
- compilers,4.14,lwt.6.0.0~beta00,revdeps,lbvs_consent.2.1.2
(not at the head of any monitored branch or PR)
2025-11-10 14:56.15: New job: test lbvs_consent.2.1.2 with lwt.6.0.0~beta00, using opam dev
from https://github.com/ocaml/opam-repository.git#refs/pull/28558/head (db50ce02bd0238ef1431a20de40a98e9f360a8c0)
on debian-13-ocaml-4.14/amd64
To reproduce locally:
cd $(mktemp -d)
git clone --recursive "https://github.com/ocaml/opam-repository.git" && cd "opam-repository" && git fetch origin "refs/pull/28558/head" && git reset --hard db50ce02
git fetch origin master
git merge --no-edit 21f97b2e6d7c617fc0a79cc8e59b2e10690960e1
cat > ../Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:debian-13-ocaml-4.14@sha256:00ac8d2b32d98ee2c476e540a2ee462e24f50f003f31c05c8e412147e16c039e
USER 1000:1000
WORKDIR /home/opam
RUN sudo ln -f /usr/bin/opam-dev /usr/bin/opam
RUN opam init --reinit -ni
RUN opam option solver=builtin-0install && opam config report
ENV OPAMDOWNLOADJOBS="1"
ENV OPAMERRLOGLEN="0"
ENV OPAMPRECISETRACKING="1"
ENV CI="true"
ENV OPAM_REPO_CI="true"
RUN rm -rf opam-repository/
COPY --chown=1000:1000 . opam-repository/
RUN opam repository set-url --strict default opam-repository/
RUN opam update --depexts || true
RUN opam pin add -k version -yn lwt.6.0.0~beta00 6.0.0~beta00
RUN opam reinstall lwt.6.0.0~beta00; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'lwt.6.0.0~beta00' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN opam reinstall lbvs_consent.2.1.2; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'lbvs_consent.2.1.2' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
RUN (opam reinstall --with-test lbvs_consent.2.1.2) || true
RUN opam reinstall --with-test --verbose lbvs_consent.2.1.2; \
res=$?; \
test "$res" != 31 && exit "$res"; \
export OPAMCLI=2.0; \
build_dir=$(opam var prefix)/.opam-switch/build; \
failed=$(ls "$build_dir"); \
partial_fails=""; \
for pkg in $failed; do \
if opam show -f x-ci-accept-failures: "$pkg" | grep -qF "\"debian-13\""; then \
echo "A package failed and has been disabled for CI using the 'x-ci-accept-failures' field."; \
fi; \
test "$pkg" != 'lbvs_consent.2.1.2' && partial_fails="$partial_fails $pkg"; \
done; \
test "${partial_fails}" != "" && echo "opam-repo-ci detected dependencies failing: ${partial_fails}"; \
exit 1
END-OF-DOCKERFILE
docker build -f ../Dockerfile .
2025-11-10 14:56.15: Using cache hint "ocaml/opam:debian-13-ocaml-4.14@sha256:00ac8d2b32d98ee2c476e540a2ee462e24f50f003f31c05c8e412147e16c039e-lwt.6.0.0~beta00-lbvs_consent.2.1.2-db50ce02bd0238ef1431a20de40a98e9f360a8c0"
2025-11-10 14:56.15: Using OBuilder spec:
((from ocaml/opam:debian-13-ocaml-4.14@sha256:00ac8d2b32d98ee2c476e540a2ee462e24f50f003f31c05c8e412147e16c039e)
(user (uid 1000) (gid 1000))
(workdir /home/opam)
(run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
(run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
(run (shell "opam option solver=builtin-0install && opam config report"))
(env OPAMDOWNLOADJOBS 1)
(env OPAMERRLOGLEN 0)
(env OPAMPRECISETRACKING 1)
(env CI true)
(env OPAM_REPO_CI true)
(run (shell "rm -rf opam-repository/"))
(copy (src .) (dst opam-repository/))
(run (shell "opam repository set-url --strict default opam-repository/"))
(run (network host)
(shell "opam update --depexts || true"))
(run (shell "opam pin add -k version -yn lwt.6.0.0~beta00 6.0.0~beta00"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall lwt.6.0.0~beta00;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lwt.6.0.0~beta00' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall lbvs_consent.2.1.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lbvs_consent.2.1.2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
(run (network host)
(shell "(opam reinstall --with-test lbvs_consent.2.1.2) || true"))
(run (shell "opam reinstall --with-test --verbose lbvs_consent.2.1.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lbvs_consent.2.1.2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
)
2025-11-10 14:56.15: Waiting for resource in pool OCluster
2025-11-10 19:55.14: Waiting for worker…
2025-11-10 19:57.09: Got resource from pool OCluster
Building on laodoke.caelum.ci.dev
All commits already cached
HEAD is now at 21f97b2e6d Merge pull request #28836 from dbuenzli/b0-publish-bytesrw.0.3.0
Merge made by the 'ort' strategy.
packages/lwt/lwt.6.0.0~beta00/opam | 67 ++++++++++++++++++++++++
packages/lwt_direct/lwt_direct.6.0.0~beta00/opam | 42 +++++++++++++++
2 files changed, 109 insertions(+)
create mode 100644 packages/lwt/lwt.6.0.0~beta00/opam
create mode 100644 packages/lwt_direct/lwt_direct.6.0.0~beta00/opam
(from ocaml/opam:debian-13-ocaml-4.14@sha256:00ac8d2b32d98ee2c476e540a2ee462e24f50f003f31c05c8e412147e16c039e)
Unable to find image 'ocaml/opam:debian-13-ocaml-4.14@sha256:00ac8d2b32d98ee2c476e540a2ee462e24f50f003f31c05c8e412147e16c039e' locally
docker.io/ocaml/opam@sha256:00ac8d2b32d98ee2c476e540a2ee462e24f50f003f31c05c8e412147e16c039e: Pulling from ocaml/opam
13cc39f8244a: Already exists
b27d53669817: Already exists
062c909e206e: Already exists
265baae72087: Already exists
b6b7b385247c: Already exists
bfb7bf5b7c6d: Already exists
b18c76fc18f2: Already exists
6bdbb37ee35f: Already exists
84035aa4da2d: Already exists
0c3307e14207: Already exists
30b92d637d72: Already exists
991b07583706: Already exists
e1d7a79a1495: Already exists
6b08d63c6214: Already exists
4c7236344711: Already exists
12506f41e8b0: Already exists
12506f41e8b0: Already exists
2330d596aec1: Already exists
a48299f5ec62: Already exists
04618a577568: Already exists
8c4b002d072b: Already exists
4f4fb700ef54: Already exists
ff68f05e2976: Already exists
d5543b560a3e: Already exists
4a9030bbb1ef: Already exists
c59b3bec3411: Already exists
85a7c9be9495: Already exists
dbc6bd8f2e44: Already exists
6680a5133ca2: Already exists
470c0056084c: Already exists
6b9af56b67cf: Already exists
c572cde25fb3: Already exists
033b2d405acf: Already exists
663cc5b3d424: Already exists
840bbd47fded: Already exists
fb8f644ba010: Already exists
66735543f230: Already exists
7896354b8c11: Already exists
a0063722d8c2: Already exists
7018e4a5881b: Already exists
68cdbf191334: Pulling fs layer
32f4eb11e5dc: Pulling fs layer
eeb0425dd47f: Pulling fs layer
12428cddc61a: Pulling fs layer
12428cddc61a: Waiting
32f4eb11e5dc: Verifying Checksum
32f4eb11e5dc: Download complete
eeb0425dd47f: Verifying Checksum
eeb0425dd47f: Download complete
12428cddc61a: Download complete
68cdbf191334: Verifying Checksum
68cdbf191334: Download complete
68cdbf191334: Pull complete
32f4eb11e5dc: Pull complete
eeb0425dd47f: Pull complete
12428cddc61a: Pull complete
Digest: sha256:00ac8d2b32d98ee2c476e540a2ee462e24f50f003f31c05c8e412147e16c039e
Status: Downloaded newer image for ocaml/opam@sha256:00ac8d2b32d98ee2c476e540a2ee462e24f50f003f31c05c8e412147e16c039e
2025-11-10 19:57.55 ---> using "0a7782df646ba17c4c91deb7545267f63c19555df9b225a0640862ce540c1383" from cache
/: (user (uid 1000) (gid 1000))
/: (workdir /home/opam)
/home/opam: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2025-11-10 19:57.55 ---> using "e3cc97f3c946abac4036e9918a15af8cd2359775cb282137405852a83e5e4ac5" from cache
/home/opam: (run (network host)
(shell "opam init --reinit --config .opamrc-sandbox -ni"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.
Continue? [Y/n] y
Format upgrade done.
<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2025-11-10 19:57.55 ---> using "b3771c9b2a97061bcd39a540eb46c8c9391a701a6a2417777709d0e8bcafecec" from cache
/home/opam: (run (shell "opam option solver=builtin-0install && opam config report"))
Set to 'builtin-0install' the field solver in global configuration
# opam config report
# opam-version 2.5.0~alpha1
# self-upgrade no
# system arch=x86_64 os=linux os-distribution=debian os-version=13
# solver builtin-0install
# install-criteria -changed,-count[avoid-version,solution]
# upgrade-criteria -count[avoid-version,solution]
# jobs 71
# repositories 1 (version-controlled)
# pinned 1 (version)
# current-switch 4.14
# invariant ["ocaml-base-compiler" {= "4.14.2"}]
# compiler-packages ocaml-base-compiler.4.14.2, ocaml-options-vanilla.1
# ocaml:native true
# ocaml:native-tools true
# ocaml:native-dynlink true
# ocaml:stubsdir /home/opam/.opam/4.14/lib/ocaml/stublibs:/home/opam/.opam/4.14/lib/ocaml
# ocaml:preinstalled false
# ocaml:compiler 4.14.2
2025-11-10 19:57.55 ---> using "8b9250364ffb330fc85473d01676fcba0e45f4a15f62098ec06ae23bfca0fd04" from cache
/home/opam: (env OPAMDOWNLOADJOBS 1)
/home/opam: (env OPAMERRLOGLEN 0)
/home/opam: (env OPAMPRECISETRACKING 1)
/home/opam: (env CI true)
/home/opam: (env OPAM_REPO_CI true)
/home/opam: (run (shell "rm -rf opam-repository/"))
2025-11-10 19:57.55 ---> using "324936077a47671067794cc83def947ee8a01c92aab91da2d8bb3576676449b4" from cache
/home/opam: (copy (src .) (dst opam-repository/))
2025-11-10 19:57.57 ---> using "bcf068effe295b4e2ae5412d97f5268f38e57b3249714878d2948254ecb5f2c7" from cache
/home/opam: (run (shell "opam repository set-url --strict default opam-repository/"))
[default] Initialised
2025-11-10 19:57.57 ---> using "813792ae16d609ebed0f1530d892d292b58cbab36cb2032af0e286b7a39a5972" from cache
/home/opam: (run (network host)
(shell "opam update --depexts || true"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian trixie InRelease
- Get:2 http://deb.debian.org/debian trixie-updates InRelease [47.3 kB]
- Get:3 http://deb.debian.org/debian-security trixie-security InRelease [43.4 kB]
- Fetched 90.7 kB in 0s (944 kB/s)
- Reading package lists...
2025-11-10 19:57.57 ---> using "213a9304ddfdbe005d8eeb63b04bbfeb84eb275e3032a7ea485ba9ea7eef3763" from cache
/home/opam: (run (shell "opam pin add -k version -yn lwt.6.0.0~beta00 6.0.0~beta00"))
lwt is now pinned to version 6.0.0~beta00
2025-11-10 19:57.57 ---> using "d06a4202083f837dc1b56ee2da6303314c1e4c290f5ae07ef997ea318da4701f" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall lwt.6.0.0~beta00;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lwt.6.0.0~beta00' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
lwt.6.0.0~beta00 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 9 packages
- install base-bytes base [required by ocplib-endian]
- install cppo 1.8.0 [required by lwt]
- install csexp 1.5.2 [required by dune-configurator]
- install domain_shims 0.1.0 [required by lwt]
- install dune 3.20.2 [required by lwt]
- install dune-configurator 3.20.2 [required by lwt]
- install lwt 6.0.0~beta00 (pinned)
- install ocamlfind 1.9.8 [required by base-bytes]
- install ocplib-endian 1.2 [required by lwt]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved cppo.1.8.0 (cached)
-> retrieved csexp.1.5.2 (cached)
-> retrieved domain_shims.0.1.0 (cached)
-> retrieved dune.3.20.2, dune-configurator.3.20.2 (cached)
-> retrieved lwt.6.0.0~beta00 (cached)
-> retrieved ocamlfind.1.9.8 (cached)
-> retrieved ocplib-endian.1.2 (cached)
-> installed ocamlfind.1.9.8
-> installed base-bytes.base
-> installed dune.3.20.2
-> installed domain_shims.0.1.0
-> installed csexp.1.5.2
-> installed cppo.1.8.0
-> installed ocplib-endian.1.2
-> installed dune-configurator.3.20.2
-> installed lwt.6.0.0~beta00
Done.
# To update the current shell environment, run: eval $(opam env)
2025-11-10 19:57.57 ---> using "ed448efba804a737f6147e5850a455384ec4f932daa531d6f7c6cb77598f4fd4" from cache
/home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam reinstall lbvs_consent.2.1.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lbvs_consent.2.1.2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
lbvs_consent.2.1.2 is not installed. Install it? [Y/n] y
The following actions will be performed:
=== install 36 packages
- install batteries 3.10.0 [required by lbvs_consent]
- install bitv 2.1 [required by lbvs_consent]
- install camlp-streams 5.0.1 [required by batteries]
- install camltc 0.9.8 [required by dokeysto_camltc]
- install camlzip 1.13 [required by lbvs_consent]
- install conf-bash 1 [required by camltc]
- install conf-boost 1 [required by lbvs_consent]
- install conf-openbabel 0.1 [required by lbvs_consent]
- install conf-pkg-config 4 [required by lbvs_consent]
- install conf-python-3 9.0.0 [required by lbvs_consent]
- install conf-rdkit 1 [required by lbvs_consent]
- install conf-zlib 1 [required by camlzip]
- install cpm 12.2.0 [required by lbvs_consent]
- install dokeysto 4.0.2 [required by dokeysto_camltc]
- install dokeysto_camltc 4.0.2 [required by lbvs_consent]
- install dolog 6.0.0 [required by lbvs_consent]
- install extunix 0.4.4 [required by dokeysto]
- install lbvs_consent 2.1.2
- install logs 0.10.0 [required by camltc]
- install minicli 5.0.2 [required by lbvs_consent]
- install minivpt 2.0.0 [required by lbvs_consent]
- install num 1.6 [required by batteries]
- install obuild 0.1.11 [required by minivpt]
- install ocaml-compiler-libs v0.12.4 [required by ppxlib]
- install ocamlbuild 0.16.1 [required by logs]
- install ounit2 2.2.7 [required by qcheck-ounit]
- install parmap 1.2.5 [required by lbvs_consent]
- install ppx_derivers 1.2.1 [required by ppxlib]
- install ppxlib 0.37.0 [required by extunix]
- install qcheck 0.27 [required by lbvs_consent]
- install qcheck-core 0.27 [required by qcheck]
- install qcheck-ounit 0.27 [required by qcheck]
- install seq base [required by ounit2]
- install sexplib0 v0.17.0 [required by ppxlib]
- install stdlib-shims 0.3.0 [required by ounit2]
- install topkg 1.1.1 [required by logs]
The following system packages will first need to be installed:
libboost-dev libopenbabel-dev librdkit-dev pkg-config python3 python3-rdkit zlib1g-dev
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "libboost-dev" "libopenbabel-dev" "librdkit-dev" "pkg-config" "python3" "python3-rdkit" "zlib1g-dev"
- Preconfiguring packages ...
- Selecting previously unselected package libpython3.13-minimal:amd64.
- (Reading database ...
(Reading database ... 5%
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(Reading database ... 20622 files and directories currently installed.)
- Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ...
- Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ...
- Selecting previously unselected package python3.13-minimal.
- Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ...
- Unpacking python3.13-minimal (3.13.5-2) ...
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- Setting up media-types (13.0.0) ...
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- Setting up fontconfig-config (2.15.0-2.3) ...
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- Setting up libpython3-stdlib:amd64 (3.13.5-1) ...
- Setting up python3.13 (3.13.5-2) ...
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- running python rtupdate hooks for python3.13...
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- Setting up libcairo2:amd64 (1.18.4-1+b1) ...
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- Processing triggers for libc-bin (2.41-12) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved batteries.3.10.0 (cached)
-> retrieved bitv.2.1 (cached)
-> retrieved camlp-streams.5.0.1 (cached)
-> retrieved camltc.0.9.8 (cached)
-> retrieved camlzip.1.13 (cached)
-> retrieved conf-python-3.9.0.0 (cached)
-> retrieved conf-rdkit.1 (cached)
-> installed conf-boost.1
-> retrieved cpm.12.2.0 (cached)
-> retrieved dokeysto.4.0.2, dokeysto_camltc.4.0.2 (cached)
-> retrieved dolog.6.0.0 (cached)
-> installed conf-bash.1
-> installed conf-pkg-config.4
-> retrieved extunix.0.4.4 (cached)
-> installed conf-python-3.9.0.0
-> installed conf-openbabel.0.1
-> installed conf-zlib.1
-> retrieved lbvs_consent.2.1.2 (cached)
-> retrieved logs.0.10.0 (cached)
-> retrieved minicli.5.0.2 (cached)
-> retrieved minivpt.2.0.0 (cached)
-> retrieved num.1.6 (cached)
-> installed camlp-streams.5.0.1
-> installed conf-rdkit.1
-> retrieved obuild.0.1.11 (cached)
-> installed bitv.2.1
-> retrieved ocaml-compiler-libs.v0.12.4 (cached)
-> installed dolog.6.0.0
-> retrieved ocamlbuild.0.16.1 (cached)
-> retrieved ounit2.2.2.7 (cached)
-> retrieved parmap.1.2.5 (cached)
-> retrieved ppx_derivers.1.2.1 (cached)
-> installed minicli.5.0.2
-> installed ppx_derivers.1.2.1
-> retrieved ppxlib.0.37.0 (cached)
-> retrieved qcheck.0.27, qcheck-core.0.27, qcheck-ounit.0.27 (cached)
-> retrieved seq.base (cached)
-> installed seq.base
-> retrieved sexplib0.v0.17.0 (cached)
-> installed camlzip.1.13
-> installed num.1.6
-> installed ocaml-compiler-libs.v0.12.4
-> installed parmap.1.2.5
-> retrieved stdlib-shims.0.3.0 (cached)
-> retrieved topkg.1.1.1 (cached)
-> installed stdlib-shims.0.3.0
-> installed qcheck-core.0.27
-> installed sexplib0.v0.17.0
-> installed ounit2.2.2.7
-> installed qcheck-ounit.0.27
-> installed qcheck.0.27
-> installed obuild.0.1.11
-> installed minivpt.2.0.0
-> installed ocamlbuild.0.16.1
-> installed batteries.3.10.0
-> installed cpm.12.2.0
-> installed topkg.1.1.1
-> installed logs.0.10.0
-> installed camltc.0.9.8
-> installed ppxlib.0.37.0
-> installed extunix.0.4.4
-> installed dokeysto.4.0.2
-> installed dokeysto_camltc.4.0.2
-> installed lbvs_consent.2.1.2
Done.
# To update the current shell environment, run: eval $(opam env)
2025-11-10 19:59.15 ---> saved as "c5ccc983bc29f536604052d3e7dd5819a4bd891d334c54bc75c8ddc99f9a5e28"
/home/opam: (run (network host)
(shell "(opam reinstall --with-test lbvs_consent.2.1.2) || true"))
The following actions will be performed:
=== recompile 1 package
- recompile lbvs_consent 2.1.2
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved lbvs_consent.2.1.2 (https://opam.ocaml.org/cache)
-> removed lbvs_consent.2.1.2
-> installed lbvs_consent.2.1.2
Done.
# To update the current shell environment, run: eval $(opam env)
2025-11-10 19:59.32 ---> saved as "2823687b8776055c4e5ca93ef1007ba899f7591813296a0556957057b3820f6e"
/home/opam: (run (shell "opam reinstall --with-test --verbose lbvs_consent.2.1.2;\
\n res=$?;\
\n test \"$res\" != 31 && exit \"$res\";\
\n export OPAMCLI=2.0;\
\n build_dir=$(opam var prefix)/.opam-switch/build;\
\n failed=$(ls \"$build_dir\");\
\n partial_fails=\"\";\
\n for pkg in $failed; do\
\n if opam show -f x-ci-accept-failures: \"$pkg\" | grep -qF \"\\\"debian-13\\\"\"; then\
\n echo \"A package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\";\
\n fi;\
\n test \"$pkg\" != 'lbvs_consent.2.1.2' && partial_fails=\"$partial_fails $pkg\";\
\n done;\
\n test \"${partial_fails}\" != \"\" && echo \"opam-repo-ci detected dependencies failing: ${partial_fails}\";\
\n exit 1"))
The following actions will be performed:
=== recompile 1 package
- recompile lbvs_consent 2.1.2
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
Processing 1/4: [lbvs_consent.2.1.2: extract]
-> retrieved lbvs_consent.2.1.2 (cached)
[lbvs_consent: patch] applying makefile.patch
Processing 2/4: [lbvs_consent: make obmaccs]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "make" "obmaccs" (CWD=/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.2)
- cd src; make
- make[1]: Entering directory '/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.2/src'
- c++ -W -Wall `pkg-config --silence-errors --cflags openbabel-2.0 || pkg-config --cflags openbabel-3` ob_maccs.cpp \
- -o lbvs_consent_ob_maccs `pkg-config --silence-errors --libs openbabel-2.0 || pkg-config --libs openbabel-3` -Wl,-R/usr/lib
- In file included from /usr/include/openbabel3/openbabel/fingerprint.h:28,
- from ob_maccs.cpp:1:
- /usr/include/openbabel3/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
- 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool>
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/c++/14/bits/stl_tree.h:65,
- from /usr/include/c++/14/map:62,
- from /usr/include/openbabel3/openbabel/fingerprint.h:23:
- /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
- 131 | struct binary_function
- | ^~~~~~~~~~~~~~~
- In file included from /usr/include/openbabel3/openbabel/mol.h:48,
- from ob_maccs.cpp:2:
- /usr/include/openbabel3/openbabel/base.h: In member function 'virtual const char* OpenBabel::OBBase::GetTitle(bool) const':
- /usr/include/openbabel3/openbabel/base.h:286:49: warning: unused parameter 'replaceNewlines' [-Wunused-parameter]
- 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";}
- | ^
- /usr/include/openbabel3/openbabel/base.h:37:20: note: in definition of macro 'UNUSED'
- 37 | # define UNUSED(x) x
- | ^
- make[1]: Leaving directory '/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.2/src'
Processing 2/4: [lbvs_consent: dune build]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "dune" "build" "-p" "lbvs_consent" "-j" "71" (CWD=/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.2)
-> compiled lbvs_consent.2.1.2
-> removed lbvs_consent.2.1.2
Processing 4/4: [lbvs_consent: cp]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "bin/lbvs_consent_ecfp4.py" "/home/opam/.opam/4.14/bin/lbvs_consent_ecfp4.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.2)
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "install" "cp" "src/lbvs_consent_ob_maccs" "/home/opam/.opam/4.14/bin/lbvs_consent_ob_maccs" (CWD=/home/opam/.opam/4.14/.opam-switch/build/lbvs_consent.2.1.2)
-> installed lbvs_consent.2.1.2
Done.
# To update the current shell environment, run: eval $(opam env)
2025-11-10 19:59.49 ---> saved as "d3336bd884dfdb7aa3f94c0ca57d5910a5c6f249920fb2bfa1dada93679a3599"
Job succeeded
2025-11-10 20:00.07: Job succeeded